Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018397274.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_228.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2969030
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 66526 characters in sequence are not A, C, G, or T
File 5 of 8
Found at i:1818718 original size:6 final size:6
Alignment explanation
Indices: 1818708--1818758 Score: 57
Period size: 6 Copynumber: 8.5 Consensus size: 6
1818698 TTGGTGCAAC
* * * * *
1818708 TGCTGC TGCTGC TGTTGT TGTTGT TGCTGT TGTTGT TGCTGT TGCTGT
1 TGCTGT TGCTGT TGCTGT TGCTGT TGCTGT TGCTGT TGCTGT TGCTGT
1818756 TGC
1 TGC
1818759 AGCAGCTGCT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 40 1.00
ACGTcount: A:0.00, C:0.16, G:0.33, T:0.51
Consensus pattern (6 bp):
TGCTGT
Found at i:1818737 original size:15 final size:15
Alignment explanation
Indices: 1818717--1818745 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
1818707 CTGCTGCTGC
1818717 TGCTGTTGTTGTTGT
1 TGCTGTTGTTGTTGT
1818732 TGCTGTTGTTGTTG
1 TGCTGTTGTTGTTG
1818746 CTGTTGCTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.00, C:0.07, G:0.34, T:0.59
Consensus pattern (15 bp):
TGCTGTTGTTGTTGT
Found at i:1818740 original size:12 final size:12
Alignment explanation
Indices: 1818723--1818758 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
1818713 CTGCTGCTGT
1818723 TGTTGTTGTTGC
1 TGTTGTTGTTGC
1818735 TGTTGTTGTTGC
1 TGTTGTTGTTGC
*
1818747 TGTTGCTGTTGC
1 TGTTGTTGTTGC
1818759 AGCAGCTGCT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.00, C:0.11, G:0.33, T:0.56
Consensus pattern (12 bp):
TGTTGTTGTTGC
Found at i:1821372 original size:18 final size:18
Alignment explanation
Indices: 1821349--1821384 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
1821339 AACAGGGACT
1821349 GGAATGCAACCAGTGACC
1 GGAATGCAACCAGTGACC
1821367 GGAATGCAACCAGTGACC
1 GGAATGCAACCAGTGACC
1821385 TATGTCATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.28, G:0.28, T:0.11
Consensus pattern (18 bp):
GGAATGCAACCAGTGACC
Found at i:1823063 original size:9 final size:9
Alignment explanation
Indices: 1823014--1823065 Score: 52
Period size: 9 Copynumber: 5.8 Consensus size: 9
1823004 ATTACGTGTG
*
1823014 GCTGCTGCT
1 GCTGCTGGT
*
1823023 GCTGCTGCT
1 GCTGCTGGT
*
1823032 GCTGGTGGT
1 GCTGCTGGT
*
1823041 GCTG-TGGAG
1 GCTGCTGG-T
1823050 GCTGCTGGT
1 GCTGCTGGT
1823059 GCTGCTG
1 GCTGCTG
1823066 AGGCATCATT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
8 3 0.08
9 31 0.84
10 3 0.08
ACGTcount: A:0.02, C:0.23, G:0.44, T:0.31
Consensus pattern (9 bp):
GCTGCTGGT
Found at i:1823068 original size:18 final size:18
Alignment explanation
Indices: 1823013--1823069 Score: 62
Period size: 18 Copynumber: 3.2 Consensus size: 18
1823003 CATTACGTGT
* *
1823013 GGCTGCTGCTGCTGCTGC
1 GGCTGCTGGTGCTGCTGA
* *
1823031 TGCTGGTGGTGCTG-TGGA
1 GGCTGCTGGTGCTGCT-GA
1823049 GGCTGCTGGTGCTGCTGA
1 GGCTGCTGGTGCTGCTGA
1823067 GGC
1 GGC
1823070 ATCATTGACT
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
17 1 0.03
18 29 0.94
19 1 0.03
ACGTcount: A:0.04, C:0.23, G:0.46, T:0.28
Consensus pattern (18 bp):
GGCTGCTGGTGCTGCTGA
Found at i:1823414 original size:12 final size:12
Alignment explanation
Indices: 1823383--1823417 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
1823373 TGATGGTATA
*
1823383 GCTGCTGCTGCT
1 GCTGCTGTTGCT
1823395 GCTGCTGTTGCT
1 GCTGCTGTTGCT
*
1823407 GTTGCTGTTGC
1 GCTGCTGTTGC
1823418 GGATGCACCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.00, C:0.26, G:0.34, T:0.40
Consensus pattern (12 bp):
GCTGCTGTTGCT
Found at i:1828803 original size:2 final size:2
Alignment explanation
Indices: 1828788--1828832 Score: 63
Period size: 2 Copynumber: 22.5 Consensus size: 2
1828778 CCTCTGCTTT
* * *
1828788 TA TA TA CA TT TA TA TA TA TA CA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1828830 TA T
1 TA T
1828833 TAATGCTTTC
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:1828805 original size:14 final size:14
Alignment explanation
Indices: 1828788--1828832 Score: 72
Period size: 14 Copynumber: 3.2 Consensus size: 14
1828778 CCTCTGCTTT
*
1828788 TATATACATTTATA
1 TATATACATATATA
1828802 TATATACATATATA
1 TATATACATATATA
*
1828816 TATATATATATATA
1 TATATACATATATA
1828830 TAT
1 TAT
1828833 TAATGCTTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 29 1.00
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (14 bp):
TATATACATATATA
Found at i:1829139 original size:9 final size:9
Alignment explanation
Indices: 1829127--1829166 Score: 55
Period size: 9 Copynumber: 4.3 Consensus size: 9
1829117 AATTTAAAAT
1829127 AAAAATATA
1 AAAAATATA
1829136 AAAAATAT-
1 AAAAATATA
1829144 AAAAATATA
1 AAAAATATA
1829153 ATAAAATAATA
1 A-AAAAT-ATA
1829164 AAA
1 AAA
1829167 TTTGTTTAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
8 8 0.29
9 9 0.32
10 7 0.25
11 4 0.14
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.23
Consensus pattern (9 bp):
AAAAATATA
Found at i:1829147 original size:17 final size:19
Alignment explanation
Indices: 1829124--1829166 Score: 72
Period size: 17 Copynumber: 2.4 Consensus size: 19
1829114 TTTAATTTAA
1829124 AATAAAAATATAA-AAAAT
1 AATAAAAATATAATAAAAT
1829142 -ATAAAAATATAATAAAAT
1 AATAAAAATATAATAAAAT
1829160 AATAAAA
1 AATAAAA
