Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018397461.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_966.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 16465
ACGTcount: A:0.34, C:0.11, G:0.12, T:0.31
Warning! 2079 characters in sequence are not A, C, G, or T
Found at i:444 original size:171 final size:170
Alignment explanation
Indices: 139--604 Score: 526
Period size: 172 Copynumber: 2.7 Consensus size: 170
129 NNNNNNNNNN
** *
139 TTATGAAATTATAAAACTATTTAAAGCGAGTAATAAGGCTTTTTGAAGGTTTGAGTGACTACAAA
1 TTATGAAATTATAAAACTATTTAAAGCGAGTAATAAGGC-TTTTGAAGG-CAGAGTGACTATAAA
* * * * * * * * *
204 TGGACTTTTCATATCAATGG-ATGACTTTTGCTTCATGTTTCCCAAAGGATACATTCAATTTTAA
64 TGGACTTTTCTTGTCAA-GGAATGGCTTTTTCTTCATGTTTCCCAAAGCAGACAGTCAAATATAA
* * * *
268 TATGTTTTAATAAAAAA-AAGTAAAAAATTCAACTTAAAATTAA
128 TATGTTTTAACAAAAAATAA-AAAAAAATTCAACCTAAAATCAA
* * *
311 TTATGAGATTAAAAAACTATTTAAAGCGTGTAATAAGGCTTTTGAAGGCACGAGTGACTATAAAT
1 TTATGAAATTATAAAACTATTTAAAGCGAGTAATAAGGCTTTTGAAGGCA-GAGTGACTATAAAT
* **
376 AGACTTTTCTTGTCAAGGAATGGCTTTTTCTTCATGTTTCTTAAAGCAGACAGTCAAATATAATA
65 GGACTTTTCTTGTCAAGGAATGGCTTTTTCTTCATGTTTCCCAAAGCAGACAGTCAAATATAATA
441 TGTTTTAACAAAAAATCTAAAAAAAAATTCAACCTAAAATCAA
130 TGTTTTAACAAAAAA--TAAAAAAAAATTCAACCTAAAATCAA
* * * * *
484 TTATGAAATTATAAAA-TCATTTAAAACGCGTAATAAGAC-TTCGAAGGCATAGGTGACTATAAA
1 TTATGAAATTATAAAACT-ATTTAAAGCGAGTAATAAGGCTTTTGAAGGCAGA-GTGACTATAAA
* * * * * *
547 TGGACTTTTTTTGCCAATGAATGGCTTTTTCTTGATGTTTCCCAAGGCAGACATTCAA
64 TGGACTTTTCTTGTCAAGGAATGGCTTTTTCTTCATGTTTCCCAAAGCAGACAGTCAA
605 TTAGAATCTA
Statistics
Matches: 249, Mismatches: 38, Indels: 14
0.83 0.13 0.05
Matches are distributed among these distances:
170 2 0.01
171 87 0.35
172 106 0.43
173 52 0.21
174 2 0.01
ACGTcount: A:0.39, C:0.12, G:0.15, T:0.34
Consensus pattern (170 bp):
TTATGAAATTATAAAACTATTTAAAGCGAGTAATAAGGCTTTTGAAGGCAGAGTGACTATAAATG
GACTTTTCTTGTCAAGGAATGGCTTTTTCTTCATGTTTCCCAAAGCAGACAGTCAAATATAATAT
GTTTTAACAAAAAATAAAAAAAAATTCAACCTAAAATCAA
Found at i:1832 original size:171 final size:171
Alignment explanation
Indices: 1500--5296 Score: 1147
Period size: 171 Copynumber: 22.2 Consensus size: 171
1490 NNNNNNNTAA
* * ** * * ** * **
1500 CTTTTGCTTCACGTTTCCCAAATCAGACATTCAATTATAATACATTTTAATAAAAAAATAAAAAA
1 CTTTTTCTTCACGTTTCTCAAGGCAGACATTCAATTATAATCCGTTTTAA-CCAACAATGCAAAA
* * * * * ****
1565 AAATT-AACTTAATATCAATTATGAGATTATAAAACTAACTTAAAGCAAGTAATAAGGCTGGCAA
65 AAATTCAACCTAAAATCAATTATGAGATTATAAAAC-CATTTAAAGCGAGTAATAAGGCTTTTGA
1629 AAGCT-T-AGGTGACTATAAATGGACTTTTGTTGTTAATGAATAG
129 AAG-TATGA-GTGACTATAAATGGACTTTTGTTGTTAATGAATAG
* *
1672 CTTTTTCTTCATGTTTCTAAAGGCAGACATTCAATTATAATCCGTTTTAACCAACAATGCAAAAA
1 CTTTTTCTTCACGTTTCTCAAGGCAGACATTCAATTATAATCCGTTTTAACCAACAATGCAAAAA
* ********** * *
1737 AATTCAACCTAAAATCAATTATGAGTTTATANNNNNNNNNNAAGCGGGTAATAAGGCTTTTAAAA
66 AATTCAACCTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAA
* * * *
1802 GTATGAGTGACTGTAAATGGATTTTTGTTGTCAATGAATAA
131 GTATGAGTGACTATAAATGGACTTTTGTTGTTAATGAATAG
* * * * ** *
1843 CTTTTT-TCTCACGTATCTCAAGGCAAATATTTAATTATAAT--GTTTTAATTAACAAAAT-AAA
1 CTTTTTCT-TCACGTTTCTCAAGGCAGACATTCAATTATAATCCGTTTTAACCAAC--AATGCAA
* * *
1904 AAAAATT-AACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGAGAATAATAAGGCTTTTG
63 AAAAATTCAACCTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTG
* * * *
1968 AAGGTGTGGGTGACTATAAATAGACTTTTGTTGTTAATGAATAG
128 AAAGTATGAGTGACTATAAATGGACTTTTGTTGTTAATGAATAG
* * * * *
2012 TTTTTTCTTCACGTTTCTCAAGGTAGATATTCAATTATAATCTC-TTTTAAGCAACAATGTAAAA
1 CTTTTTCTTCACGTTTCTCAAGGCAGACATTCAATTATAATC-CGTTTTAACCAACAATGCAAAA
* * *
2076 AAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAACGCTTTTGAA
65 AAATTCAACCTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAA
* * *
2141 AGAAT-AGGTGACTATAAATGGACTTTTCTTGCTAATGAAT-G
130 AGTATGA-GTGACTATAAATGGACTTTTGTTGTTAATGAATAG
* ** ** * * *
2182 ACTTTTTCTTTATATTTCTTGAGGTAGACACTT-AATTATAA-CCTGTTTTATCCAAAAATGCAA
1 -CTTTTTCTTCACGTTTCTCAAGGCAGACA-TTCAATTATAATCC-GTTTTAACCAACAATGCAA
* * * * * ***
2245 GAACATGCAACCTAAAATCAATTATGAGTTTATAAAACTATTTAAA-CAGAGTAATAAGGCTNNN
63 AAAAATTCAACCTAAAATCAATTATGAGATTATAAAACCATTTAAAGC-GAGTAATAAGGCTTTT
******* * * ** * *
2309 NNNNNNNTGGGTGACTATAAATGGACTTTTGCTGCCAATAAATGG
127 GAAAGTATGAGTGACTATAAATGGACTTTTGTTGTTAATGAATAG
* * ** * * *
2354 CTTTTTCTTCATGTTT-TCAAAGGCAGACATTCAATTACAATCTATTTTAAGCAAAAATGTAAAA
1 CTTTTTCTTCACGTTTCTC-AAGGCAGACATTCAATTATAATCCGTTTTAACCAACAATGCAAAA
* * ********* * * * *
2418 ATATTCAACTTNNNNNNNNNNT-TGAGGTTATAAAATCATTTAAAGGGAGCAATAAGGCTTTTG-
65 AAATTCAACCT-AAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGA
* * * * * * ** *
2481 AAGACATGGGTAATTATAAATGAACTTTTCTTGCCAATGAATGG
129 AAG-TATGAGTGACTATAAATGGACTTTTGTTGTTAATGAATAG
* * * * * * *
2525 CTTTTTCATT-ACATTTC-CTAAGGTAGACATTCAATTATAATCTGTTTCAACTAAAAATGTAAA
1 CTTTTTC-TTCACGTTTCTC-AAGGCAGACATTCAATTATAATCCGTTTTAACCAACAATGCAAA
* * * * * * * *
2588 AAAATTTAACTTAAAATCAATTATCAGATAATAAAACTATTTAAGGCGAGTAATAAAGCTTTCGA
64 AAAATTCAACCTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGA
* * * ** *
2653 AGGCT-TGAGTGACAACAAATGGAC-TTT-TTGCACCAATGAATGG
129 AAG-TATGAGTGACTATAAATGGACTTTTGTTG--TTAATGAATAG
* * * * * ** * * *
2696 CTTTTGCTTTACGTTTCTCAAGGCAGAGATTCAATTATAAT--ATATTCAATAAAAAATGTAAGA
1 CTTTTTCTTCACGTTTCTCAAGGCAGACATTCAATTATAATCCGT-TTTAACCAACAATGCAAAA
* * * ********** *
2759 TAATTCAACTTAAAATTAATTATGAGATNNNNNNNNNNTTTAAAGCGAGTAATAAGGCTTTCGAA
65 AAATTCAACCTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAA
* * * * * **
2824 TGCT-TGGGTGATTATAAATGGGCTTTTCTTGCCAATGAATGAG
130 AG-TATGAGTGACTATAAATGGACTTTTGTTGTTAATGAAT-AG
* * * * * ** * * *
2867 -TTTTTTTTCACATTTCTCAAGGTAAACATTCAATTACAATTTGTTTTAACTAAAAATGTAAAAA
1 CTTTTTCTTCACGTTTCTCAAGGCAGACATTCAATTATAATCCGTTTTAACCAACAATG---CAA
* * * * *
2931 AAAAAATCAGCCTAAAATCAATTATGGGATTATAAAATCATTTAAAGCGAGGAATAAGGCTTTTG
63 AAAAATTCAACCTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTG
* * * * ** * *
2996 AAGGCAT-AGGTGACTATAAATAGACTTTTCTCATCAATGAATGG
128 AAAGTATGA-GTGACTATAAATGGACTTTTGTTGTTAATGAATAG
* * * * * * * * **
3040 CTTTTTCTTCACGTTTTTCAAGGAAGATAGTCAATTATAATCAGTTTGAACTAAAAATATAAAAA
1 CTTTTTCTTCACGTTTCTCAAGGCAGACATTCAATTATAATCCGTTTTAACCAACAATGCAAAAA
* * * ** *
3105 TATTCAACCTAAAATCAATTATGAGATTGTAAAATCATTTAAAGCGAGTAATAAAACCTTCT-AA
66 AATTCAACCTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAAT-AAGGCTTTTGAA
* * * * * ** * *
3169 GGCATGGGTTACTATAAATGGACTTTTCTCATCAATGAATGG
130 AGTATGAGTGACTATAAATGGACTTTTGTTGTTAATGAATAG
* * * * * * * * **
3211 CTTTTTCTTCACGTTTTTCAAGGAAAATAGTCAATTATAATCAGTTTGAACTAA-AACTATAAAA
1 CTTTTTCTTCACGTTTCTCAAGGCAGACATTCAATTATAATCCGTTTTAACCAACAA-TGCAAAA
* * ********** * * **
3275 ATATTCAACCTAAAATCAATTATGAGATTGTAANNNNNNNNNNAGCGAGTAATAAAGCCTTCCAA
