Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399337.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2605.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4456
ACGTcount: A:0.13, C:0.37, G:0.36, T:0.12

Warning! 100 characters in sequence are not A, C, G, or T


Found at i:367 original size:15 final size:15

Alignment explanation


    Indices: 347--376  Score: 51
    Period size: 15  Copynumber: 2.0  Consensus size: 15

        337 GTGCGGTGTC

                  *        
        347 GCCCTCGTCGCGATG
          1 GCCCTCATCGCGATG

                           
        362 GCCCTCATCGCGATG
          1 GCCCTCATCGCGATG

        377 TTCTTCGGCA


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.10, C:0.40, G:0.30, T:0.20


Consensus pattern (15 bp):   
GCCCTCATCGCGATG

Found at i:3428 original size:27 final size:27

Alignment explanation


    Indices: 3398--3450  Score: 72
    Period size: 27  Copynumber: 2.0  Consensus size: 27

       3388 CCGACGTCGC

                                        
       3398 GCTCG-CCGGCGACGACCTCGCCCGCCT
          1 GCTCGACCGGCG-CGACCTCGCCCGCCT

                    *           *     
       3425 GCTCGACCTGCGCGACCTCGGCCGCC
          1 GCTCGACCGGCGCGACCTCGCCCGCC

       3451 ACACGATCGG


Statistics
Matches: 23,  Mismatches: 2, Indels: 2
        0.85            0.07        0.07

Matches are distributed among these distances:
  27   18  0.78
  28    5  0.22

ACGTcount: A:0.08, C:0.51, G:0.30, T:0.11


Consensus pattern (27 bp):   
GCTCGACCGGCGCGACCTCGCCCGCCT
Done.