1829167 TTTGTTTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (19 bp):
AATAAAAATATAATAAAAT
Found at i:1842348 original size:18 final size:18
Alignment explanation
Indices: 1842300--1842360 Score: 61
Period size: 18 Copynumber: 3.4 Consensus size: 18
1842290 AAATCCTTTG
* *
1842300 AACAATTATGTTCGTTCA
1 AACAATTAAGTTTGTTCA
** *
1842318 AA-AATTACTTTTGTCCA
1 AACAATTAAGTTTGTTCA
1842335 AACAATTAAGTTTGTTCA
1 AACAATTAAGTTTGTTCA
*
1842353 AATAATTA
1 AACAATTA
1842361 TATGTTCAAA
Statistics
Matches: 34, Mismatches: 8, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
17 13 0.38
18 21 0.62
ACGTcount: A:0.39, C:0.13, G:0.08, T:0.39
Consensus pattern (18 bp):
AACAATTAAGTTTGTTCA
Found at i:1846646 original size:7 final size:7
Alignment explanation
Indices: 1846634--1846658 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
1846624 TAATATTAAA
1846634 AAATAAT
1 AAATAAT
1846641 AAATAAT
1 AAATAAT
1846648 AAATAAT
1 AAATAAT
1846655 AAAT
1 AAAT
1846659 TAATTTTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (7 bp):
AAATAAT
Found at i:1846698 original size:21 final size:23
Alignment explanation
Indices: 1846652--1846706 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 23
1846642 AATAATAAAT
* * *
1846652 AATAAATTAATTTTATTAAATTA
1 AATAAATAAATTTTATAAAATGA
1846675 AAT-AATAAATTTT-TAAAATGA
1 AATAAATAAATTTTATAAAATGA
1846696 AATAAATAAAT
1 AATAAATAAAT
1846707 GAAATAAATC
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
21 9 0.32
22 16 0.57
23 3 0.11
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (23 bp):
AATAAATAAATTTTATAAAATGA
Found at i:1846708 original size:13 final size:13
Alignment explanation
Indices: 1846690--1846731 Score: 59
Period size: 13 Copynumber: 3.3 Consensus size: 13
1846680 TAAATTTTTA
1846690 AAATGAAATAAAT
1 AAATGAAATAAAT
1846703 AAATGAAATAAAT
1 AAATGAAATAAAT
* *
1846716 CAATAAAATAAA-
1 AAATGAAATAAAT
1846728 AAAT
1 AAAT
1846732 ATTTTTTTAT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
12 3 0.12
13 23 0.88
ACGTcount: A:0.71, C:0.02, G:0.05, T:0.21
Consensus pattern (13 bp):
AAATGAAATAAAT
Found at i:1846773 original size:21 final size:22
Alignment explanation
Indices: 1846748--1846788 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
1846738 TTATTTAAAA
*
1846748 ATAAAAAATAAATG-GAAAAGG
1 ATAAAAAAGAAATGTGAAAAGG
1846769 ATAAAAAAGAAATGTGAAAA
1 ATAAAAAAGAAATGTGAAAA
1846789 CGTTTAAGTC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.68, C:0.00, G:0.17, T:0.15
Consensus pattern (22 bp):
ATAAAAAAGAAATGTGAAAAGG
Found at i:1847883 original size:28 final size:27
Alignment explanation
Indices: 1847829--1847884 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 27
1847819 ATCATCAATG
* * **
1847829 ATTAATATTTTAAATAAATTACCAATT
1 ATTAATATTTAAAATAAAATAAAAATT
1847856 ATTAATATTTAAAAATAAAATAAAAATT
1 ATTAATATTT-AAAATAAAATAAAAATT
1847884 A
1 A
1847885 ATCATAATAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
27 10 0.42
28 14 0.58
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39
Consensus pattern (27 bp):
ATTAATATTTAAAATAAAATAAAAATT
Found at i:1848065 original size:122 final size:116
Alignment explanation
Indices: 1847829--1848072 Score: 283
Period size: 122 Copynumber: 2.1 Consensus size: 116
1847819 ATCATCAATG
* *
1847829 ATTAATATTTTAAATAAATTACCAATTATTAATATTTAAAAATAAAATAAAAATTAATCATAATA
1 ATTAATATTTTAAATAAATAACCAATTATCAATATTTAAAAATAAAATAAAAATTAATCATAATA
********** * *
1847894 ATATTTAAATTAAATAAAATATTANNNNNNNNNNATATTAATGATTAAATT
66 ATATTTAAATTAAATAAAATATTAATATTTTAAAATACTAATGACTAAATT
* *
1847945 ATTAATATTTTAAATAAATAATCAATTATCAATATTTAAAAATAAAATAAATAAAATAATTTATC
1 ATTAATATTTTAAATAAATAACCAATTATCAATATTTAAAAAT---A-AAAT-AAA-AATTAATC
1848010 ATAATAATATTTAAATTAAATAAAATATTAATATTTTAAAATACTAATGACTAAATT
60 ATAATAATATTTAAATTAAATAAAATATTAATATTTTAAAATACTAATGACTAAATT
1848067 A-TAATA
1 ATTAATA
1848073 AAATATTAAA
Statistics
Matches: 106, Mismatches: 16, Indels: 7
0.82 0.12 0.05
Matches are distributed among these distances:
116 40 0.38
119 1 0.01
120 4 0.04
121 8 0.08
122 53 0.50
ACGTcount: A:0.54, C:0.03, G:0.01, T:0.38
Consensus pattern (116 bp):
ATTAATATTTTAAATAAATAACCAATTATCAATATTTAAAAATAAAATAAAAATTAATCATAATA
ATATTTAAATTAAATAAAATATTAATATTTTAAAATACTAATGACTAAATT
Found at i:1848130 original size:26 final size:24
Alignment explanation
Indices: 1848094--1848143 Score: 82
Period size: 26 Copynumber: 2.0 Consensus size: 24
1848084 ATTTAAATGG
1848094 TCAATTATTAATATTTTAAATAAATA
1 TCAATTATTAATA-TTTAAA-AAATA
1848120 TCAATTATTAATATTTAAAAAATA
1 TCAATTATTAATATTTAAAAAATA
1848144 AAAATAAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 5 0.21
25 6 0.25
26 13 0.54
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.44
Consensus pattern (24 bp):
TCAATTATTAATATTTAAAAAATA
Found at i:1848229 original size:16 final size:14
Alignment explanation
Indices: 1848182--1848311 Score: 98
Period size: 16 Copynumber: 9.4 Consensus size: 14
1848172 TTAAATTAAA
1848182 TAAAATATTAATGAT
1 TAAAATATTAAT-AT
*
1848197 TAAATTA-TAA-A-
1 TAAAATATTAATAT
1848208 TAAAATATTAATATTT
1 TAAAATATTAATA--T
1848224 TAAAATATTAATGAT
1 TAAAATATTAAT-AT
*
1848239 TAAATTA-TAA-A-
1 TAAAATATTAATAT
1848250 TAAAATATTAATATTT
1 TAAAATATTAATA--T
1848266 TAAAATATTAATGAT
1 TAAAATATTAAT-AT
*
1848281 TAAATTA-TAA-A-
1 TAAAATATTAATAT
1848292 TAAAATATTAATAT