65 AAATTCAACCTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAA
* * * * * * * *
3340 GGCATGGGTTACTATAAATAGACTTTTCTTCTCAATGAAT-G
130 AGTATGAGTGACTATAAATGGACTTTTGTTGTTAATGAATAG
* * * * *** ** **
3381 GTTTTGTCTTCATGTTTCCCATGGTCTTTTC-TT-AATTATAATATGTTTTAA-CAA-AATATAT
1 CTTTT-TCTTCACGTTTCTCAAGG-C-AGACATTCAATTATAATCCGTTTTAACCAACAATGCA-
* * * ***********
3442 AAAAGAATTCAACTTAAAATCAAATATGAGATTACAAAACTNNNNNNNNNNAGTAATAAGGCTTT
62 AAAA-AATTCAACCTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTT
* * * * * **
3507 T-AAGGGAATGGGTGACTATAAATAGACTTTTCTTGCCAATGAAT-G
126 TGAA-AGTATGAGTGACTATAAATGGACTTTTGTTGTTAATGAATAG
* * * * * ** * *****
3552 CCTATTTCTTCAAGTTTTTCAAGGTAGACTTTCAATTATAATTTGTTTTAACCAAAAATATNNNN
1 -CTTTTTCTTCACGTTTCTCAAGGCAGACATTCAATTATAATCCGTTTTAACCAACAAT-GCAAA
****** * * * * * *
3617 NNNNNNCAACTTAAAATCAATTATGAGATTATAAAACTATTTACAA-TGAGTAATTAGAC-TTGG
64 AAAATTCAACCTAAAATCAATTATGAGATTATAAAACCATTTA-AAGCGAGTAATAAGGCTTTTG
* *
3680 AAAGGCT-TGAGTGACTATAAGTGGACTTTT-TACTG-CAAT-AGAT-G
128 AAA-G-TATGAGTGACTATAAATGGACTTTTGT--TGTTAATGA-ATAG
* * ********** *** * * *
3724 ACTTTTGCTTCATGTTTC-CTAANNNNNNNNNNCAATTATAATATATTTTAATCAAAAATGTAAA
1 -CTTTTTCTTCACGTTTCTC-AAGGCAGACATTCAATTATAATCCGTTTTAACCAACAATG-CAA
** * * * ** *
3788 AAAAATTCAATTTAAAATCAATTATGAGATTTTAAAACTAATTTAAAGTGAGTAATAACACTTTC
63 AAAAATTCAACCTAAAATCAATTATGAGATTATAAAAC-CATTTAAAGCGAGTAATAAGGCTTTT
* * *
3853 G-AAGGATTAG-GTACTATAAATGGACTTTTCTTGTTAATGAATAG
127 GAAAGTATGAGTG-ACTATAAATGGACTTTTGTTGTTAATGAATAG
********** * * **
3897 CTTTTTCTTCACGNNNNNNNNNNCAGACATTCAATTATAATCTGTTTTAA-CAAAATATGTGAAA
1 CTTTTTCTTCACGTTTCTCAAGGCAGACATTCAATTATAATCCGTTTTAACCAACA-ATGCAAAA
* * * * * * *
3961 CAATTCACCCTAAAA-CTAATTATGATATTATAAAACTATTTAAAGCAAGTAATTAGGATTTTGA
65 AAATTCAACCTAAAATC-AATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGA
* * * * *
4025 AGGCT-TGGGTGACTATCAATGGACTTTTGTTGTCAATGAATGG
129 AAG-TATGAGTGACTATAAATGGACTTTTGTTGTTAATGAATAG
* * * * * * ** * *
4068 CTTTTTCTTAATGTTTCTC-TGATCAAACATTCAATGATAATCTATTTTAATCGACAATGCAAAA
1 CTTTTTCTTCACGTTTCTCAAG-GCAGACATTCAATTATAATCCGTTTTAACCAACAATGCAAAA
* ** * ***
4132 AAATTCTATTTAAAATTAATTATGAGATTATAAAACCATTTAAAAAAAGTAATAAGGCTTTTGAA
65 AAATTCAACCTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAA
* * * * * * ***
4197 GGAAT-AGGTAACTAT-GATAGACTTTTCTTACCAATGAAT-G
130 AGTATGA-GTGACTATAAATGGACTTTTGTTGTTAATGAATAG
* * * * * * *
4237 ACTTTTTTTTCATGTTTCTTAAGGTAGACACTT-AATTATAA-CCTGTTTTAACTAAAAATGTAA
1 -CTTTTTCTTCACGTTTCTCAAGGCAGACA-TTCAATTATAATCC-GTTTTAACCAACAATGCAA
* ********** *
4300 GAAAATTCAACCTAAAATCAATTNNNNNNNNNNAAAACCATTTAAAGCGAGTAATAAGGC-TTTC
63 AAAAATTCAACCTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTG
* * * * ** *
4364 AAAGGCAT-AGGTGAATATAAATGGACTTTTCTCGCCAATGAATGG
128 AAA-GTATGA-GTGACTATAAATGGACTTTTGTTGTTAATGAATAG
* ** * *** * *
4409 C-TTTTCTTTACGTTTCTCGAA-ATAAACATTCAATTATAATATATTTTAACTAAAAAT--ATAA
1 CTTTTTCTTCACGTTTCTC-AAGGCAGACATTCAATTATAATCCGTTTTAACCAACAATGCA-AA
* * * * * * **********
4470 AAAATTCAACTTAAAATCAATTACGAGTTTACAATACCATTTAAAGTGAGTANNNNNNNNNNTGA
64 AAAATTCAACCTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGA
** * * * * * *
4535 GGGAATGAGTGACTATAAATGGGCTTTTCTTGCT-ATTAATGG
129 AAGTATGAGTGACTATAAATGGACTTTTGTTGTTAATGAATAG
* * * * * * * * *** * * * * *
4577 CCTTTCCTTCATGTTTCTTAGGGCAAACATTGAATCATAATATATTTCAATCAAAAATGTAGAAA
1 CTTTTTCTTCACGTTTCTCAAGGCAGACATTCAATTATAATCCGTTTTAACCAACAATGCAAAAA
* ********** * *
4642 AATTCAACTTAAAATCAATTATGAGATTATAAANNNNNNNNNNGTGAGTAATAAGGCTTTTGAAG
66 AATTCAACCTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAA
* * * * *
4707 GCATGGGTGACTATAAATGGATTTTTCTTGTTAATGAATGG
131 GTATGAGTGACTATAAATGGACTTTTGTTGTTAATGAATAG
* * ** * ** * * * ** *
4748 CTTTTTCTTGATGTTTCTCAAGATAGACATACAATTATAATCTATTTTAGCTAAAAATATATAAA
1 CTTTTTCTTCACGTTTCTCAAGGCAGACATTCAATTATAATCCGTTTTAACCAACAATGCAAAAA
* * * * * ********** *
4813 CATTCGACTTAAAATCAATTATAAAATTATNNNNNNNNNNAAAGCAAGTAATAAGGCTTTTG-AA
66 AATTCAACCTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAA
* * * ** *
4877 GATTTGACTGACTATAAGTGGACTTTT-TATACTAATGGAT-G
131 G-TATGAGTGACTATAAATGGACTTTTGT-TGTTAATGAATAG
* * * * *** * * * *
4918 ACTTTTGCTTCATGTTTCTCAAGGCAAACATTCAATTGTAATATATTTTAATCAAAAAAGTAAAA
1 -CTTTTTCTTCACGTTTCTCAAGGCAGACATTCAATTATAATCCGTTTTAACCAACAATGCAAAA
* * * ******************
4983 ACATTCAGCTTAAAATCAATTATGAGATTATAAANNNNNNNNNNNNNNNNNNTAAGGCTTTTGAA
65 AAATTCAACCTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAA
* * * * * **
5048 GGAATAAGTGCCTATAAATGGACTTTTCTTGCCAATGAAT-G
130 AGTATGAGTGACTATAAATGGACTTTTGTTGTTAATGAATAG
* ** * * *
5089 ACTTTTTCTTCAAGTTTCTTGAGGCAGACACTT-AATTGTAAGT-TGTTTTAATCGAA-AAT--A
1 -CTTTTTCTTCACGTTTCTCAAGGCAGACA-TTCAATTATAA-TCCGTTTTAA-CCAACAATGCA
* * ** * *
5149 AAGAAAATT-AAGCCTAAAATCGATTATGAGTTTATAAAATTATTTAAAGTGAGTAATAAGACTT
62 AA-AAAATTCAA-CCTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTT
* * * * * *
5213 TTGAAGGGATTG-GTGGCTATAAATGAACTTTTGTTGTCAATAAATTA-
125 TTGAAAGTA-TGAGTGACTATAAATGGACTTTTGTTGTTAATGAA-TAG
* *
5260 CTTTTTCTTCATG-TTCTCAGAAGCAGACATTCAATTA
1 CTTTTTCTTCACGTTTCTCA-AGGCAGACATTCAATTA
5297 CAAACTGNNN
Statistics
Matches: 2731, Mismatches: 770, Indels: 250
0.73 0.21 0.07
Matches are distributed among these distances:
168 10 0.00
169 260 0.10
170 523 0.19
171 1480 0.54
172 303 0.11
173 27 0.01
174 128 0.05
ACGTcount: A:0.37, C:0.12, G:0.13, T:0.34
Consensus pattern (171 bp):
CTTTTTCTTCACGTTTCTCAAGGCAGACATTCAATTATAATCCGTTTTAACCAACAATGCAAAAA
AATTCAACCTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAA
GTATGAGTGACTATAAATGGACTTTTGTTGTTAATGAATAG
Found at i:4355 original size:170 final size:159
Alignment explanation
Indices: 4162--4492 Score: 310
Period size: 170 Copynumber: 2.0 Consensus size: 159
4152 TATGAGATTA
** *
4162 TAAAACCATTTAAAAAAAGTAATAAGGCTTTTGAAGGAATAGGT-AACTAT-GATAGACTTTTCT
1 TAAAACCATTTAAAAAAAGTAATAAGGCTTTCAAAGGAATAGGTGAA-TATAAATAGACTTTTCT
* * * * * * * *
4225 TACCAATGAATGACTTTTTTTTCATGTTTCT-TAAGGTAGACACTT-AATTATAACCTGTTTTAA
65 CACCAATGAATGACTTTTCTTT-ACGTTTCTCGAA-ATAAACA-TTCAATTATAACATATTTTAA
*
4288 CTAAAAATGTAAGAAAATTCAACCTAAAATCAAT
127 CTAAAAATATAA-AAAATTCAACCTAAAATCAAT
*** * *
4322 TNNNNNNNNNNAAAACCATTTAAAGCGAGTAATAAGGCTTTCAAAGGCATAGGTGAATATAAATG
1 T----------AAAACCATTTAAAAAAAGTAATAAGGCTTTCAAAGGAATAGGTGAATATAAATA
* * *
4387 GACTTTTCTCGCCAATGAATGGCTTTTCTTTACGTTTCTCGAAATAAACATTCAATTATAATATA
56 GACTTTTCTCACCAATGAATGACTTTTCTTTACGTTTCTCGAAATAAACATTCAATTATAACATA
*
4452 TTTTAACTAAAAATATAAAAAATTCAACTTAAAATCAAT
121 TTTTAACTAAAAATATAAAAAATTCAACCTAAAATCAAT
4491 TA
1 TA
4493 CGAGTTTACA
Statistics
Matches: 136, Mismatches: 21, Indels: 29
0.73 0.11 0.16
Matches are distributed among these distances:
159 1 0.01
160 1 0.01
169 23 0.17
170 78 0.57
171 33 0.24
ACGTcount: A:0.40, C:0.13, G:0.11, T:0.33
