Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399326.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2593.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 756

Length: 1260
ACGTcount: A:0.33, C:0.13, G:0.11, T:0.35

Warning! 92 characters in sequence are not A, C, G, or T


Found at i:923 original size:171 final size:167

Alignment explanation


    Indices: 520--1256  Score: 574
    Period size: 171  Copynumber: 4.3  Consensus size: 167

        510 NNNNNNNNNN

                                 *       *                                   
        520 GCCTTATTACTCACTTTAAATGGTTTTATTATGC-CAAAATTGATTTTAAGTTTAGTTTTTTT-C
          1 GCCTTATTACTCACTTTAAATAGTTTTATAAT-CTCAAAATTGATTTTAAG-TTAGTTTTTTTAC

                   *                              **   *       **            
        583 TATTTTTAG-TTAAAACAGATTATAATTGAA-CATCTGTGTTGGGAAACGTGCAGAAAAAGCCAT
         64 T-TTTTTTGTTTAAAA-AGATTATAATTGAATC-TCTGACTTGAGAAAC-TATAG-AAAAGCCAT

             *                         *                 
        646 TAATTAGGAAGAAAAGTCCATTTATAGTCTCTCATTCCTTCAAAA
        124 TCATT-GGAAGAAAAGTCCATTTATAGCCTCTCATTCCTTCAAAA

                           * *                 * *                 *         
        691 GCCTTATTACTCACTATGAAT-GCTTTTATAATCTTATAATTGATTTTAAGTTGAATTTTTTTAC
          1 GCCTTATTACTCACTTTAAATAG-TTTTATAATCTCAAAATTGATTTTAAGTT-AGTTTTTTTAC

                              *                    *                         
        755 TTTTTTTGTTTAAAAAGACTATAATTGAATGCT-TGACTCGAGAAACTTATAGAAAATGCCATTC
         64 TTTTTTTGTTTAAAAAGATTATAATTGAAT-CTCTGACTTGAGAAAC-TATAGAAAA-GCCATTC

                            *                          
        819 AGTTGGAAGAAAAGTCTATTTATAGCCTCTCATTCCTTCAAAA
        126 A-TTGGAAGAAAAGTCCATTTATAGCCTCTCATTCCTTCAAAA

            *           *                                    *              *
        862 ACCTTATTACTCGCTTTAAATAGTTTTATAATCTCAAAATTGATTTTAAATATAGTTTTTTTAAA
          1 GCCTTATTACTCACTTTAAATAGTTTTATAATCTCAAAATTGATTTTAAGT-TAGTTTTTTT-AC

            **     *  *                   *                             *    
        927 ACTTTTTATTAAAAAAGATTATAATTGAATATCT-ACCTTGAGAAA-TATGAAGAAGAAGGCATT
         64 TTTTTTTGTTTAAAAAGATTATAATTGAATCTCTGA-CTTGAGAAACTAT--AGAA-AAGCCATT

                     *    *          *   *          **   
        990 CATT-GACAAAAAAATCCATTTATATCCAAC-CATTCCTTTTAAA
        125 CATTGGA-AGAAAAGTCCATTTATAGCC-TCTCATTCCTTCAAAA

                  *      *                                                   
       1033 GCCTTACTACTCAATTTAAATAGTTTTATAATCTCAAAATTGATTTTCAA-TT-GATTTTTTT--
          1 GCCTTATTACTCACTTTAAATAGTTTTATAATCTCAAAATTGATTTT-AAGTTAG-TTTTTTTAC

                      *        *   *         *                    *        * 
       1094 TTAATTTTTGGTTAAAACATATTGTAATTGAATATC-GACCTTGAGAAA-TAAGAAGAAAAAGGC
         64 TT--TTTTTGTTTAAAA-AGATTATAATTGAATCTCTGA-CTTGAGAAACT-A-TAG-AAAAGCC

               *     *   *     *      *           **         
       1157 ATTTATTGACAAGTAAAGTTCATTTACAGTCAC-CT-AAACCTTCAAAA
        122 ATTCATTG-GAAGAAAAGTCCATTTATAG-C-CTCTCATTCCTTCAAAA

             **                  *                               
       1204 GGATTATTACTCACTTTAAATGGTTTTATAATCTCAAAATTGATTTTAAGTTA
          1 GCCTTATTACTCACTTTAAATAGTTTTATAATCTCAAAATTGATTTTAAGTTA

       1257 AATT


Statistics
Matches: 460,  Mismatches: 71, Indels: 69
        0.77            0.12        0.12

Matches are distributed among these distances:
 169   11  0.02
 170   64  0.14
 171  317  0.69
 172   64  0.14
 173    4  0.01

ACGTcount: A:0.36, C:0.13, G:0.11, T:0.40


Consensus pattern (167 bp):   
GCCTTATTACTCACTTTAAATAGTTTTATAATCTCAAAATTGATTTTAAGTTAGTTTTTTTACTT
TTTTTGTTTAAAAAGATTATAATTGAATCTCTGACTTGAGAAACTATAGAAAAGCCATTCATTGG
AAGAAAAGTCCATTTATAGCCTCTCATTCCTTCAAAA
Done.