1 TAAAATATTAATAT
*
1848306 TTAAAT
1 TAAAAT
1848312 TATCAATTAT
Statistics
Matches: 93, Mismatches: 7, Indels: 31
0.71 0.05 0.24
Matches are distributed among these distances:
11 18 0.19
12 12 0.13
13 3 0.03
14 14 0.15
15 20 0.22
16 24 0.26
17 2 0.02
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.42
Consensus pattern (14 bp):
TAAAATATTAATAT
Found at i:1848341 original size:5 final size:5
Alignment explanation
Indices: 1848331--1848357 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
1848321 TTAATATTTG
1848331 AAAAT AAAAT AAAAT AAAAT AAAAT AA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AA
1848358 TTGTTCATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:1848431 original size:42 final size:42
Alignment explanation
Indices: 1848380--1848458 Score: 108
Period size: 41 Copynumber: 1.9 Consensus size: 42
1848370 ATATTTAAAT
*
1848380 TAAATAAAATATTAATATTTTAAAATAGTAATGATTAAATTA
1 TAAATAAAATATTAATATTTTAAAATATTAATGATTAAATTA
* *
1848422 TAAATAAAATAATT-ATA-TTTAAATTATTAATTATTAA
1 TAAATAAAAT-ATTAATATTTTAAAATATTAATGATTAA
1848459 TATTTTANNN
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
41 17 0.52
42 13 0.39
43 3 0.09
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (42 bp):
TAAATAAAATATTAATATTTTAAAATATTAATGATTAAATTA
Found at i:1850919 original size:19 final size:19
Alignment explanation
Indices: 1850880--1850925 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
1850870 ATTTTGCGAT
*
1850880 TTGTTGATTTTGGTTTTTG
1 TTGTTGATTTTGGTTTCTG
1850899 TTGTTGATTTT-GTTGTCTG
1 TTGTTGATTTTGGTT-TCTG
1850918 TTGATTGA
1 TTG-TTGA
1850926 AAGCAAGAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
18 3 0.12
19 17 0.71
20 4 0.17
ACGTcount: A:0.09, C:0.02, G:0.26, T:0.63
Consensus pattern (19 bp):
TTGTTGATTTTGGTTTCTG
Found at i:1851952 original size:17 final size:17
Alignment explanation
Indices: 1851915--1851962 Score: 60
Period size: 17 Copynumber: 2.8 Consensus size: 17
1851905 TTTATTGAGA
**
1851915 TAATTAAATAATTTAGT
1 TAATTAAATAATTTAAC
1851932 TAATTAAATAATTTAAC
1 TAATTAAATAATTTAAC
*
1851949 TAATCAAAGTAATT
1 TAATTAAA-TAATT
1851963 AAGCAATTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
17 22 0.81
18 5 0.19
ACGTcount: A:0.50, C:0.04, G:0.04, T:0.42
Consensus pattern (17 bp):
TAATTAAATAATTTAAC
Found at i:1852008 original size:290 final size:289
Alignment explanation
Indices: 1851466--1852137 Score: 967
Period size: 290 Copynumber: 2.3 Consensus size: 289
1851456 AAGTGGTTTT
* ** *
1851466 ATTCATGAATTAGTAATTAATCAATTCCAAACCTAATAGTCAATTTAGTAAAATTTAATATTATT
1 ATTCATGTATTAGTAATTAATCAATTCCAAACCTAATAGAAAATTAAGTAAAATTTAATATTATT
* * * *
1851531 TATGAAAAATGTTTTAGTAATTAAGCAATTAACTAAATTAGTGATATTGTTTAATTTTAAATAAT
66 TATAAAAAATATTTTAGTAATTAAGCAATTAACTAAATTAGTAATATTGTTTAATGTTAAATAAT
*
1851596 ATTTAAATAAATCAAGGTGTTCAGTGAGTAATTAAATAGTTTAGTTAATTAAATAATTTAACTAA
131 ATTTAAATAAATCAAGGTGTTCAGTGAGTAATTAAATAATTTAGTTAATTAAATAATTTAACTAA
*
1851661 CCAAAGTAATTAAGCAATTATTTAAATTAGTAATATTATATATTATTTTAGTTATTTAAATTAAT
196 CCAAAGTAATTAAGCAATTATTTAAATTAGTAATATTATATATTATTTTACTTATTTAAATTAAT
* *
1851726 TTAGTGATTTTATTCATCTAATTATGAAG
261 TAAGTGATTTTATTCACCTAATTATGAAG
* *
1851755 ATTCATGTATTAGTAATTAATCAATTCCAAATCTACTAGAAAATTAAGTAAAATTTAATATTATT
1 ATTCATGTATTAGTAATTAATCAATTCCAAACCTAATAGAAAATTAAGTAAAATTTAATATTATT
*
1851820 TATTAAAAAATATTTTTGTAATTAAGCAATTAACTAAATTAGTAATATTGTTTAATGTTAAATAA
66 TA-TAAAAAATATTTTAGTAATTAAGCAATTAACTAAATTAGTAATATTGTTTAATGTTAAATAA
* * *
1851885 TATTTAAATAAATGAAGGTGTTTATTGAGATAATTAAATAATTTAGTTAATTAAATAATTTAACT
130 TATTTAAATAAATCAAGGTGTTCAGTGAG-TAATTAAATAATTTAGTTAATTAAATAATTTAACT
* * *
1851950 AATCAAAGTAATTAAGCAATTATTTAAATTAGTAATATTTTATTTTA-TTTACTTATTTAAATTA
194 AACCAAAGTAATTAAGCAATTATTTAAATTAGTAATATTATATATTATTTTACTTATTTAAATTA
* *
1852014 ATTAAGTGGTTTTATTTACCTAATTATGAAG
259 ATTAAGTGATTTTATTCACCTAATTATGAAG
* * ** * * * *
1852045 ATTGATTTATTAGTAATTAATCAATTTAAAATCTGATAGTAAATT---TAATA-TTAATATTATT
1 ATTCATGTATTAGTAATTAATCAATTCCAAACCTAATAGAAAATTAAGTAAAATTTAATATTATT
* *** *
1852106 TATGAAAAATCCATTAGTAACTAAGCAATTAA
66 TATAAAAAATATTTTAGTAATTAAGCAATTAA
1852138 TTAATTATAG
Statistics
Matches: 344, Mismatches: 37, Indels: 8
0.88 0.10 0.02
Matches are distributed among these distances:
285 24 0.07
286 13 0.04
287 4 0.01
289 61 0.18
290 164 0.48
291 78 0.23
ACGTcount: A:0.43, C:0.06, G:0.09, T:0.43
Consensus pattern (289 bp):
ATTCATGTATTAGTAATTAATCAATTCCAAACCTAATAGAAAATTAAGTAAAATTTAATATTATT
TATAAAAAATATTTTAGTAATTAAGCAATTAACTAAATTAGTAATATTGTTTAATGTTAAATAAT
ATTTAAATAAATCAAGGTGTTCAGTGAGTAATTAAATAATTTAGTTAATTAAATAATTTAACTAA
CCAAAGTAATTAAGCAATTATTTAAATTAGTAATATTATATATTATTTTACTTATTTAAATTAAT
TAAGTGATTTTATTCACCTAATTATGAAG
Found at i:1856814 original size:14 final size:14
Alignment explanation
Indices: 1856795--1856824 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
1856785 CTATCAGTTA
1856795 AAATTCTATTGCGT
1 AAATTCTATTGCGT
1856809 AAATTCTATTGCGT
1 AAATTCTATTGCGT
1856823 AA
1 AA
1856825 GTATACATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.33, C:0.13, G:0.13, T:0.40
Consensus pattern (14 bp):
AAATTCTATTGCGT
Found at i:1858875 original size:22 final size:22
Alignment explanation
Indices: 1858850--1858907 Score: 116
Period size: 22 Copynumber: 2.6 Consensus size: 22
1858840 ACATTAGTTA