Consensus pattern (159 bp):
TAAAACCATTTAAAAAAAGTAATAAGGCTTTCAAAGGAATAGGTGAATATAAATAGACTTTTCTC
ACCAATGAATGACTTTTCTTTACGTTTCTCGAAATAAACATTCAATTATAACATATTTTAACTAA
AAATATAAAAAATTCAACCTAAAATCAAT
Found at i:6851 original size:171 final size:171
Alignment explanation
Indices: 6064--8295 Score: 1960
Period size: 171 Copynumber: 13.1 Consensus size: 171
6054 TGCTTAAACG
* * * ** * *
6064 AAAATGT-AACAAATTTAACCTAAAATCAATTATGAGATTGGAAAATCATTTAAAGTGAGTAATA
1 AAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATA
* * * * *
6128 AGGCTTTCGAAGGCA-TAAGTGACTATAAATGGACTTTTCTTGTCAATGAATGGCTTTGTCTTCA
66 AGGCTTTTGAAGG-ATTAGGTGACTATAAATGGACTTTTCTTGTCAATGAATAGCTTTTTCTTTA
* * *
6192 TGTTTCCCATGGTAGACATTCAATTATAATCTGTTTTAACCA
130 TGTTTTCCAAGGTAAACATTCAATTATAATCTGTTTTAACCA
* * * * *
6234 TAAATGTACAAGAATTCAACTTAAAATCAAATATGAGATTATAAAACCATTTAAAGTGAGTAATA
1 AAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATA
* *** *
6299 AGGCTTTTGAGGGAACGGGTGACTATAAATGGACTTTTCTTGCCAATGAATA-CTTTTT-TCTTA
66 AGGCTTTTGAAGGATTAGGTGACTATAAATGGACTTTTCTTGTCAATGAATAGCTTTTTCT-TTA
* * * * *
6362 TGTTTTCAAAGGCAAACATTCAAATATAATCCGTTTTAACTA
130 TGTTTTCCAAGGTAAACATTCAATTATAATCTGTTTTAACCA
* * * *
6404 AAAATTTTAAAAAATTCAACTTAAAATGAATTATGAGATTATAAAATCATTTAAAGCGAGTAATA
1 AAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATA
* * * * * * * * ** * * * * *
6469 AGACTTTCGAAAGCTT-GAGTAACTACAAGTAGACCTTTT-AGGTCAATCAGTAACTTTTGCTTC
66 AGGCTTTTGAAGGATTAG-GTGACTATAAATGGA-CTTTTCTTGTCAATGAATAGCTTTTTCTTT
* * *** *
6532 A-GTTTTCCAAGGCAAGCATTCAATTATAATAAATTTTAATCA
129 ATGTTTTCCAAGGTAAACATTCAATTATAATCTGTTTTAACCA
* * * * * *
6574 AATATTTTAAAAAAAATTCAACTTAAAATCAGTTATGAGATTATAAAGCCAATTTAAAACGAATA
1 AA-AATGT-AAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACC-ATTTAAAGCGAGTA
* * * * *
6639 ATAAGGCTTTTGAAGGCTTAGGTGAGTGTAAATGAACTTTTCTTGTCAATGAATAGCTTTGTCTT
63 ATAAGGCTTTTGAAGGATTAGGTGACTATAAATGGACTTTTCTTGTCAATGAATAGCTTTTTCTT
* * *
6704 TACGTTTTCCAAGGAAAACATTCAATTATAATCTATTTTAACCA
128 TATGTTTTCCAAGGTAAACATTCAATTATAATCTGTTTTAACCA
* *
6748 AAAATGTAAAAAAATTCAACTTAAAATTAATTATGAGATTATAAAACCATTTAAAACGAGTAATA
1 AAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATA
*
6813 AGACTTTTGAAGGATTAGGT-ACCTATAAATGGACTTTTCTTGTCAATGAAT-GACTTTTT-TTT
66 AGGCTTTTGAAGGATTAGGTGA-CTATAAATGGACTTTTCTTGTCAATGAATAG-CTTTTTCTTT
** * * * * *
6875 CATGTTTCTTGATGCT-AACACTAAATTATAACCTGTTTTAACCA
129 -ATGTTT-TCCAAGGTAAACATTCAATTATAATCTGTTTTAACCA
* * * ** * * ** *
6919 TAAATGCAAGAAAATTCAGTTTAAAATCAATTATGAGTTTATAAAATCATTTAAAATGAGTGATA
1 AAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATA
* * * * *
6984 AGGCTTTTAAAGGGA-T-GTGTGACTATAAATGGGCTTTTGTTGTCAATAAAT-GGTTTTTGCTT
66 AGGCTTTTGAA-GGATTAG-GTGACTATAAATGGACTTTTCTTGTCAATGAATAGCTTTTT-CTT
* * * *
7046 CATG-TTTCTCAAGGTAGACATTTAATTATAATCTTTTTTAACCA
128 TATGTTTTC-CAAGGTAAACATTCAATTATAATCTGTTTTAACCA
* * * *
7090 ACAATGTAAAAAAATTTAACTTAAAATCAATTATGAGGTTATAAAACCATTTAAAGAGAGTAATA
1 AAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATA
* * * * *
7155 AGGCTTTTGAAGGCTTAAGTGACTA-AAAGTGAAC-TTT-TTGTGCAAATCAATAGCTTTTGCTT
66 AGGCTTTTGAAGGATTAGGTGACTATAAA-TGGACTTTTCTTGT-C-AATGAATAGCTTTTTCTT
* * * * **
7217 TATGTTTTCCAAGGTAGAGATTCAATTATAATATATTTTAATTA
128 TATGTTTTCCAAGGTAAACATTCAATTATAATCTGTTTTAACCA
* * * *
7261 AAAATAT-AAAAAATTCAATTTAAAATCAATTATGAGATTATAAAACTAATTTAAAGTGAGTAAT
1 AAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAAC-CATTTAAAGCGAGTAAT
** * ** * * * * * *
7325 AAGGCTTTCAAAGGCTTAGGCAACTATAAATGGACTTTTCTTTTCTATCAATTGCTTTTTCATCA
65 AAGGCTTTTGAAGGATTAGGTGACTATAAATGGACTTTTCTTGTCAATGAATAGCTTTTTCTTTA
* * * **
7390 TGTTTTCCAAGGAAAACATTCAATAATAATATGTTTTAACTG
130 TGTTTTCCAAGGTAAACATTCAATTATAATCTGTTTTAACCA
* *
7432 AAAATGT-AAAAAATTCAACCTT-AAATCAATTATGAGATTGTAAAACCATTTAAAGCAAGTAAT
1 AAAATGTAAAAAAATTCAA-CTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAAT
* ** * * * * * *
7495 AACGCTTTTGACAACA-T-GGAGACTGTAAATGGACTTTTCTTGCCAATAAATAACTTTTTCTTC
65 AAGGCTTTTGA-AGGATTAGGTGACTATAAATGGACTTTTCTTGTCAATGAATAGCTTTTTCTTT
* * * * **
7558 ATGTTTT-CAGAAGCAAACATTCAATTACAATCTATTTTAAGTA
129 ATGTTTTCCA-AGGTAAACATTCAATTATAATCTGTTTTAACCA
* * * ** * *
7601 AAAATATAAAAAAAATT-AACTTAAAATCAATTTTGAGTTTATAAAATTATTTAAAGTGAGCAAT
1 AAAATGT-AAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAAT
* * * * * *
7665 AAGGTTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTT-ACAAATGAAAAGTTTTTTCTTT
65 AAGGCTTTTGAAGGATTAGGTGACTATAAATGGACTTTTCTTGTC-AATGAATAGCTTTTTCTTT
** * * *
7729 A-CATTTCTTAAGGTAAACATTCAATTATAATATGTTTTAACAA
129 ATGTTTTC-CAAGGTAAACATTCAATTATAATCTGTTTTAACCA
* * *
7772 AAAAAGTAAAAAAATTTAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAACGAGTAATA
1 AAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATA
* * * *
7837 AGGCTTTCGAAGGCTT-GAGTGACTATAAATGGACTTTT-TATGTCAATGGAT-GACTTTTACTT
66 AGGCTTTTGAAGGATTAG-GTGACTATAAATGGACTTTTCT-TGTCAATGAATAG-CTTTTTCTT
* * * * * * *
7899 TATGTTTCCCAAGGCAGACATTCAATTATATTATATTTTAAGCA
128 TATGTTTTCCAAGGTAAACATTCAATTATAATCTGTTTTAACCA
* *
7943 AAAATG-AAAACAAATTCAACTTAAAATCAATTAGGACATTAT-AAACCAATTTAAAGCGAGTAA
1 AAAATGTAAAA-AAATTCAACTTAAAATCAATTATGAGATTATAAAACC-ATTTAAAGCGAGTAA
** * * * * * * * * * *
8006 TAAGGCTGCTAAAGGCTTAGGCGACTATAAATAGACTTTTCTTATTAGTGAATGGCTTTTTCATC
64 TAAGGCTTTTGAAGGATTAGGTGACTATAAATGGACTTTTCTTGTCAATGAATAGCTTTTTCTTT
* *
8071 ACG-TTTCCAAAGGTAAACATTCAATTATAATCTGTTTTAGCCA
129 ATGTTTTCC-AAGGTAAACATTCAATTATAATCTGTTTTAACCA
* * * ** * * * *
8114 AAAATGTAATAAGATTGAACAAAAAATCAATTATGAGATTATAAAACAACTTACAGCGAGTAAGA
1 AAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATA
* * * *
8179 AAGCTTTTGAAAGGATGA-GTGACTATAAATGGACTTTTATTGCCAATGAAT-GACTTTTTCTTT
66 AGGCTTTTG-AAGGATTAGGTGACTATAAATGGACTTTTCTTGTCAATGAATAG-CTTTTTCTTT
* ** * **
8242 ACGTTTTTTAAGGTGAACATTCAATTATAATCTGTTTTAATTA
129 ATGTTTTCCAAGGTAAACATTCAATTATAATCTGTTTTAACCA
*
8285 ACAATGTAAAA
1 AAAATGTAAAA
8296 CACCATTTAA
Statistics
Matches: 1655, Mismatches: 344, Indels: 125
0.78 0.16 0.06
Matches are distributed among these distances:
168 2 0.00
169 86 0.05
170 326 0.20
171 1012 0.61
172 131 0.08
173 59 0.04
174 39 0.02
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.35
Consensus pattern (171 bp):
AAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATA
AGGCTTTTGAAGGATTAGGTGACTATAAATGGACTTTTCTTGTCAATGAATAGCTTTTTCTTTAT
GTTTTCCAAGGTAAACATTCAATTATAATCTGTTTTAACCA
Found at i:8416 original size:138 final size:138
Alignment explanation
Indices: 8168--8418 Score: 296
Period size: 138 Copynumber: 1.8 Consensus size: 138
8158 AACAACTTAC
* **
8168 AGCGAGTAAGAAAGCTTTTGAAAGGATGAGTGACTATAAATGGACTTTTATTGCCAATGAATGAC
1 AGCGAGTAAGAAAGCTTTTGAAAGGATGAGTGACTATAAATGAACTTTTATTAACAATGAATGAC
* * * * *
8233 TTTTTCTTTACGTTTTTTAAGGTGAACATTCAATTATAATCTGTTTTAATTAACAATGTAAAACA
