Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399328.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2597.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3498
ACGTcount: A:0.19, C:0.06, G:0.06, T:0.18

Warning! 1782 characters in sequence are not A, C, G, or T


Found at i:2003 original size:169 final size:168

Alignment explanation


    Indices: 1543--2063  Score: 526
    Period size: 169  Copynumber: 3.1  Consensus size: 168

       1533 NNNNNNNNNN

                           *          *                             *        
       1543 TTCGAAGGCATGAGTGACTATAAATGAACTTTTTTTACCAATGGATATCTTTTCTTTACGTTTCT
          1 TTCGAAGGCATGAGTTACTATAAATGGACTTTTTTTACCAATGGATAT-TTTTCTTCACGTTTCT

              *   *             *           *                     *          
       1608 CATGGTGGACATTCAATTATAATCCATTTTAACAAAAAATATAAAAAAATTCAAATTAAAATCAA
         65 CAAGGTAGACATTCAATTATTATCCATTTTAATAAAAAATAT-AAAAAATTCAACTTAAAATCAA

                 * *    **********  *               
       1673 TTATGGGGTTATNNNNNNNNNNAATGCGAGTAATAAGGCT
        129 TTATGAGATTATAAAAACACTTAAAGCGAGTAATAAGGCT

                  * *   *                       **                           
       1713 TTCGAAAGAATGTGTTACTATAAATGGACTTTTTTTGTCAATGGATATTTTTTTCTTCACGTTTC
          1 TTCGAAGGCATGAGTTACTATAAATGGACTTTTTTTACCAATGGATA--TTTTTCTTCACGTTTC

                                    *********                                
       1778 TCAAGGTAGACATTCAATTA-TANNNNNNNNNNATAAAAAATATAAGAAAATTCAACTTAAAATC
         64 TCAAGGTAGACATTCAATTATTA-TCCATTTTAATAAAAAATATAA-AAAATTCAACTTAAAATC

                                                      
       1842 AATTATGAGATTATAAAAACACTTAAAGCGAGTAATAAGGCT
        127 AATTATGAGATTATAAAAACACTTAAAGCGAGTAATAAGGCT

                        *                    *       *                       
       1884 TTC-AAGGCATGGGTTACTATAAATGGACTTTTCTTACCAACGGATACTTTTTCTTCACGTTTCT
          1 TTCGAAGGCATGAGTTACTATAAATGGACTTTTTTTACCAATGGATA-TTTTTCTTCACGTTTCT

                     *             ***                      *             *  
       1948 CAAGGTAGATATTCAATTATTATTTGTTTTAATAAAAAATATAAAAACGTTCAACTTAAAATTAA
         65 CAAGGTAGACATTCAATTATTATCCATTTTAATAAAAAATATAAAAA-ATTCAACTTAAAATCAA

                                *      *             
       2013 TTATGAGATTA-AAAAAGCATTTAAAGGGAGTAATAAGGCT
        129 TTATGAGATTATAAAAA-CACTTAAAGCGAGTAATAAGGCT

                       
       2053 TTCGAAGGCAT
          1 TTCGAAGGCAT

       2064 NNNNNNNNNN


Statistics
Matches: 286,  Mismatches: 57, Indels: 16
        0.80            0.16        0.04

Matches are distributed among these distances:
 168    8  0.03
 169   98  0.34
 170   88  0.31
 171   91  0.32
 172    1  0.00

ACGTcount: A:0.37, C:0.12, G:0.14, T:0.34


Consensus pattern (168 bp):   
TTCGAAGGCATGAGTTACTATAAATGGACTTTTTTTACCAATGGATATTTTTCTTCACGTTTCTC
AAGGTAGACATTCAATTATTATCCATTTTAATAAAAAATATAAAAAATTCAACTTAAAATCAATT
ATGAGATTATAAAAACACTTAAAGCGAGTAATAAGGCT
Done.