1858850 TAAAAATTTATTTGGTTCAAAT
1 TAAAAATTTATTTGGTTCAAAT
1858872 TAAAAATTTATTTGGTTCAAAT
1 TAAAAATTTATTTGGTTCAAAT
1858894 TAAAAATTTATTTG
1 TAAAAATTTATTTG
1858908 AAACTGTTTA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 36 1.00
ACGTcount: A:0.41, C:0.03, G:0.09, T:0.47
Consensus pattern (22 bp):
TAAAAATTTATTTGGTTCAAAT
Found at i:1860330 original size:20 final size:19
Alignment explanation
Indices: 1860292--1860329 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
1860282 CACTGAATAG
1860292 AAACCCTTCAATTTTTTTT
1 AAACCCTTCAATTTTTTTT
1860311 AAACCCTTC-ATCTTTTTTT
1 AAACCCTTCAAT-TTTTTTT
1860330 TTTCTCTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 2 0.11
19 16 0.89
ACGTcount: A:0.24, C:0.24, G:0.00, T:0.53
Consensus pattern (19 bp):
AAACCCTTCAATTTTTTTT
Found at i:1863382 original size:20 final size:20
Alignment explanation
Indices: 1863357--1863394 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
1863347 TGCCCACCCG
*
1863357 CCTTATCTGTTTGTTTTTCA
1 CCTTATCTATTTGTTTTTCA
1863377 CCTTATCTATTTGTTTTT
1 CCTTATCTATTTGTTTTT
1863395 ATTTTTCTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.11, C:0.18, G:0.08, T:0.63
Consensus pattern (20 bp):
CCTTATCTATTTGTTTTTCA
Found at i:1868435 original size:22 final size:21
Alignment explanation
Indices: 1868404--1868447 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 21
1868394 ATGGGATGAA
*
1868404 GAAAAGTGAAAGAAGTAAAAAG
1 GAAAAATGAAAGAAG-AAAAAG
1868426 GAAAAATGAAAGAAGAAAAAG
1 GAAAAATGAAAGAAGAAAAAG
1868447 G
1 G
1868448 GGAAAAAGAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 7 0.33
22 14 0.67
ACGTcount: A:0.66, C:0.00, G:0.27, T:0.07
Consensus pattern (21 bp):
GAAAAATGAAAGAAGAAAAAG
Found at i:1868453 original size:22 final size:22
Alignment explanation
Indices: 1868404--1868458 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
1868394 ATGGGATGAA
1868404 GAAAAGTGAAAGAAGTAAAAAGG
1 GAAAA-TGAAAGAAGTAAAAAGG
*
1868427 AAAAATGAAAGAAG-AAAAAGGG
1 GAAAATGAAAGAAGTAAAAA-GG
*
1868449 GAAAAAGAAA
1 GAAAATGAAA
1868459 ACTGAAAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
21 5 0.18
22 19 0.68
23 4 0.14
ACGTcount: A:0.67, C:0.00, G:0.27, T:0.05
Consensus pattern (22 bp):
GAAAATGAAAGAAGTAAAAAGG
Found at i:1876162 original size:21 final size:21
Alignment explanation
Indices: 1876130--1876182 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 21
1876120 TACATAATGT
* *
1876130 TAAATACA-AAATTTAAATAA
1 TAAATAAATAAATCTAAATAA
*
1876150 TCAAAT-AATAAATCTACATAA
1 T-AAATAAATAAATCTAAATAA
1876171 TAAATAAATAAA
1 TAAATAAATAAA
1876183 AAAGAGACTC
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
20 6 0.22
21 21 0.78
ACGTcount: A:0.64, C:0.08, G:0.00, T:0.28
Consensus pattern (21 bp):
TAAATAAATAAATCTAAATAA
Found at i:1876441 original size:137 final size:137
Alignment explanation
Indices: 1876195--1876472 Score: 434
Period size: 137 Copynumber: 2.0 Consensus size: 137
1876185 AGAGACTCAC
* * * *
1876195 AATACAATGACCAAGAACATATTTAGGAATAAGGTTTTGATGCATAAGAATCTCATAATTATAAT
1 AATACAATGACCAAAAACATATTTAGGAACAAAGTTTTGATACATAAGAATCTCATAATTATAAT
* *
1876260 CTTTATAGTTTCTTTGAGAGGCCATTATGTTTCGAAGACTTTATTTACATAAGTCTCTCATAACT
66 CTTTATAATTTCTTTGAGAGGCCATTATGTTTCGAAGACTTTATTTACATAAATCTCTCATAACT
1876325 CTTTACA
131 CTTTACA
* *
1876332 AATACAATGATCAAAAACATATTTAGGAACAAAGTTTTGATACATAAGAATTTCATAATTATAAT
1 AATACAATGACCAAAAACATATTTAGGAACAAAGTTTTGATACATAAGAATCTCATAATTATAAT
*
1876397 CTTTATAATTTCTTT-ATGAGGCCATTATGTTT-TAAGAACTTTATTTACATAAATCTCTCATAA
66 CTTTATAATTTCTTTGA-GAGGCCATTATGTTTCGAAG-ACTTTATTTACATAAATCTCTCATAA
*
1876460 TTCTTTACA
129 CTCTTTACA
1876469 AATA
1 AATA
1876473 AGTTCATAGA
Statistics
Matches: 129, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
136 4 0.03
137 125 0.97
ACGTcount: A:0.38, C:0.13, G:0.10, T:0.38
Consensus pattern (137 bp):
AATACAATGACCAAAAACATATTTAGGAACAAAGTTTTGATACATAAGAATCTCATAATTATAAT
CTTTATAATTTCTTTGAGAGGCCATTATGTTTCGAAGACTTTATTTACATAAATCTCTCATAACT
CTTTACA
Found at i:1883255 original size:148 final size:148
Alignment explanation
Indices: 1883031--1883326 Score: 497
Period size: 148 Copynumber: 2.0 Consensus size: 148
1883021 GGTTGTTTTA
*
1883031 CAAGGAGTTGACTGATGTCTCTTTGGTTGCTTATGCACATACTGATTTAGGTGGTAATTGGGATG
1 CAAGGAGTGGACTGATGTCTCTTTGGTTGCTTATGCACATACTGATTTAGGTGGTAATTGGGATG
1883096 ATAGAAAGTCTACTTCCGGTTATGTTTTCTGTGTGGAGAAACAAGTATCTCAAAGCTAGACAAGA
66 ATAGAAAGTCTACTTCCGGTTATGTTTTCTGTGTGGAGAAACAAGTATCTCAAAGCTAGACAAGA
1883161 ATATGTTTGGTTTCAAAG
131 ATATGTTTGGTTTCAAAG
* *
1883179 CAAGGAGTGGACTGATGTTTCTTTGGTTGGC-TATGCACATACTGATTTAGGTGGTAATTTGGAT
1 CAAGGAGTGGACTGATGTCTCTTTGGTT-GCTTATGCACATACTGATTTAGGTGGTAATTGGGAT
* * * *
1883243 TATA-AAAGGTCTACTTCTGGTTATGTTTTTTGTGTGGAGAAACGAGTATCTCAAAGCTAGACAA
65 GATAGAAA-GTCTACTTCCGGTTATGTTTTCTGTGTGGAGAAACAAGTATCTCAAAGCTAGACAA
1883307 GAATATGTTTGGTTTCAAAG
129 GAATATGTTTGGTTTCAAAG
1883327 ACTCTTAGAT
Statistics
Matches: 139, Mismatches: 7, Indels: 4
0.93 0.05 0.03
Matches are distributed among these distances:
147 3 0.02
148 134 0.96
149 2 0.01
ACGTcount: A:0.27, C:0.12, G:0.25, T:0.35
Consensus pattern (148 bp):
CAAGGAGTGGACTGATGTCTCTTTGGTTGCTTATGCACATACTGATTTAGGTGGTAATTGGGATG
ATAGAAAGTCTACTTCCGGTTATGTTTTCTGTGTGGAGAAACAAGTATCTCAAAGCTAGACAAGA
ATATGTTTGGTTTCAAAG