66 TTTTTCTTCACGTTTCTTAAGGAGAACATTCAACTACAATCTGTTTTAATTAACAATGTAAAACA
8298 CCATTTAA
131 CCATTTAA
* * *
8306 AGCGAGTAATAAGGCTTTT-AAAGGAAT-AGGTGACTATAAATGAACTTTTCTTAACAATGAATG
1 AGCGAGTAAGAAAGCTTTTGAAAGG-ATGA-GTGACTATAAATGAACTTTTATTAACAATGAATG
* * *
8369 GCTTTTTCTTCATGTTTCTTGAGGCAG-ACACTT-AACTACAA-CATGTTTTA
64 ACTTTTTCTTCACGTTTCTTAAGG-AGAACA-TTCAACTACAATC-TGTTTTA
8419 GCCAAAAATG
Statistics
Matches: 94, Mismatches: 14, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
137 7 0.07
138 84 0.89
139 3 0.03
ACGTcount: A:0.34, C:0.13, G:0.17, T:0.36
Consensus pattern (138 bp):
AGCGAGTAAGAAAGCTTTTGAAAGGATGAGTGACTATAAATGAACTTTTATTAACAATGAATGAC
TTTTTCTTCACGTTTCTTAAGGAGAACATTCAACTACAATCTGTTTTAATTAACAATGTAAAACA
CCATTTAA
Found at i:8545 original size:21 final size:21
Alignment explanation
Indices: 8504--8544 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
8494 TGAAGGGATG
8504 GTTGACTATAAATGGACTTTT
1 GTTGACTATAAATGGACTTTT
*
8525 GTTGCCTATAAATGG-CTTTT
1 GTTGACTATAAATGGACTTTT
8545 TCTTCACATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.24, C:0.12, G:0.20, T:0.44
Consensus pattern (21 bp):
GTTGACTATAAATGGACTTTT
Found at i:8695 original size:171 final size:170
Alignment explanation
Indices: 8297--9308 Score: 827
Period size: 171 Copynumber: 5.9 Consensus size: 170
8287 AATGTAAAAC
** * * **
8297 ACCATTTAAAGCGAGTAATAAGGCTTTTAAAGGAATAGGTGACTATAAAT-GAACTTTTCTTAAC
1 ACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGTATAGGTGACTATAAATAG-ACTTTTGTTGCC
** *** * * * * *
8361 AATGAATGGCTTTTTCTTCATGTTTCTTGAGGCAGACACTTAACTAC-AACATGTTTTAGCCAAA
65 AATGAATGGCTTTTTCTTCACATTTCTT-AAAAAGACAATCAATTACAAATATG-TTTAACCAAA
* * * *
8425 AATGTAAGAAAATTCAACCT-AAATCAATTATGAGTTTATAAA
128 AATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAA
* * * * * * *
8467 ACTATTTAAAGTGAGTAAAAAGACTTTTGAAGGGAT-GGTTGACTATAAATGGACTTTTGTTGCC
1 ACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGTATAGG-TGACTATAAATAGACTTTTGTTGCC
* * * *
8531 TATAAATGGCTTTTTCTTCACATTT-TTAGAAACAGACATTCAATTACAAAT-TGTTTGAAGCAA
65 AATGAATGGCTTTTTCTTCACATTTCTTA-AAA-AGACAATCAATTACAAATATGTTT-AACCAA
* * * * *
8594 AAATGTAAAAAAATTTAACTTAAAATCAATTTTTAGGTTATAAA
127 AAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAA
* * * * * * * * *
8638 ATCATTTAAAGCGAGCAACACGGCTTTTGAAGATATAGGT-AATCATAAATAGACTTTTGATACC
1 ACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGTATAGGTGACT-ATAAATAGACTTTTGTTGCC
* ** * * *
8702 AATGAATGGCTTTCTCTTCATGTTTCCTAAGGAAA-ACAATCAATTATAATATAT-TTTAACAAA
65 AATGAATGGCTTTTTCTTCACATTTCTTAA--AAAGACAATCAATTACAA-ATATGTTTAACCAA
* * *
8765 AAATATCAAAAAATCCAACTTAAAATCAATTATGAGAGTATAAA
127 AAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAA
** * * *
8809 ACCATTTAAAGCGAGTAATAAGGCTTTCG-AGGCCTAAGTGAC-AGTAAATAGACTTTT-ATACC
1 ACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGTATAGGTGACTA-TAAATAGACTTTTGTTGCC
* * * * * **
8871 AATGCATGGCTTTTGCTTCACATTTCTTAAGATAGACACTCAATTATAATATAT-TTTAATTAAA
65 AATGAATGGCTTTTTCTTCACATTTCTTAA-AAAGACAATCAATTACAA-ATATGTTTAACCAAA
* **
8935 AATATAAAAAAATTCAACTTAAAATCAATTATGAGACTGCAAA
128 AATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAA
* * * * *
8978 ATCATTTAAAGCGAGTAATAAAGCTTTCGAAGGTTTAGGTGACTATAAATAGGCTTTTTTTTTGC
1 ACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGTATAGGTGACTATAAATAGAC--TTTTGTTGC
* ** * *
9043 AAATGAAT-GCATTTTTCTTCACATTTCTTAAGGTCA-ACATTCAATTAC-AATCTGTTTTAACC
64 CAATGAATGGC-TTTTTCTTCACATTTCTTAA--AAAGACAATCAATTACAAATATG-TTTAACC
* * * * *
9105 AAAAGTATAAAACTATTTCAACCTAAAATCAATTATGAGATTATAAT
125 AAAAATATAAAA-AAATTCAACTTAAAATCAATTATGAGATTATAAA
* * * **
9152 ACCATTTAAAGTGAGTAATAAGGCTTTCAAAGGTATAGGTGACTATAAATAGACTTTTCTTGTTA
1 ACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGTATAGGTGACTATAAATAGACTTTTGTTGCCA
* * * * *
9217 ATGAATGG-TTTTTCTTCACGTTTCTCAAAGAAGATAATCAATTA-TAATCTGTTTGAACCAAAA
66 ATGAATGGCTTTTTCTTCACATTTCTTAAA-AAGACAATCAATTACAAATATGTTT-AACCAAAA
* *
9280 ATGTAAAAAAATTCAATTTAAAATCAATT
129 ATATAAAAAAATTCAACTTAAAATCAATT
9309 TTNNNNNNNN
Statistics
Matches: 679, Mismatches: 131, Indels: 64
0.78 0.15 0.07
Matches are distributed among these distances:
168 4 0.01
169 128 0.19
170 166 0.24
171 216 0.32
172 31 0.05
173 57 0.08
174 77 0.11
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.34
Consensus pattern (170 bp):
ACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGTATAGGTGACTATAAATAGACTTTTGTTGCCA
ATGAATGGCTTTTTCTTCACATTTCTTAAAAAGACAATCAATTACAAATATGTTTAACCAAAAAT
ATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAA
Found at i:9285 original size:992 final size:991
Alignment explanation
Indices: 7309--9287 Score: 2273
Period size: 992 Copynumber: 2.0 Consensus size: 991
7299 TATAAAACTA
* ** * ** *
7309 ATTTAAAGTGAGTAATAAGGCTTTCAAAGGCTTAGGCAACTATAAATGGACTTTTCTTTTCTATC
1 ATTTAAAGCGAGTAATAAGGCTTTCAAAGGAATAGGCAACTATAAATGAACTTTTCTTAACAATC
* * * **
7374 AATTGCTTTTTCATCATGTTTTCCAAGGAAAACATTCAATAATAATATGTTTTAACTGAAAATGT
66 AATGGCTTTTTCATCATGTTTTCCAAGGAAAACATTCAATAACAACATGTTTTAACCAAAAATGT
* *
7439 AAAAAATTCAACCTTAAATCAATTATGAGATTGTAAAACCATTTAAAGCAAGTAATAACGCTTTT
131 AAAAAATTCAACCTTAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAAGCTTTT
* **
7504 GACAACATGGAGACTGTAAATGGACTTTTCTTGCCAATAAATAACTTTTTCTTCATGTTTTCAGA
196 GACAACATGGAGACTATAAATGGACTTTTCTTGCCAATAAATAACTTTTTCTTCACATTTTCAGA
* * *
7569 AGCAAACATTCAATTACAATCTATTTTAAGTAAAAATATAAAAAAAATTAACTTAAAATCAATTT
261 AACAAACATTCAATTACAATCTATTTGAAGCAAAAATATAAAAAAAATTAACTTAAAATCAATTT
* * * * * * * *
7634 TGAGTTTATAAAATTATTTAAAGTGAGCAATAAGGTTTTTGAAGGAATGGGTGACTATAAATGGA
326 TGAGGTTATAAAATCATTTAAAGCGAGCAACAAGGCTTTTGAAGGAATAGGTAACTATAAATAGA
* * * * * * * *
7699 CTTTTCTTACAAATGAAAAGTTTTTTCTTTACATTTCTTAAGGTAAACATTCAATTATAATATGT
391 CTTTTCATACAAATGAAAAGCTTTCTCTTCACATTTCCTAAGGAAAACAATCAATTATAATATAT
** *
7764 TTTAACAAAAAAAGTAAAAAAATTTAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAAC
456 TTTAACAAAAAAAGTAAAAAAATCCAACTTAAAATCAATTATGAGAGTATAAAACCATTTAAAAC
* * * ** *
7829 GAGTAATAAGGCTTTCGAAGGCTTGAGTGACTATAAATGGACTTTTTATGTCAATGGATGACTTT
521 GAGTAATAAGGCTTTCGAAGGCCTAAGTGACTATAAATAGACTTTTTATACCAATGCATGACTTT
* ** * * * *
7894 TACTTTATGTTTCCCAAGGCAGACATTCAATTATATTATATTTTAAGCAAAAATGAAAACAAATT
586 TACTTCACATTTCCCAAGACAGACACTCAATTATAATATATTTTAAGCAAAAATGAAAAAAAATT
* *
7959 CAACTTAAAATCAATTAGGACATTATAAACCAATTTAAAGCGAGTAATAAGGCTGCTAAAGGCTT
651 CAACTTAAAATCAATTAGGACATCATAAACCAATTTAAAGCGAGTAATAAAGCTGCTAAAGGCTT
* *
8024 AGGCGACTATAAATAGACTTTTCTTATTAGTGAATGGCTTTTTCATCACGTTTCCAAAGGTAAAC
716 AGGCGACTATAAATAGACTTTTCTTATTAATGAATGGCTTTTTCATCACATTTCCAAAGGTAAAC
* * * *
8089 ATTCAATTATAATCTGTTTTAGCCAAAAATGTAATAAGATTGAACAAAAAATCAATTATGAGATT
781 ATTCAATTACAATCTGTTTTAACCAAAAATATAATAAGATTCAACAAAAAATCAATTATGAGATT
* * *
8154 ATAAAACAACTTACAGCGAGTAAGAAAGCTTTTGAAAGGATGAGTGACTATAAATGGACTTTTAT