Found at i:1894685 original size:22 final size:21
Alignment explanation
Indices: 1894660--1894700 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
1894650 TTCTGTCCGT
1894660 AATTAGAATCTAAAACTTTTTA
1 AATTAGAATCTAAAA-TTTTTA
* *
1894682 AATTATAATCTTAAATTTT
1 AATTAGAATCTAAAATTTT
1894701 AACAGATGAG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 4 0.24
22 13 0.76
ACGTcount: A:0.44, C:0.07, G:0.02, T:0.46
Consensus pattern (21 bp):
AATTAGAATCTAAAATTTTTA
Found at i:1899683 original size:62 final size:64
Alignment explanation
Indices: 1899565--1899696 Score: 169
Period size: 63 Copynumber: 2.1 Consensus size: 64
1899555 CCCCTAACAA
* * *
1899565 TTTTAAATTTTTTATAACTTATCTTTATTTTTTCGAAATCTTATAATTTCACCTTTATAA-AAT
1 TTTTAAAATTTTTATAACATATCTTTATTTTTTCGAAATCTTATAATTTCACCTTTACAATAAT
* * * ***
1899628 TTTTAAAATTTTTCTAACATATTTTTATTTTTT-GAAATTTTATAATTTTTTCTTTACAATAAT
1 TTTTAAAATTTTTATAACATATCTTTATTTTTTCGAAATCTTATAATTTCACCTTTACAATAAT
1899691 TTTTAA
1 TTTTAA
1899697 TTTAGTGATA
Statistics
Matches: 59, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
62 21 0.36
63 38 0.64
ACGTcount: A:0.32, C:0.08, G:0.02, T:0.58
Consensus pattern (64 bp):
TTTTAAAATTTTTATAACATATCTTTATTTTTTCGAAATCTTATAATTTCACCTTTACAATAAT
Found at i:1900450 original size:22 final size:22
Alignment explanation
Indices: 1900425--1900466 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
1900415 ATTAAGATTG
1900425 ATTT-TTTAAAATAATTTTTAAA
1 ATTTATTT-AAATAATTTTTAAA
*
1900447 ATTTATTTATATAATTTTTA
1 ATTTATTTAAATAATTTTTA
1900467 TATAAACTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 15 0.83
23 3 0.17
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (22 bp):
ATTTATTTAAATAATTTTTAAA
Found at i:1908177 original size:27 final size:28
Alignment explanation
Indices: 1908145--1908209 Score: 80
Period size: 28 Copynumber: 2.4 Consensus size: 28
1908135 GATGGTTTTT
*
1908145 AAGTGCTTAACA-CATAGG-GATGTTCCC
1 AAGTGCATAACATC-TAGGTGATGTTCCC
* *
1908172 AAGTGCATAACATCTAGGTGATTTTCCT
1 AAGTGCATAACATCTAGGTGATGTTCCC
1908200 AAGTGCATAA
1 AAGTGCATAA
1908210 TGTCCATATG
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
27 15 0.45
28 18 0.55
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.29
Consensus pattern (28 bp):
AAGTGCATAACATCTAGGTGATGTTCCC
Found at i:1908221 original size:28 final size:28
Alignment explanation
Indices: 1908167--1908267 Score: 78
Period size: 28 Copynumber: 3.6 Consensus size: 28
1908157 CATAGGGATG
* ** * *
1908167 TTCCCAAGTGCATAACATCTAGGTGATT
1 TTCCTAAGTGCATAATGTCCAGATGATT
*
1908195 TTCCTAAGTGCATAATGTCCATATGATGT
1 TTCCTAAGTGCATAATGTCCAGATGAT-T
* * * * *
1908224 TT-TTAAGTGCGTAACGTCCAGGTGATG
1 TTCCTAAGTGCATAATGTCCAGATGATT
*
1908251 TTCCTAAGTACATAATG
1 TTCCTAAGTGCATAATG
1908268 CTTAAGTGAC
Statistics
Matches: 55, Mismatches: 16, Indels: 4
0.73 0.21 0.05
Matches are distributed among these distances:
27 2 0.04
28 50 0.91
29 3 0.05
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.35
Consensus pattern (28 bp):
TTCCTAAGTGCATAATGTCCAGATGATT
Found at i:1908288 original size:56 final size:56
Alignment explanation
Indices: 1908171--1908293 Score: 133
Period size: 56 Copynumber: 2.2 Consensus size: 56
1908161 GGGATGTTCC
* * * **
1908171 CAAGTGCATAACATCTAGGTGATTTTCCTAAGTGCATAATGTCCATATGATGTTTT
1 CAAGTGCATAACATCCAGGTGATGTTCCTAAGTACATAATGTCCATATGACATTTT
* * * *
1908227 TAAGTGCGTAACGTCCAGGTGATGTTCCTAAGTACATAATG--CTTAAGTGACATTTT
1 CAAGTGCATAACATCCAGGTGATGTTCCTAAGTACATAATGTCCAT-A-TGACATTTT
1908283 CAAGTGCATAA
1 CAAGTGCATAA
1908294 TGCATAAGGA
Statistics
Matches: 54, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
54 2 0.04
55 1 0.02
56 51 0.94
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (56 bp):
CAAGTGCATAACATCCAGGTGATGTTCCTAAGTACATAATGTCCATATGACATTTT
Found at i:1911040 original size:18 final size:17
Alignment explanation
Indices: 1911017--1911056 Score: 53
Period size: 18 Copynumber: 2.3 Consensus size: 17
1911007 TACAAGAAAC
*
1911017 TATTTTTTTTATATATT
1 TATTTTATTTATATATT
*
1911034 GTATTTTATTTATTTATT
1 -TATTTTATTTATATATT
1911052 TATTT
1 TATTT
1911057 ATTATTGTGA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 5 0.25
18 15 0.75
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.75
Consensus pattern (17 bp):
TATTTTATTTATATATT
Found at i:1911055 original size:12 final size:14
Alignment explanation
Indices: 1911023--1911059 Score: 51
Period size: 12 Copynumber: 2.8 Consensus size: 14
1911013 AAACTATTTT
*
1911023 TTTTATATATTGTA
1 TTTTATTTATTGTA
1911037 TTTTATTTATT-TA
1 TTTTATTTATTGTA
1911050 -TTTATTTATT
1 TTTTATTTATT
1911060 ATTGTGAACT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 10 0.45
13 2 0.09
14 10 0.45
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.73
Consensus pattern (14 bp):
TTTTATTTATTGTA
Found at i:1913170 original size:2 final size:2
Alignment explanation
Indices: 1913163--1913190 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
1913153 GTATTTAACC
1913163 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1913191 CTTATTTGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:1913674 original size:41 final size:41
Alignment explanation
Indices: 1913593--1913910 Score: 170
Period size: 41 Copynumber: 7.9 Consensus size: 41
1913583 TCAATGTTTC
* * * ** *
1913593 TTCTCTTAGGGGTGTTTTGAATACTACTCACAATACTTCTTT
1 TTCTCTTA-AGGTGTTCTGAATACAACTTGCAATGCTTCTTT
* *
1913635 TTCTCTTAAGGTGTTCTGAATACAACTTGTAATGTTTC-TT
1 TTCTCTTAAGGTGTTCTGAATACAACTTGCAATGCTTCTTT
* *
1913675 CT-TCTT-AGACTGCTTC-GAATACAACTTGCAATGCTTCTTT
1 TTCTCTTAAG-GTG-TTCTGAATACAACTTGCAATGCTTCTTT
* * * * * * * *
1913715 TTCT-TGAA-ATGTTCTAAACATAACTCGTAATGCTTCTTC
1 TTCTCTTAAGGTGTTCTGAATACAACTTGCAATGCTTCTTT
* ** ** **
1913754 TTCTTTTGGGGTGTTCCAAATACAACTCACAATGCTT-TTT
1 TTCTCTTAAGGTGTTCTGAATACAACTTGCAATGCTTCTTT
* ** * *** *
1913794 CTTCT-TGAA-GTGTTCCAAATATAACTCATAACGCTTCTTT
1 -TTCTCTTAAGGTGTTCTGAATACAACTTGCAATGCTTCTTT
* * *
1913834 TTCTCTTAAGGTGCTTC-GAATACAACTTACAATACTTCTTC
1 TTCTCTTAAGGTG-TTCTGAATACAACTTGCAATGCTTCTTT
* * *
1913875 TTCTTTTAGGGTGTTTTGAATACAACTTGCAATGCT
1 TTCTCTTAAGGTGTTCTGAATACAACTTGCAATGCT
1913911 CCTTATTTTC
Statistics
Matches: 212, Mismatches: 50, Indels: 29
0.73 0.17 0.10
Matches are distributed among these distances:
38 5 0.02
39 77 0.36
40 22 0.10
41 97 0.46
42 11 0.05
ACGTcount: A:0.24, C:0.20, G:0.13, T:0.42
Consensus pattern (41 bp):
TTCTCTTAAGGTGTTCTGAATACAACTTGCAATGCTTCTTT
Found at i:1913747 original size:39 final size:39
Alignment explanation
Indices: 1913704--1913837 Score: 144
Period size: 39 Copynumber: 3.4 Consensus size: 39
1913694 TACAACTTGC
* * * *
1913704 AATGCTTCTTTTTCTTGAAATGTTCTAAACATAACTCGT
1 AATGCTTCTTTTTCTTGAAGTGTTCCAAATATAACTCAT
* ** * *
1913743 AATGCTTCTTCTTCTTTTGGGGTGTTCCAAATACAACTCAC
1 AATGCTTCTT-TT-TCTTGAAGTGTTCCAAATATAACTCAT
1913784 AATGCTT-TTTCTTCTTGAAGTGTTCCAAATATAACTCAT
1 AATGCTTCTTT-TTCTTGAAGTGTTCCAAATATAACTCAT
*
1913823 AACGCTTCTTTTTCT
1 AATGCTTCTTTTTCT
1913838 CTTAAGGTGC
Statistics
Matches: 76, Mismatches: 15, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
39 43 0.57
40 8 0.11
41 25 0.33
ACGTcount: A:0.25, C:0.21, G:0.11, T:0.43
Consensus pattern (39 bp):
AATGCTTCTTTTTCTTGAAGTGTTCCAAATATAACTCAT
Found at i:1913787 original size:80 final size:80
Alignment explanation
Indices: 1913685--1913879 Score: 223
Period size: 80 Copynumber: 2.4 Consensus size: 80
1913675 CTTCTTAGAC
* * * * *
1913685 TGCTTCGAATACAACTTGCAATGCTTCTTTTTCTTGAAATGTTCTAAACATAACTCGTAATGCTT
1 TGCTTCAAATACAACTTACAATGCTTCTTTTTCTTGAAATGTTCCAAACATAACTCATAACGCTT
* **
1913750 CTTCTTCTTTTGGGG
66 CTTCTTCTCTTAAGG
* * *
1913765 TG-TTCCAAATACAACTCACAATGCTT-TTTCTTCTTGAAGTGTTCCAAATATAACTCATAACGC
1 TGCTT-CAAATACAACTTACAATGCTTCTTT-TTCTTGAAATGTTCCAAACATAACTCATAACGC
*
1913828 TTCTTTTTCTCTTAAGG
64 TTCTTCTTCTCTTAAGG
* * *
1913845 TGCTTCGAATACAACTTACAATACTTCTTCTTCTT
1 TGCTTCAAATACAACTTACAATGCTTCTTTTTCTT
1913880 TTAGGGTGTT
Statistics
Matches: 95, Mismatches: 16, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
79 5 0.05
80 86 0.91
81 4 0.04
ACGTcount: A:0.25, C:0.22, G:0.11, T:0.42
Consensus pattern (80 bp):
TGCTTCAAATACAACTTACAATGCTTCTTTTTCTTGAAATGTTCCAAACATAACTCATAACGCTT
CTTCTTCTCTTAAGG
Found at i:1914746 original size:105 final size:105
Alignment explanation
Indices: 1914473--1914770 Score: 337
Period size: 105 Copynumber: 2.8 Consensus size: 105
1914463 TTATAAACGT
* * * * **
1914473 TAAAGCTTGAGGCTGAAATATAGGTGATGAATTATATGGTTAATGAATAAGCGATAAAGCTTACG
1 TAAAGCTTGAGGCTGAAATATAAGTGATGAATTATATGGTCAAAGAATGAGCGATAAAGCTTGTG
* * * * *
1914538 ACCAAGTACAACAATAACATTACAATCAAAGTAAGAGTGA
66 ACCAAGTGCAAAAATAACATTACAACCAAAATAAAAGTGA
* * ** * * *
1914578 TAAAACTTGCGATTGAAATATGAGTGATGAATTATACGGTCAAAGAATGAGTGATAAAGCTTGTG
1 TAAAGCTTGAGGCTGAAATATAAGTGATGAATTATATGGTCAAAGAATGAGCGATAAAGCTTGTG
* * * *
1914643 ACCGAGTGCAATAATAACATTATAGCCAAAATAAAAGTGA
66 ACCAAGTGCAAAAATAACATTACAACCAAAATAAAAGTGA
* * *
1914683 TAAAGCATGTGGCTGAAAAATAAGTGATGAATTATATGGTCAAAGAATGAGCGATAGAA-CTTGT
1 TAAAGCTTGAGGCTGAAATATAAGTGATGAATTATATGGTCAAAGAATGAGCGATA-AAGCTTGT
* *
1914747 GATCAAGTGAAAAAATAACATTAC
65 GACCAAGTGCAAAAATAACATTAC
1914771 GGCTGAAGTA
Statistics
Matches: 157, Mismatches: 35, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
105 155 0.99
106 2 0.01
ACGTcount: A:0.44, C:0.10, G:0.21, T:0.25
Consensus pattern (105 bp):
TAAAGCTTGAGGCTGAAATATAAGTGATGAATTATATGGTCAAAGAATGAGCGATAAAGCTTGTG
ACCAAGTGCAAAAATAACATTACAACCAAAATAAAAGTGA
Found at i:1914792 original size:105 final size:104
Alignment explanation
Indices: 1914473--1914810 Score: 329
Period size: 105 Copynumber: 3.2 Consensus size: 104
1914463 TTATAAACGT
* * * * **
1914473 TAAAGCTTGAGGCTGAAATATAGGTGATGAATTATATGGTTAATGAATAAGCGATAAAGCTTACG
1 TAAAGCTTGAGGCTGAAATATAAGTGATGAATTATATGGTCAAAGAATGAGCGATAAAGCTTGTG
* **
1914538 ACCAAGT-ACAACAATAACATTACAATCAAAGTAAGAGTGA
66 ACCAAGTGA-AAAAATAACATTACGCT-AAAGTAAGAGTGA
* * ** * * *
1914578 TAAAACTTGCGATTGAAATATGAGTGATGAATTATACGGTCAAAGAATGAGTGATAAAGCTTGTG
1 TAAAGCTTGAGGCTGAAATATAAGTGATGAATTATATGGTCAAAGAATGAGCGATAAAGCTTGTG
* * * * * * *
1914643 ACCGAGTGCAATAATAACATTATAGCCAAAATAAAAGTGA
66 ACCAAGTGAAAAAATAACATTA-CGCTAAAGTAAGAGTGA
* * *
1914683 TAAAGCATGTGGCTGAAAAATAAGTGATGAATTATATGGTCAAAGAATGAGCGATAGAA-CTTGT
1 TAAAGCTTGAGGCTGAAATATAAGTGATGAATTATATGGTCAAAGAATGAGCGATA-AAGCTTGT
* * *
1914747 GATCAAGTGAAAAAATAACATTACGGCTGAAGTAAGAGTGC
65 GACCAAGTGAAAAAATAACATTAC-GCTAAAGTAAGAGTGA
* * *
1914788 TAAAGCTTGCGGTTGAAAGATAA
1 TAAAGCTTGAGGCTGAAATATAA
1914811 CTTTTCTCTT
Statistics
Matches: 184, Mismatches: 45, Indels: 8
0.78 0.19 0.03
Matches are distributed among these distances:
105 182 0.99
106 2 0.01
ACGTcount: A:0.43, C:0.10, G:0.22, T:0.25
Consensus pattern (104 bp):
TAAAGCTTGAGGCTGAAATATAAGTGATGAATTATATGGTCAAAGAATGAGCGATAAAGCTTGTG
ACCAAGTGAAAAAATAACATTACGCTAAAGTAAGAGTGA
Found at i:1923190 original size:2 final size:2
Alignment explanation
Indices: 1923183--1923209 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
1923173 GAACTTGAAA
1923183 TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC T
1923210 TCTAAGATCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:1933320 original size:16 final size:17
Alignment explanation
Indices: 1933292--1933324 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
1933282 TGTAGTAATT
1933292 TTTTTTATATAATTTTA
1 TTTTTTATATAATTTTA
1933309 TTTTTTAT-TAATTTTA
1 TTTTTTATATAATTTTA
1933325 AAAATTATCA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (17 bp):
TTTTTTATATAATTTTA
Found at i:1945595 original size:19 final size:20
Alignment explanation
Indices: 1945571--1945615 Score: 67
Period size: 19 Copynumber: 2.3 Consensus size: 20
1945561 AAAATATAAA
1945571 AAAAAGTATTTAGAAG-GAG-
1 AAAAAGTATTTA-AAGAGAGT
1945590 AAAAAGTATTTAAAGAGAGT
1 AAAAAGTATTTAAAGAGAGT
1945610 AAAAAG
1 AAAAAG
1945616 ATCGTATTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
18 3 0.12
19 15 0.62
20 6 0.25
ACGTcount: A:0.58, C:0.00, G:0.22, T:0.20
Consensus pattern (20 bp):
AAAAAGTATTTAAAGAGAGT
Found at i:1951895 original size:17 final size:18
Alignment explanation
Indices: 1951869--1951908 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
1951859 ATAGTTTTAA
1951869 TTTA-ATTTTA-AA-AAT
1 TTTATATTTTATAAGAAT
1951884 TATTATATTTTATAAGAAT
1 T-TTATATTTTATAAGAAT
1951903 TTTATA
1 TTTATA
1951909 ATAACTTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
15 1 0.05
16 3 0.14
17 6 0.29
18 7 0.33
19 4 0.19
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (18 bp):
TTTATATTTTATAAGAAT
Found at i:1952844 original size:2 final size:2
Alignment explanation
Indices: 1952837--1952863 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
1952827 CATATACATT
1952837 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1952864 GAAGCCTTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:1955370 original size:2 final size:2
Alignment explanation
Indices: 1955363--1955393 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
1955353 ACTTAGAAGA
1955363 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1955394 GTAGACAATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:1956289 original size:6 final size:6
Alignment explanation
Indices: 1956278--1956307 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
1956268 AACCGGGTGT
*
1956278 TTTTTC TTTTTC TTTTTC TTTTTT TTTTTC
1 TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC
1956308 AAGTCTCTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (6 bp):
TTTTTC
Found at i:1957829 original size:4 final size:4
Alignment explanation
Indices: 1957820--1957852 Score: 50
Period size: 4 Copynumber: 8.2 Consensus size: 4
1957810 AGCCAAAGGC
1957820 AAAG AAAG AAAG AAAG AAAG AAAAG AAA- AAAG A
1 AAAG AAAG AAAG AAAG AAAG -AAAG AAAG AAAG A
1957853 GATGGTGGCG
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
3 3 0.11
4 20 0.74
5 4 0.15
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (4 bp):
AAAG
Found at i:1958773 original size:19 final size:18
Alignment explanation
Indices: 1958749--1958802 Score: 63
Period size: 19 Copynumber: 2.9 Consensus size: 18
1958739 CGGTCATATT
1958749 TTTTAATTTTATATTTTTA
1 TTTTAATTTTA-ATTTTTA
* *
1958768 TTTTAAATTTAATTATTA
1 TTTTAATTTTAATTTTTA
*
1958786 ATTTAATTATTAATTTT
1 TTTTAATT-TTAATTTT
1958803 ATTAATTATT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
18 12 0.41
19 17 0.59
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (18 bp):
TTTTAATTTTAATTTTTA
Found at i:1958790 original size:12 final size:12
Alignment explanation
Indices: 1958773--1958806 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
1958763 TTTTATTTTA
1958773 AATTTAATTATT
1 AATTTAATTATT
1958785 AATTTAATTATT
1 AATTTAATTATT
*
1958797 AATTTTATTA
1 AATTTAATTA
1958807 ATTATTTTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (12 bp):
AATTTAATTATT
Found at i:1960186 original size:15 final size:15
Alignment explanation
Indices: 1960134--1960186 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
1960124 ATTTGATATT
*
1960134 TTATAATGTAATATGA
1 TTATAA-GTAATGTGA
* *
1960150 TTATATGTAATGTAA
1 TTATAAGTAATGTGA
1960165 TTATAAGTAATGTGA
1 TTATAAGTAATGTGA
*
1960180 TTGTAAG
1 TTATAAG
1960187 AAAAATGACA
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
15 26 0.84
16 5 0.16
ACGTcount: A:0.40, C:0.00, G:0.17, T:0.43
Consensus pattern (15 bp):
TTATAAGTAATGTGA
Found at i:1960421 original size:15 final size:15
Alignment explanation
Indices: 1960400--1960687 Score: 75
Period size: 15 Copynumber: 18.9 Consensus size: 15
1960390 TTTTAATGTC
1960400 ATATATTTTATTTTT
1 ATATATTTTATTTTT
*
1960415 ATTTATTATTATAATTTT
1 ATATATT-TTAT--TTTT
*
1960433 CTATATTTTATTTTT
1 ATATATTTTATTTTT
1960448 AATATATTTATATTTTT
1 -ATATATTT-TATTTTT
*
1960465 -TAT-TATTATTTTTT
1 ATATATTTTA-TTTTT
* * * * * *
1960479 ATAAATATCACTCTA
1 ATATATTTTATTTTT
** *
1960494 ATATATTTT-TAATC
1 ATATATTTTATTTTT
* *
1960508 ATCTATTTTATTTGT
1 ATATATTTTATTTTT