846 ATAAAACAACTTAAAGCGAGTAAGAAAGCTTTTCAAAGGATGAGTGACTATAAATAGACTTTTAT
* ** ** * **
8219 TGCCAATGAATGACTTTTTCTTTACGTTTTTTAAGGTGAACATTCAATTATAATCTGTTTTAATT
911 TGCCAATGAATGACTTTTTCTTCACGTTTTCAAAGAAGAACATTCAATTATAATCTGTTTGAACC
*
8284 AACAATGTAAAACACC
976 AAAAATGTAAAACACC
* ** *
8300 ATTTAAAGCGAGTAATAAGGCTTTTAAAGGAATAGGTGACTATAAATGAACTTTTCTTAACAATG
1 ATTTAAAGCGAGTAATAAGGCTTTCAAAGGAATAGGCAACTATAAATGAACTTTTCTTAACAATC
* ** * * *
8365 AATGGCTTTTTCTTCATG-TTTCTTGAGGCAGACACTT-AACT-ACAACATGTTTTAGCCAAAAA
66 AATGGCTTTTTCATCATGTTTTC-CAAGGAAAACA-TTCAA-TAACAACATGTTTTAACCAAAAA
* * **
8427 TGTAAGAAAATTCAACC-TAAATCAATTATGAGTTTATAAAACTATTTAAAGTGAGTAA-AAAGA
128 TGTAA-AAAATTCAACCTTAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAAG-
** * * * **
8490 CTTTTGA-AGGGATGGTTGACTATAAATGGACTTTTGTTGCCTATAAATGGCTTTTTCTTCACAT
191 CTTTTGACA-ACATGG-AGACTATAAATGGACTTTTCTTGCCAATAAATAACTTTTTCTTCACAT
* * * * *
8554 TTTTAGAAACAGACATTCAATTACAAAT-TGTTTGAAGCAAAAATGTAAAAAAATTTAACTTAAA
254 TTTCAGAAACAAACATTCAATTAC-AATCTATTTGAAGCAAAAATATAAAAAAAATTAACTTAAA
* *
8618 ATCAATTTTTAGGTTATAAAATCATTTAAAGCGAGCAACACGGCTTTTGAA-GATATAGGTAA-T
318 ATCAATTTTGAGGTTATAAAATCATTTAAAGCGAGCAACAAGGCTTTTGAAGGA-ATAGGTAACT
* * ** **
8681 CATAAATAGACTTTTGATACCAATGAATGGCTTTCTCTTCATGTTTCCTAAGGAAAACAATCAAT
382 -ATAAATAGACTTTTCATACAAATGAAAAGCTTTCTCTTCACATTTCCTAAGGAAAACAATCAAT
*
8746 TATAATATATTTTAACAAAAAATA-TCAAAAAATCCAACTTAAAATCAATTATGAGAGTATAAAA
446 TATAATATATTTTAACAAAAAA-AGTAAAAAAATCCAACTTAAAATCAATTATGAGAGTATAAAA
*
8810 CCATTTAAAGCGAGTAATAAGGCTTTCG-AGGCCTAAGTGAC-AGTAAATAGAC-TTTTATACCA
510 CCATTTAAAACGAGTAATAAGGCTTTCGAAGGCCTAAGTGACTA-TAAATAGACTTTTTATACCA
* * ** * **
8872 ATGCATGGCTTTTGCTTCACATTTCTTAAGATAGACACTCAATTATAATATATTTTAATTAAAAA
574 ATGCATGACTTTTACTTCACATTTCCCAAGACAGACACTCAATTATAATATATTTTAAGCAAAAA
*
8937 T-ATAAAAAAATTCAACTTAAAATCAATTATGAGAC-TGCA-AAATC-ATTTAAAGCGAGTAATA
639 TGA-AAAAAAATTCAACTTAAAATCAATTA-G-GACAT-CATAAACCAATTTAAAGCGAGTAATA
* * * * * *
8998 AAGCT-TTCGAAGGTTTAGGTGACTATAAATAGGCTTTT-TTTTTGCAAATGAAT-GCATTTTTC
700 AAGCTGCT-AAAGGCTTAGGCGACTATAAATAGACTTTTCTTATT---AATGAATGGC-TTTTTC
* ** * * *
9060 TTCACATTTCTTAAGGTCAACATTCAATTACAATCTGTTTTAACCAAAAGTATAA-AACTATTTC
760 ATCACATTTCCAAAGGTAAACATTCAATTACAATCTGTTTTAACCAAAAATATAATAA-GA-TTC
** * * * * * *
9124 AACCTAAAATCAATTATGAGATTATAATACCATTTAAAGTGAGTAATAAGGC-TTTCAAAGGTAT
823 AACAAAAAATCAATTATGAGATTATAAAACAACTTAAAGCGAGTAAGAAAGCTTTTCAAAGG-AT
* ** *
9188 -AGGTGACTATAAATAGACTTTTCTTGTTAATGAATG-GTTTTTCTTCACGTTTCTCAAAGAAGA
887 GA-GTGACTATAAATAGACTTTTATTGCCAATGAATGACTTTTTCTTCACGTTT-TCAAAGAAGA
9251 TA-A-TCAATTATAATCTGTTTGAACCAAAAATGTAAAA
950 -ACATTCAATTATAATCTGTTTGAACCAAAAATGTAAAA
9288 AAATTCAATT
Statistics
Matches: 821, Mismatches: 140, Indels: 53
0.81 0.14 0.05
Matches are distributed among these distances:
989 6 0.01
990 141 0.17
991 179 0.22
992 406 0.49
993 88 0.11
994 1 0.00
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.35
Consensus pattern (991 bp):
ATTTAAAGCGAGTAATAAGGCTTTCAAAGGAATAGGCAACTATAAATGAACTTTTCTTAACAATC
AATGGCTTTTTCATCATGTTTTCCAAGGAAAACATTCAATAACAACATGTTTTAACCAAAAATGT
AAAAAATTCAACCTTAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAAGCTTTT
GACAACATGGAGACTATAAATGGACTTTTCTTGCCAATAAATAACTTTTTCTTCACATTTTCAGA
AACAAACATTCAATTACAATCTATTTGAAGCAAAAATATAAAAAAAATTAACTTAAAATCAATTT
TGAGGTTATAAAATCATTTAAAGCGAGCAACAAGGCTTTTGAAGGAATAGGTAACTATAAATAGA
CTTTTCATACAAATGAAAAGCTTTCTCTTCACATTTCCTAAGGAAAACAATCAATTATAATATAT
TTTAACAAAAAAAGTAAAAAAATCCAACTTAAAATCAATTATGAGAGTATAAAACCATTTAAAAC
GAGTAATAAGGCTTTCGAAGGCCTAAGTGACTATAAATAGACTTTTTATACCAATGCATGACTTT
TACTTCACATTTCCCAAGACAGACACTCAATTATAATATATTTTAAGCAAAAATGAAAAAAAATT
CAACTTAAAATCAATTAGGACATCATAAACCAATTTAAAGCGAGTAATAAAGCTGCTAAAGGCTT
AGGCGACTATAAATAGACTTTTCTTATTAATGAATGGCTTTTTCATCACATTTCCAAAGGTAAAC
ATTCAATTACAATCTGTTTTAACCAAAAATATAATAAGATTCAACAAAAAATCAATTATGAGATT
ATAAAACAACTTAAAGCGAGTAAGAAAGCTTTTCAAAGGATGAGTGACTATAAATAGACTTTTAT
TGCCAATGAATGACTTTTTCTTCACGTTTTCAAAGAAGAACATTCAATTATAATCTGTTTGAACC
AAAAATGTAAAACACC
Found at i:10155 original size:171 final size:171
Alignment explanation
Indices: 9462--11841 Score: 1497
Period size: 171 Copynumber: 13.9 Consensus size: 171
9452 NNNNNNNNNN
* * ** *
9462 AATCAATTATGAGATCATAAAACTATTTAAAGTAAGTAATAAGGCTTTTGAAGGCGT-T-AGTGA
1 AATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAAGC-TATAAGTGA
* * ** ** * *
9525 CTGTAAATGGACTTTTGTTATCAATGAATGGGGTTTTCTTCACGTTTCTAGAGGCAGACATTCAA
65 CTATAAATGGACTTTTCTTGCCAATGAATGGCTTTTTCTTCATGTTTCTA-AGGCAAACATTCAA
* * * * * *
9590 TTAGAATCTGTTTTAACCTAAAATGTAGAAAAATTCAGCTTAT
129 TTATAATCTATTTTAACCAAAAATGTAAAAAAATTCAACTTAA
* * ********** * * * *
9633 AATCAATTATGCGATTATAAAACTATTTAAAGCGAGTNNNNNNNNNNTCG-AAGGTTTGAGTGAC
1 AATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAAGCTATAAGTGAC
* *** * ** * * *
9697 TATAAATGGACTTTTCATATAAATGGATGGCTTTGGCTTCACGTTTCTCAAGACATACATTCAAT
66 TATAAATGGACTTTTCTTGCCAATGAATGGCTTTTTCTTCATGTTTCT-AAGGCAAACATTCAAT
* *********
9762 TATAATCTATTTTAACAAAAAATGTAAAAAAATNNNNNNNNN
130 TATAATCTATTTTAACCAAAAATGTAAAAAAATTCAACTTAA
* * * * * * * *
9804 NATCAATTATGAGATTATAAAACTATTTAAAGCGGGTAACAAGGCTTTCGAAGGCT-T-GGTTGC
1 AATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAAGCTATAAG-TGA
* * * * *
9867 CCATAAATAGG-CTTTTCTTGCCTATAAATGGGTTTTTTCTTCATGTTTCCTAAGGTAAACATTC
65 CTATAAAT-GGACTTTTCTTGCCAATGAAT-GGCTTTTTCTTCATGTTT-CTAAGGCAAACATTC
* * * * * *********
9931 GATTATAATATGTTTTAACCAAAAGTGTAAAACAATNNNNNNNNN
127 AATTATAATCTATTTTAACCAAAAATGTAAAAAAATTCAACTTAA
* * * * *
9976 NATCAATTATGAGATTATAAAACCACTTAAAGCGAGTAATAAAG-TTTTTAAAGATATAAGTGAC
1 AATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAAGCTATAAGTGAC
** * * * * *
10040 TATAAATGGACTTTTCTTATCAATGAATAGCTTTTTCTTCATATTTCTAAAGGCAGACAGTCAAC
66 TATAAATGGACTTTTCTTGCCAATGAATGGCTTTTTCTTCATGTTTCT-AAGGCAAACATTCAAT
* * *
10105 TATAATATGTTTTAACCAAATATGTAAAAAAATTCAACTTAA
130 TATAATCTATTTTAACCAAAAATGTAAAAAAATTCAACTTAA
* * ** *
10147 ATTCAATTATGAGATTGTAAAATTATTTAAAGCGAGTAATAAGGCTTTT-AAAGGCT-TAGGTGA
1 AATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAA-GCTATAAGTGA
* * *
10210 CTATAACTGGACTTTTCTTGCCAATGAATGGGTTTTTCTTCATGTTTCCTAAGACAAACATTCAA
65 CTATAAATGGACTTTTCTTGCCAATGAATGGCTTTTTCTTCATGTTT-CTAAGGCAAACATTCAA
** * *
10275 TTATAATCTATTTTAATGAAAAATGTAAAAACATTCAACCTAA
129 TTATAATCTATTTTAACCAAAAATGTAAAAAAATTCAACTTAA
********** *
10318 AATCAANNNNNNNNNNATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAAGCTA-AGGTGAC
1 AATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAAGCTATAAGTGAC
* * * *
10382 TATAAGT-GAGCTTTTCTTACAAATGAATGGGTTTTTCTTCATGTTTTCCT-AGGCAAACATTCA
66 TATAAATGGA-CTTTTCTTGCCAATGAATGGCTTTTTCTTCATG-TTT-CTAAGGCAAACATTCA
** * * **
10445 ATTATAATCTATTTTAACCAAAAATACAAAAAACTTGAACCAAA
128 ATTATAATCTATTTTAACCAAAAATGTAAAAAAATTCAACTTAA
* * **
10489 AAT-AATTATGAGATAATAAAACTATTTAAAGCGAGTAATAAGGCTTTTGAAAG-TATGGGTGAC
1 AATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAAGCTATAAGTGAC
* * * ** * * *
10552 TACAAATGGACTTTTGTTGTCAATGAATGGCTTTTTCTTCACATTTCTTGAGGTAGACACTT-AA
66 TATAAATGGACTTTTCTTGCCAATGAATGGCTTTTTCTTCATGTTTC-TAAGGCAAACA-TTCAA
** ** * * * *
10616 CCATACCCTATTCTAATCAAGAATG-AAAGAAAATTCAACCTAA
129 TTATAATCTATTTTAACCAAAAATGTAAA-AAAATTCAACTTAA
* * * * ** **
10659 AATCAATTAGGAGTTTATAAAACTATTTAAAGCGAGCAATAAGGCTTTT-AAAGGGATGGGTGAC
1 AATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAAGCTATAAGTGAC
* * * * **
10723 TATAAATAGACTTTTTTTGCCTATGAATGGC-TATTCTTTCATGTTT-TCAGAGGCAAACATTTG
66 TATAAATGGACTTTTCTTGCCAATGAATGGCTTTTTC-TTCATGTTTCT-A-AGGCAAACATTCA
* * *
10786 ATTATAATCTTTTTTACCCAAAATTGTAAAAAAATTCAACTTAA
128 ATTATAATCTATTTTAACCAAAAATGTAAAAAAATTCAACTTAA
* * * * * * *
10830 AATCAATTTTGAGGTTATAAAACCATTGAAAGCAAATAATAAGG-TTTTG-AAGGTATAAGTGGC
1 AATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAAGCTATAAGTGAC
* * * * * * * * *
10893 TCTAAATCGACTTTTCTTGTCAATGAAAGGGTTTTTCTTAATGTTTCTCGAGGTATACATTCAAT
66 TATAAATGGACTTTTCTTGCCAATGAATGGCTTTTTCTTCATGTTTCT-AAGGCAAACATTCAAT
* ** * *
10958 TATAATCTATTTAAATGAAAAATATAAAAAAATTAAACTTAA
130 TATAATCTATTTTAACCAAAAATGTAAAAAAATTCAACTTAA
* * * * * *
11000 AATTAATTATGAGATTAGAAAACCATTTAAAGAC-AATAATATGGCTTTCGAAGGCT-TGAA-TG
1 AATCAATTATGAGATTATAAAACCATTTAAAG-CGAGTAATAAGGCTTTTGAAAGCTAT-AAGTG
* * * * * * *
11062 ACAATAAATGAACTTTT-TGTACCAATGGATAG-TTTTTGCTTCATGTTTCTTAAGACAAACACT
64 ACTATAAATGGACTTTTCT-TGCCAATGAATGGCTTTTT-CTTCATGTTTC-TAAGGCAAACATT
* * * *
11125 AAATTATAATATATTTTAACCAAAATATGTAGAACAATTCAACTTAA
126 CAATTATAATCTATTTTAACCAAAA-ATGTAAAAAAATTCAACTTAA
* * * * * *
11172 AATCAATTACGAGATTATAAAACTATTTAATGCGAGTAATAAGGCTTTCGAACGCT-TAGGTGAC
1 AATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAAGCTATAAGTGAC
* * * * *
11236 TATAAAT-GAGC-TTTCTTGCCAATAAATGGCTTTTTCATCATGTTTTTGAAGGTAAACATTTAA
66 TATAAATGGA-CTTTTCTTGCCAATGAATGGCTTTTTCTTCATGTTTCT-AAGGCAAACATTCAA
* **********
11299 TTATAATCTGTTTTANNNNNNNNNNTAAAAAAATTCAACTTAA
129 TTATAATCTATTTTAACCAAAAATGTAAAAAAATTCAACTTAA
* ** * ** * * * * *
11342 AATCATTTATGAGGCTACAAAATTATTTAAAGTGAGTGATAAGCCTTTT-AAGAG-AATGAGT-A
1 AATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAA-AGCTATAAGTGA
* * * ** * * *
11404 GCTATAAAGGGACTTTTCATGCCAAAGAATAACCTTTTT-TTCACGTTTTCTGAGGCAGACATAT
65 -CTATAAATGGACTTTTCTTGCCAATGAAT-GGCTTTTTCTTCATG-TTTCTAAGGCAAACAT-T
* * * *
11468 -AATTACAATATGTTTTAACTAAAAATGTAAAAAAATTCAACTTAA
126 CAATTATAATCTATTTTAACCAAAAATGTAAAAAAATTCAACTTAA
********** * * ** *
11513 ANNNNNNNNNNAGATTATAAAATCATTTAAAACGAGTAATAAGGCTTTTG-AAGGAATAACTGAC
1 AATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAAGCTATAAGTGAC
* * * * * *
11577 TATAAATGAATTTTTCTTGCCAATGAATGACTTTTACTTCATGTTTCTCAAGGAAAACATACAAT
66 TATAAATGGACTTTTCTTGCCAATGAATGGCTTTTTCTTCATGTTTCT-AAGGCAAACATTCAAT
* * * *
11642 TATAATCTGTTTTAATCAAAAATGTAAAAACATTCAACTTAN
130 TATAATCTATTTTAACCAAAAATGTAAAAAAATTCAACTTAA
********* * *
11684 NNNNNNNNNTGAGATTATAAAACCAATTAAAGTGAGTAATAAGGCTTTTGAAAG-T-TCAAGTGA
1 AATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAAGCTAT-AAGTGA
* ** * * * * *
11747 CTATAAATGGATTTTTCTTATCAATGAATGGCTTTTCCTTCACGTCTCCTAATGCAGACATTCAA
65 CTATAAATGGACTTTTCTTGCCAATGAATGGCTTTTTCTTCATGT-TTCTAAGGCAAACATTCAA
* *
11812 TTATAATTTTTTTTAGA-CAAAAATGTAAAA
129 TTATAATCTATTTTA-ACCAAAAATGTAAAA
11842 NNNNNNNNNN
Statistics
Matches: 1709, Mismatches: 433, Indels: 134
0.75 0.19 0.06
Matches are distributed among these distances:
168 1 0.00
169 14 0.01
170 347 0.20
171 1086 0.64
172 258 0.15
173 3 0.00
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.34
Consensus pattern (171 bp):
AATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAAGCTATAAGTGAC
TATAAATGGACTTTTCTTGCCAATGAATGGCTTTTTCTTCATGTTTCTAAGGCAAACATTCAATT
ATAATCTATTTTAACCAAAAATGTAAAAAAATTCAACTTAA
Found at i:10654 original size:341 final size:341
Alignment explanation
Indices: 9462--11271 Score: 1053
Period size: 341 Copynumber: 5.3 Consensus size: 341
9452 NNNNNNNNNN
* ** *
9462 AATCAATTATGAGATCATAAAACTATTTAAAGTAAGTAATAAGGCTTTTGAAGGCGT-TA-GTGA
1 AATCAATTATGAGATTATAAAACTATTTAAAGCGAGTAATAAGGCTTTTGAA--AGTATAGGTGA
** * * * * * *
9525 CTGTAAATGGACTTTTGTTATCAATGAATGGGGTTTTCTTCACGTTT-CTAGAGGCAGACATTCA
64 CTACAAATGGACTTTTCTTGTCAATGAATGGGTTTTTCTTCACATTTCCTA-AGACAAACATTCA
** * * * * * * * * * * * * *
9589 ATTAGAATCTGTTTTAACCTAAAATGTAGAAAAATTCAGCTTATAATCAATTATGCGATTATAAA
128 ACCATAACCTATTCTAATCAAAAATGTAAAAAAATTCAACCTAAAATCAATTAGGAGTTTATAAA
* ********** ** * *
9654 ACTATTTAAAGCGAGTNNNNNNNNNNTCGAAGGT-TTGAGTGACTATAAATG-GACTTTTCATAT
193 ACCATTTAAAGCGAGTAATAAGGCTTTTAAAGATATAG-GTGACTATAAATGAGACTTTTC-T-T
* ** * * * * *
9717 A-AATGGATGGCTTTGGCTTCACG-TTTCTCAAGACATACATTCAATTATAATCTATTTTAACAA
255 ACAATGAATGG-TTTTTCTTCATGTTTTC-CTAGGCAAACATTCAATTATAATCTATTTTAACCA
*********
9780 AAAATGTAAAAAAATNNNNNNNNN
318 AAAATGTAAAAAAATTCAACTTAA
* * * * * *
9804 NATCAATTATGAGATTATAAAACTATTTAAAGCGGGTAACAAGGCTTTCGAAGGCT-T-GGTTGC
1 AATCAATTATGAGATTATAAAACTATTTAAAGCGAGTAATAAGGCTTTTGAAAG-TATAGG-TGA
* * * * * ** **
9867 CCATAAATAGG-CTTTTCTTGCCTATAAATGGGTTTTTTCTTCATGTTTCCTAAGGTAAACATTC
64 CTACAAAT-GGACTTTTCTTGTCAATGAATGGG-TTTTTCTTCACATTTCCTAAGACAAACATTC
* ** ** * * * * * ********** * *
9931 GATTATAATATGTTTTAACCAAAAGTGTAAAACAATNNNNNNNNNNATCAATTATGAGATTATAA
127 AACCATAACCTATTCTAATCAAAAATGTAAAAAAATTCAACCTAAAATCAATTAGGAGTTTATAA
* * * *
9996 AACCACTTAAAGCGAGTAATAAAGTTTTTAAAGATATAAGTGACTATAAATG-GACTTTTCTTAT
192 AACCATTTAAAGCGAGTAATAAGGCTTTTAAAGATATAGGTGACTATAAATGAGACTTTTCTTA-
* * * * * * *
10060 CAATGAATAGCTTTTTCTTCAT-ATTT-CTAAAGGCAGACAGTCAACTATAATATGTTTTAACCA
256 CAATGAAT-GGTTTTTCTTCATGTTTTCCT--AGGCAAACATTCAATTATAATCTATTTTAACCA
*
10123 AATATGTAAAAAAATTCAACTTAA
318 AAAATGTAAAAAAATTCAACTTAA
* * *
10147 ATTCAATTATGAGATTGTAAAATTATTTAAAGCGAGTAATAAGGCTTTT-AAAGGCT-TAGGTGA
1 AATCAATTATGAGATTATAAAACTATTTAAAGCGAGTAATAAGGCTTTTGAAA-G-TATAGGTGA
* * * **
10210 CTATAACTGGACTTTTCTTGCCAATGAATGGGTTTTTCTTCATGTTTCCTAAGACAAACATTCAA
64 CTACAAATGGACTTTTCTTGTCAATGAATGGGTTTTTCTTCACATTTCCTAAGACAAACATTCAA
** * * * * **********
10275 TTATAATCTATTTTAATGAAAAATGTAAAAACATTCAACCTAAAATCAANNNNNNNNNNATAAAA
129 CCATAACCTATTCTAATCAAAAATGTAAAAAAATTCAACCTAAAATCAATTAGGAGTTTATAAAA
* *
10340 CCATTTAAAGCGAGTAATAAGGCTTTTGAAAGCTA-AGGTGACTATAAGTGAG-CTTTTCTTACA
194 CCATTTAAAGCGAGTAATAAGGCTTTT-AAAGATATAGGTGACTATAAATGAGACTTTTCTTAC-
10403 AATGAATGGGTTTTTCTTCATGTTTTCCTAGGCAAACATTCAATTATAATCTATTTTAACCAAAA
257 AATGAAT-GGTTTTTCTTCATGTTTTCCTAGGCAAACATTCAATTATAATCTATTTTAACCAAAA
** * * **
10468 ATACAAAAAACTTGAACCAAA
321 ATGTAAAAAAATTCAACTTAA
* *
10489 AAT-AATTATGAGATAATAAAACTATTTAAAGCGAGTAATAAGGCTTTTGAAAGTATGGGTGACT
1 AATCAATTATGAGATTATAAAACTATTTAAAGCGAGTAATAAGGCTTTTGAAAGTATAGGTGACT
* * * * ** *
10553 ACAAATGGACTTTTGTTGTCAATGAATGGCTTTTTCTTCACATTTCTTGAGGTAGACACTT-AAC
66 ACAAATGGACTTTTCTTGTCAATGAATGGGTTTTTCTTCACATTTCCTAAGACAAACA-TTCAAC
* *
10617 CATACCCTATTCTAATCAAGAATG-AAAGAAAATTCAACCTAAAATCAATTAGGAGTTTATAAAA
130 CATAACCTATTCTAATCAAAAATGTAAA-AAAATTCAACCTAAAATCAATTAGGAGTTTATAAAA
* * ** * * * *
10681 CTATTTAAAGCGAGCAATAAGGCTTTTAAAGGGATGGGTGACTATAAAT-AGACTTTTTTTGCCT
194 CCATTTAAAGCGAGTAATAAGGCTTTTAAAGATATAGGTGACTATAAATGAGACTTTTCTT-ACA
* * ** ** * * *
10745 ATGAATGGCTATTCTTTCATGTTTTCAGAGGCAAACATTTGATTATAATCTTTTTTACCCAAAAT
258 ATGAATGGTTTTTC-TTCATGTTTTCCTAGGCAAACATTCAATTATAATCTATTTTAACCAAAAA
10810 TGTAAAAAAATTCAACTTAA
322 TGTAAAAAAATTCAACTTAA
* * * * * * * * *
10830 AATCAATTTTGAGGTTATAAAACCATTGAAAGCAAATAATAAGG-TTTTGAAGGTATAAGTGGCT
1 AATCAATTATGAGATTATAAAACTATTTAAAGCGAGTAATAAGGCTTTTGAAAGTATAGGTGACT
* * * * ** *
10894 -CTAAATCGACTTTTCTTGTCAATGAAAGGGTTTTTCTT-A-ATGTTTCTCGAGGTATACATTCA
66 AC-AAATGGACTTTTCTTGTCAATGAATGGGTTTTTCTTCACAT-TTCCT-AAGACAAACATTCA
** * * * * * * * * *
10956 ATTATAATCTATT-TAAATGAAAAATATAAAAAAATTAAACTTAAAATTAATTATGAGATTAGAA
128 ACCATAACCTATTCT-AATCAAAAATGTAAAAAAATTCAACCTAAAATCAATTAGGAGTTTATAA
* * * * * * *
11020 AACCATTTAAAGAC-AATAATATGGCTTTCGAAGGCT-T-GAATGACAATAAATGA-ACTTTT-T
192 AACCATTTAAAG-CGAGTAATAAGGCTTT-TAAAGATATAG-GTGACTATAAATGAGACTTTTCT
* * * * * * *
11080 GTACCAATGGATAGTTTTTGCTTCATG-TTTCTTAAGACAAACACTAAATTATAATATATTTTAA
254 -TA-CAATGAATGGTTTTT-CTTCATGTTTTCCT-AGGCAAACATTCAATTATAATCTATTTTAA
* *
11144 CCAAAATATGTAGAACAATTCAACTTAA
315 CCAAAA-ATGTAAAAAAATTCAACTTAA
* * * *
11172 AATCAATTACGAGATTATAAAACTATTTAATGCGAGTAATAAGGCTTTCGAACGCT-TAGGTGAC
1 AATCAATTATGAGATTATAAAACTATTTAAAGCGAGTAATAAGGCTTTTGAAAG-TATAGGTGAC
* * * *
11236 TATAAAT-GAGC-TTTCTTGCCAATAAATGGCTTTTTC
65 TACAAATGGA-CTTTTCTTGTCAATGAATGGGTTTTTC
11272 ATCATGTTTT
Statistics
Matches: 1142, Mismatches: 277, Indels: 98
0.75 0.18 0.06
Matches are distributed among these distances:
339 2 0.00
340 32 0.03
341 447 0.39
342 379 0.33
343 272 0.24
344 10 0.01
ACGTcount: A:0.37, C:0.13, G:0.14, T:0.34
Consensus pattern (341 bp):
AATCAATTATGAGATTATAAAACTATTTAAAGCGAGTAATAAGGCTTTTGAAAGTATAGGTGACT
ACAAATGGACTTTTCTTGTCAATGAATGGGTTTTTCTTCACATTTCCTAAGACAAACATTCAACC
ATAACCTATTCTAATCAAAAATGTAAAAAAATTCAACCTAAAATCAATTAGGAGTTTATAAAACC
ATTTAAAGCGAGTAATAAGGCTTTTAAAGATATAGGTGACTATAAATGAGACTTTTCTTACAATG
AATGGTTTTTCTTCATGTTTTCCTAGGCAAACATTCAATTATAATCTATTTTAACCAAAAATGTA
AAAAAATTCAACTTAA
Found at i:10702 original size:512 final size:510
Alignment explanation
Indices: 9980--11313 Score: 1379
Period size: 512 Copynumber: 2.6 Consensus size: 510
9970 NNNNNNNATC
* * * *
9980 AATTATGAGATTATAAAACCACTTAAAGCGAGTAATAAAG-TTTTTAAAGATATAAGTGACTATA
1 AATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAAGATATGAGTGACTATA
* * * *
10044 AATGGACTTTTCTTATCAATGAATAGCTTTTTCTTCATATTTCTAAAGGCAGACAGTCAACTATA
66 AATGGACTTTT-TTGTCAATGAATAGCTTTTTCTTCATATTTCTTAAGGCAGACACTAAACTATA
* * * * *
10109 ATATGTTTTAACCAAATATGTAAA-AAAATTCAACTTAAATTCAATTATGAGATTGTAAAATTAT
130 ATATATTTTAACCAAATATG-AAAGAAAATTCAACTTAAAATCAATTACGAGATTATAAAACTAT
*
10173 TTAAAGCGAGTAATAAGGCTTTTAAAGGCTTAGGTGACTATAACTGGACTTTTCTTGCCAATGAA
194 TTAAAGCGAGTAATAAGGCTTTTAAAGGCTTAGGTGACTATAAAT-GACTTTTCTTGCCAATGAA
* * **
10238 TGGGTTTTTCTTCATGTTTCCTAAGACAAACATTCAATTATAATCTATTTTAATGAAAAATGTAA
258 TGGGTTTTTCTTCATGTTT-CTAAGGCAAACATTTAATTATAATCTATTTTAACCAAAAATGTAA
* ********** * * *
10303 AAACATTCAACCTAAAATCAANNNNNNNNNNATAAAACCATTTAAAGCGAGTAATAAGGCTTTTG
322 AAAAATTCAACCTAAAATCAATTTTGAGGTTATAAAACCATTGAAAGCAAATAATAAGG-TTTTG
* * * *
10368 AAAGCTA-AGGTGACTATAAGT-GAGCTTTTCTT-ACAAATGAATGGGTTTTTCTTCATGTTT-T
386 -AAGCTATAAGTGACTATAAATCGA-CTTTTCTTGAC-AATGAAAGGGTTTTTCTTAATGTTTCT
* * * *
10429 CCTAGGCAAACATTCAATTATAATCTATTTTAACCAAAAATACAAAAAACTTGAAC-CAAAAAT
448 -CGAGGCAAACATTCAATTATAATCTATTTAAACCAAAAATACAAAAAAATTAAACTCAAAAAT
* * * *
10492 AATTATGAGATAATAAAACTATTTAAAGCGAGTAATAAGGCTTTTGAAAG-TATGGGTGACTACA
1 AATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAAGATATGAGTGACTATA
* * * * * *
10556 AATGGACTTTTGTTGTCAATGAATGGCTTTTTCTTCACATTTCTTGAGGTAGACACTTAACCATA
66 AATGGACTTTT-TTGTCAATGAATAGCTTTTTCTTCATATTTCTTAAGGCAGACACTAAACTATA
*** * * * * *
10621 CCCTATTCTAATCAAGA-ATGAAAGAAAATTCAACCTAAAATCAATTAGGAGTTTATAAAACTAT
130 ATATATTTTAACCAA-ATATGAAAGAAAATTCAACTTAAAATCAATTACGAGATTATAAAACTAT
* ** * * *
10685 TTAAAGCGAGCAATAAGGCTTTTAAAGGGATGGGTGACTATAAATAGACTTTTTTTGCCTATGAA
194 TTAAAGCGAGTAATAAGGCTTTTAAAGGCTTAGGTGACTATAAAT-GACTTTTCTTGCCAATGAA
* * * * * *
10750 T-GGCTATTCTTTCATGTTT-TCAGAGGCAAACATTTGATTATAATCTTTTTTACCCAAAATTGT
258 TGGGTTTTTC-TTCATGTTTCT-A-AGGCAAACATTTAATTATAATCTATTTTAACCAAAAATGT
*
10813 AAAAAAATTCAACTTAAAATCAATTTTGAGGTTATAAAACCATTGAAAGCAAATAATAAGGTTTT
320 AAAAAAATTCAACCTAAAATCAATTTTGAGGTTATAAAACCATTGAAAGCAAATAATAAGGTTTT
* * * *
10878 GAAGGTATAAGTGGCTCTAAATCGACTTTTCTTGTCAATGAAAGGGTTTTTCTTAATGTTTCTCG
385 GAAGCTATAAGTGACTATAAATCGACTTTTCTTGACAATGAAAGGGTTTTTCTTAATGTTTCTCG
* * ** * * *
10943 AGGTATACATTCAATTATAATCTATTTAAATGAAAAATATAAAAAAATTAAACTTAAAATT
450 AGGCAAACATTCAATTATAATCTATTTAAACCAAAAATACAAAAAAATTAAACTCAAAAAT
* * * * * * * *
11004 AATTATGAGATTAGAAAACCATTTAAAGAC-AATAATATGGCTTTCGAAGGCT-TGAATGACAAT
1 AATTATGAGATTATAAAACCATTTAAAG-CGAGTAATAAGGCTTTTGAAAGATATGAGTGACTAT
* * * * * *
11067 AAATGAAC-TTTTTGTACCAATGGATAG-TTTTTGCTTCATGTTTCTTAAGACAAACACTAAATT
65 AAATGGACTTTTTTGT--CAATGAATAGCTTTTT-CTTCATATTTCTTAAGGCAGACACTAAACT
*
11130 ATAATATATTTTAACCAAAATATG-TAGAACAATTCAACTTAAAATCAATTACGAGATTATAAAA
127 ATAATATATTTTAACC-AAATATGAAAGAA-AATTCAACTTAAAATCAATTACGAGATTATAAAA
* ** *
11194 CTATTTAATGCGAGTAATAAGGCTTTCGAACGCTTAGGTGACTATAAATGAGC-TTTCTTGCCAA
190 CTATTTAAAGCGAGTAATAAGGCTTTTAAAGGCTTAGGTGACTATAAATGA-CTTTTCTTGCCAA
* * * * * *
11258 TAAATGGCTTTTTCATCATGTTTTTGAAGGTAAACATTTAATTATAATCTGTTTTA
254 TGAATGGGTTTTTCTTCATGTTTCT-AAGGCAAACATTTAATTATAATCTATTTTA
11314 NNNNNNNNNN
Statistics
Matches: 667, Mismatches: 133, Indels: 44
0.79 0.16 0.05
Matches are distributed among these distances:
510 10 0.01
511 110 0.16
512 451 0.68
513 96 0.14
ACGTcount: A:0.38, C:0.13, G:0.14, T:0.35
Consensus pattern (510 bp):
AATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAAGATATGAGTGACTATA
AATGGACTTTTTTGTCAATGAATAGCTTTTTCTTCATATTTCTTAAGGCAGACACTAAACTATAA
TATATTTTAACCAAATATGAAAGAAAATTCAACTTAAAATCAATTACGAGATTATAAAACTATTT
AAAGCGAGTAATAAGGCTTTTAAAGGCTTAGGTGACTATAAATGACTTTTCTTGCCAATGAATGG
GTTTTTCTTCATGTTTCTAAGGCAAACATTTAATTATAATCTATTTTAACCAAAAATGTAAAAAA
ATTCAACCTAAAATCAATTTTGAGGTTATAAAACCATTGAAAGCAAATAATAAGGTTTTGAAGCT
ATAAGTGACTATAAATCGACTTTTCTTGACAATGAAAGGGTTTTTCTTAATGTTTCTCGAGGCAA
ACATTCAATTATAATCTATTTAAACCAAAAATACAAAAAAATTAAACTCAAAAAT
Found at i:13391 original size:171 final size:169
Alignment explanation
Indices: 12949--13726 Score: 626
Period size: 170 Copynumber: 4.6 Consensus size: 169
12939 NNNNNNNNNN
* *
12949 ATTATGAGATCATA-AAACTATTTAAAGTGAGTAATAAGGCTTTCGAAGGCT-TGAGTGACAATA
1 ATTATGAGAT--TACAAACTATTTAAAGTGAGTAATAAGGCTTTTGAAGG-TATGAGTGACTATA
* ** * * * *
13012 AATGGACTTGTT-GTGCCAATGGCT-AGCTTTTGCTTTATGTTTCTGAAGGTAGACATTCAATTA
63 AATGGACTT-TTCTTGCCAATGAATGA-CTTTTTCTTCATGTTTCTCAAGGTAAACATTCAATTA
* * *
13075 TAATATATTTTAACCAAAAATGTAAAAAAGATTTAACTTAAAATTA
126 TAATATATTTTAACCAAAAATGT-AAAAA-ATTCAACCTAAAATCA
* * * * * * * *
13121 ATTATGAGACTGCAAAGTTATTTAATGCGAGTAAGAA-GTTTGTTGAAGGCT-TGCGTGACTATA
1 ATTATGAGATTACAAA-CTATTTAAAGTGAGTAATAAGGCTT-TTGAAGG-TATGAGTGACTATA
* * * ** * *
13184 ACTAT-G--TTTTTTTCCCATTGAATGGGTTTCTCTTCATGTTTCTTAAGGTAAACATTCAATTA
63 A--ATGGACTTTTCTTGCCAATGAATGACTTTTTCTTCATGTTTCTCAAGGTAAACATTCAATTA
* * *
13246 CAATATGTTTTTACCAAAAATGTGAAAAAATTCAACCTAAAATCA
126 TAATATATTTTAACCAAAAATGT-AAAAAATTCAACCTAAAATCA
** * * * *
13291 ATTATGAGATTGTAATACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGTATAATTGACAATAAA
1 ATTATGAGATTACAA-ACTATTTAAAGTGAGTAATAAGGCTTTTGAAGGTATGAGTGACTATAAA
* * *
13356 TGGACTTTTCTTGTCAATGAATGACTTTTTCTTCATGTTTCTCAAAG-AAGACAGTCAATTATAA
65 TGGACTTTTCTTGCCAATGAATGACTTTTTCTTCATGTTTCTCAAGGTAA-ACATTCAATTATAA
* * * *
13420 TCTAATTAAACCAAAAATGTAAAAAATTCAACCAAAAATCA
129 TATATTTTAACCAAAAATGTAAAAAATTCAACCTAAAATCA
* * * *
13461 ATTATGAGTTTACAAAACTATTTAAA-TCGAGCAATAAGGCTTTCGAAGATATGAGTGACTATAA
1 ATTATGAGATTAC-AAACTATTTAAAGT-GAGTAATAAGGCTTTTGAAGGTATGAGTGACTATAA
* * * * * ** * * * * *
13525 GTGAACTTTTCTTGTCAATGACTAACTTTGACTTCATGTATCCCATGGCAGACATTCAATTATAA
64 ATGGACTTTTCTTGCCAATGAATGACTTTTTCTTCATGTTTCTCAAGGTAAACATTCAATTATAA
* * * * * *
13590 TTTGTTTTAACCAAGAATATAAAAGAATTCAACTTAAAATTA
129 TATATTTTAACCAAAAATGTAAAA-AATTCAACCTAAAATCA
* * * * * * *
13632 AATATGAGATTACAAACCATTTAAAGTAAGTAATAAGGCCTTTGAGGGAAT-AGGTGACTATCAA
1 ATTATGAGATTACAAACTATTTAAAGTGAGTAATAAGGCTTTTGAAGGTATGA-GTGACTATAAA
* * *
13696 TGGAGTTTTCTTACCAATGAATGCCTTTTTC
65 TGGACTTTTCTTGCCAATGAATGACTTTTTC
13727 NNNNNNNNNN
Statistics
Matches: 476, Mismatches: 110, Indels: 42
0.76 0.18 0.07
Matches are distributed among these distances:
168 2 0.00
169 4 0.01
170 259 0.54
171 164 0.34
172 44 0.09
173 1 0.00
174 2 0.00
ACGTcount: A:0.37, C:0.13, G:0.15, T:0.35
Consensus pattern (169 bp):
ATTATGAGATTACAAACTATTTAAAGTGAGTAATAAGGCTTTTGAAGGTATGAGTGACTATAAAT
GGACTTTTCTTGCCAATGAATGACTTTTTCTTCATGTTTCTCAAGGTAAACATTCAATTATAATA
TATTTTAACCAAAAATGTAAAAAATTCAACCTAAAATCA
Found at i:15633 original size:171 final size:171
Alignment explanation
Indices: 15034--16465 Score: 1419
Period size: 171 Copynumber: 8.4 Consensus size: 171
15024 AGGCAGACAA
* * * * * * * *
15034 TCAATTACATTCTTTTTTAAGC-AAAAATATAAAAAAATTCAACTTAAAATTAATTTTGTGGTTA
1 TCAATTATAATCTATTTTAA-CTAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTA
* * * * * * **
15098 TGAAATCATTTAAAGTAAGTAATAAGCCTTTTGAAGACATGGGTGACTATAAATACACTTTTCTT
65 TAAAATCATTTAAAGTGAGTAATAAGGCTTTCGAAGGCTTGGGTGACTATAAATGGACTTTTCTT
* ** **
15163 ATCAATGAATGGCTTTTT-TTCATATTTC-CTAAGCCAAACAT
130 GTCAATGAATGGCTTTTTCTTCACGTTTCTC-AAGGTAAACAT
*
15204 TGAATTATAATCTATTTTAACTAAAAATGTAAAACAAATTCAACTTAAAATCAATTATGAGATTA
1 TCAATTATAATCTATTTTAACTAAAAATGTAAAA-AAATTCAACTTAAAATCAATTATGAGATTA
* * * * *
15269 TAAAACCATTTAAAGTAAGTAATAAGGCTTTCGAAGGCTTGAGTGACAATAAATAGAC-TTT-TT
65 TAAAATCATTTAAAGTGAGTAATAAGGCTTTCGAAGGCTTGGGTGACTATAAATGGACTTTTCTT
* * *
15332 GTACCAATGGATGGCTTTTGCTTCACGTTTCTCAAAG-AAGACAT
130 GT--CAATGAATGGCTTTTTCTTCACGTTTCTCAAGGTAA-ACAT
* * * * *
15376 TTAATTATAATATATTTTAAC-AAAAATATAAAAAAATTCAACTTAAAATTAATTATGAGATTGT
1 TCAATTATAATCTATTTTAACTAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTAT
* * * * * *
15440 AAAACCATTTAAAGTGAGTAATATGGCTTTCGAAGGCTTGGTTGATTATAAATGGTCTTTTTTTG
66 AAAATCATTTAAAGTGAGTAATAAGGCTTTCGAAGGCTTGGGTGACTATAAATGGACTTTTCTTG
* * * **
15505 TCAATAAATAGCTTTTTGTTCACGTTTCTTGAGGTAAACAT
131 TCAATGAATGGCTTTTTCTTCACGTTTCTCAAGGTAAACAT
* ** * *
15546 TCAATTATAATATGCTTTAACTAAAAATGTAAACAAATTCCACTTAAAATCAATTATGAGATTAT
1 TCAATTATAATCTATTTTAACTAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTAT
* * * * *** *
15611 AAAATCATTTAAAGCGAGTAATAAGGCTTTTGATGGCTTGAGTGGGAATAAATAGACTTTT-TGT
66 AAAATCATTTAAAGTGAGTAATAAGGCTTTCGAAGGCTTGGGTGACTATAAATGGACTTTTCT-T
* * * *
15675 GTCAATGGATGGCTTCTACTTCACGTTTCTCAAGGTAGACAT
130 GTCAATGAATGGCTTTTTCTTCACGTTTCTCAAGGTAAACAT
* * * * * *
15717 TCAATTATAATATAATTTAACTAAAAAAGTAAAACAAATT-AACTTAAAATCAATTACGAGACTG
1 TCAATTATAATCTATTTTAACTAAAAATGTAAAA-AAATTCAACTTAAAATCAATTATGAGATTA
** *
15781 TAAAA-CTATTTAAAGCAAGTAATAAGGCTTTCGAAGGCTTGGGTGACTATAAATGGGCTTTTCT
65 TAAAATC-ATTTAAAGTGAGTAATAAGGCTTTCGAAGGCTTGGGTGACTATAAATGGACTTTTCT
* * * * *
15845 TGTCAATGAGTGGGTTTTTCTTTATGTTTCTCAAGGTACACAT
129 TGTCAATGAATGGCTTTTTCTTCACGTTTCTCAAGGTAAACAT
* * * * * * *
15888 TCAACTACAATCTGA-TTGAACAAAAAATGTAAAACAATTCAACCTGAAATCAATTATGAGATTA
1 TCAATTATAATCT-ATTTTAACTAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTA
* * *
15952 TAATATCATTTAAAGTGAGTAATAAGGCTTT-TAATGG-TAT-GGTCGACTATAAATGGACGTTT
65 TAAAATCATTTAAAGTGAGTAATAAGGCTTTCGAA-GGCT-TGGGT-GACTATAAATGGACTTTT
* *** * * *
16014 CTTGTCAATAAATAATTTTTTCTTCATGTTTCTC-ATG-AAAGAT
127 CTTGTCAATGAATGGCTTTTTCTTCACGTTTCTCAAGGTAAACAT
* * * * *
16057 AGTCAATTATAATCTGTTTGAACCAAAAATGTAAAAAAATTCATCCTAAAA-CTAATTATGAGAT
1 --TCAATTATAATCTATTTTAACTAAAAATGTAAAAAAATTCAACTTAAAATC-AATTATGAGAT
* * ** * * *
16121 TGTAAAACCATTTAAACCGAGTAATAAAGCTTTCGAAAGCATGGGTGACTATAAATGGACTTTTC
63 TATAAAATCATTTAAAGTGAGTAATAAGGCTTTCGAAGGCTTGGGTGACTATAAATGGACTTTTC
* * * * *
16186 TTGTCAATAAATGGCTTTGTCTTCATGTTTCCCATGGTAAACAT
128 TTGTCAATGAATGGCTTTTTCTTCACGTTTCTCAAGGTAAACAT
* * *
16230 TCAATTATAATTTATTTTAACT-AAAATG-AAAAAAATTCAACTTAAAATCAAATATGAGATTAC
1 TCAATTATAATCTATTTTAACTAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTAT
* ** *
16293 AAAATCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGAGTGACTATAAATGGACTTTTCTTG
66 AAAATCATTTAAAGTGAGTAATAAGGCTTTCGAAGGCTTGGGTGACTATAAATGGACTTTTCTTG
* * * *
16358 CCAATGAATGTCGTTTTCTTCACGTTT-TCATAGGCAAACAT
131 TCAATGAATGGCTTTTTCTTCACGTTTCTCA-AGGTAAACAT
** * * * *
16399 TCAATTATAATCCGTTTTAACCAAAAATATAAAAAAATTTAACTTAAAATCAATTATAAGATTAT
1 TCAATTATAATCTATTTTAACTAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTAT
16464 AA
66 AA
Statistics
Matches: 1041, Mismatches: 187, Indels: 67
0.80 0.14 0.05
Matches are distributed among these distances:
168 2 0.00
169 140 0.13
170 182 0.17
171 660 0.63
172 51 0.05
173 6 0.01
ACGTcount: A:0.39, C:0.12, G:0.13, T:0.35
Consensus pattern (171 bp):
TCAATTATAATCTATTTTAACTAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTAT
AAAATCATTTAAAGTGAGTAATAAGGCTTTCGAAGGCTTGGGTGACTATAAATGGACTTTTCTTG
TCAATGAATGGCTTTTTCTTCACGTTTCTCAAGGTAAACAT
Done.