* *
1960523 ATTTATTATTATAATCTT
1 ATATATT-TTAT--TTTT
1960541 ATATATTTTATTTTT
1 ATATATTTTATTTTT
* *
1960556 ATTTCTTTAATATATTTT
1 ATATATTT--TAT-TTTT
*
1960574 ATATA-TATATTTATT
1 ATATATTTTATTT-TT
1960589 -T-TATTTTACCTATATTAT
1 ATATATTTTA--T-T-TT-T
*
1960607 ATAAATTTTAATTTTT
1 ATATATTTT-ATTTTT
1960623 ATAT-TTTTA--TTT
1 ATATATTTTATTTTT
*
1960635 -TAT-TTTAATTTTT
1 ATATATTTTATTTTT
* * *
1960648 -GAT-TCTTA-TATT
1 ATATATTTTATTTTT
*
1960660 ATATATTTTATTTTA
1 ATATATTTTATTTTT
1960675 ATATA-TTTATTTT
1 ATATATTTTATTTT
1960688 AATTATAAAC
Statistics
Matches: 199, Mismatches: 44, Indels: 61
0.65 0.14 0.20
Matches are distributed among these distances:
11 7 0.04
12 6 0.03
13 14 0.07
14 35 0.18
15 55 0.28
16 24 0.12
17 23 0.12
18 27 0.14
19 2 0.01
20 5 0.03
21 1 0.01
ACGTcount: A:0.30, C:0.04, G:0.01, T:0.65
Consensus pattern (15 bp):
ATATATTTTATTTTT
Found at i:1960445 original size:54 final size:53
Alignment explanation
Indices: 1960387--1960556 Score: 150
Period size: 54 Copynumber: 3.2 Consensus size: 53
1960377 CTCTTAAATA
1960387 TATTTTTAATGTCATATATTTTATTTTTATTTATTATTATAATTTTCTATATTT
1 TATTTTTAAT-TCATATATTTTATTTTTATTTATTATTATAATTTTCTATATTT
* * ** * * *
1960441 TATTTTTAA-T-ATAT-TTATATTTTTTATTATTATTTTTTATAAATATCACTCTAATA
1 TATTTTTAATTCATATATTTTA-TTTTTA-T-TTA-TTATTAT-AAT-TTTCTATATTT
* * * *
1960497 TATTTTTAA-TCATCTATTTTATTTGTATTTATTATTATAATCTTATATATTT
1 TATTTTTAATTCATATATTTTATTTTTATTTATTATTATAATTTTCTATATTT
1960549 TATTTTTA
1 TATTTTTA
1960557 TTTCTTTAAT
Statistics
Matches: 90, Mismatches: 18, Indels: 18
0.71 0.14 0.14
Matches are distributed among these distances:
50 4 0.04
51 10 0.11
52 14 0.16
53 6 0.07
54 21 0.23
55 6 0.07
56 17 0.19
57 8 0.09
58 4 0.04
ACGTcount: A:0.30, C:0.05, G:0.01, T:0.64
Consensus pattern (53 bp):
TATTTTTAATTCATATATTTTATTTTTATTTATTATTATAATTTTCTATATTT
Found at i:1960548 original size:33 final size:34
Alignment explanation
Indices: 1960511--1960594 Score: 91
Period size: 35 Copynumber: 2.4 Consensus size: 34
1960501 TTTAATCATC
*
1960511 TATTTTATTTGTATTT-ATTATTATAATCT-TATA
1 TATTTTATTT-TATTTCATTAATATAATCTATATA
* * *
1960544 TATTTTATTTTTATTTCTTTAATATATTTTATATA
1 TATTTTA-TTTTATTTCATTAATATAATCTATATA
1960579 TATATTTATTTTATTT
1 TAT-TTTATTTTATTT
1960595 TACCTATATT
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
33 12 0.28
34 12 0.28
35 15 0.35
36 4 0.09
ACGTcount: A:0.29, C:0.02, G:0.01, T:0.68
Consensus pattern (34 bp):
TATTTTATTTTATTTCATTAATATAATCTATATA
Found at i:1960549 original size:108 final size:113
Alignment explanation
Indices: 1960331--1960556 Score: 363
Period size: 108 Copynumber: 2.0 Consensus size: 113
1960321 AAAATACAAG
1960331 TTTAATATATTTATATTTTTTATTATTAATTTTTATATAATATCATCTCTTAAATATATTTTTAA
1 TTTAATATATTTATATTTTTTATTATTAATTTTTATATAATATCATCTCTTAAATATATTTTTAA
* * *
1960396 TGTCATATATTTTATTTTTATTTATTATTATAATTTTCTATATTTTATT
66 -GTCATATATTTTATTTGTATTTATTATTATAATCTTATATATTTTATT
*
1960445 TTTAATATATTTATATTTTTTATTATTATTTTTTATA-AATATCA-CTC-T-AATATATTTTTAA
1 TTTAATATATTTATATTTTTTATTATTAATTTTTATATAATATCATCTCTTAAATATATTTTTAA
*
1960506 -TCATCTATTTTATTTGTATTTATTATTATAATCTTATATATTTTATT
66 GTCATATATTTTATTTGTATTTATTATTATAATCTTATATATTTTATT
1960553 TTTA
1 TTTA
1960557 TTTCTTTAAT
Statistics
Matches: 107, Mismatches: 5, Indels: 6
0.91 0.04 0.05
Matches are distributed among these distances:
108 47 0.44
110 13 0.12
111 1 0.01
112 3 0.03
113 7 0.07
114 36 0.34
ACGTcount: A:0.31, C:0.05, G:0.01, T:0.63
Consensus pattern (113 bp):
TTTAATATATTTATATTTTTTATTATTAATTTTTATATAATATCATCTCTTAAATATATTTTTAA
GTCATATATTTTATTTGTATTTATTATTATAATCTTATATATTTTATT
Found at i:1960551 original size:23 final size:24
Alignment explanation
Indices: 1960524--1960596 Score: 64
Period size: 22 Copynumber: 3.2 Consensus size: 24
1960514 TTTATTTGTA
1960524 TTTATTATTATAATC-TT-ATATAT
1 TTTATTATTAT-ATCTTTAATATAT
* *
1960547 TTTATTTTTATTTCTTTAATATAT
1 TTTATTATTATATCTTTAATATAT
* * *
1960571 TTTA-TA-TATATATTTATTTTAT
1 TTTATTATTATATCTTTAATATAT
1960593 TTTA
1 TTTA
1960597 CCTATATTAT
Statistics
Matches: 41, Mismatches: 7, Indels: 5
0.77 0.13 0.09
Matches are distributed among these distances:
22 18 0.44
23 13 0.32
24 10 0.24
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.67
Consensus pattern (24 bp):
TTTATTATTATATCTTTAATATAT
Found at i:1960669 original size:33 final size:32
Alignment explanation
Indices: 1960612--1960676 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 32
1960602 ATTATATAAA
* *
1960612 TTTTAATTTTTATATTTTTATTTTATTTTAAT
1 TTTTAATTCTTATATTTATATTTTATTTTAAT
*
1960644 TTTTGATTCTTATATTATATATTTTATTTTAAT
1 TTTTAATTCTTATATT-TATATTTTATTTTAAT
1960677 ATATTTATTT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 14 0.48
33 15 0.52
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.71
Consensus pattern (32 bp):
TTTTAATTCTTATATTTATATTTTATTTTAAT
Found at i:1960685 original size:26 final size:27
Alignment explanation
Indices: 1960585--1960685 Score: 72
Period size: 26 Copynumber: 3.9 Consensus size: 27
1960575 TATATATATT
*
1960585 TATTTT-ATTTTACCTATA-TTA-TATA
1 TATTTTAATTTTA-ATATATTTATTATA
* * *
1960610 AATTTTAATTTTTATATTTTTATT-T-
1 TATTTTAATTTTAATATATTTATTATA
* *
1960635 TATTTTAATTTTTGAT-TCTTATATTATA
1 TATTTTAA-TTTTAATATATT-TATTATA
1960663 TATTTT-ATTTTAATATATTTATT
1 TATTTTAATTTTAATATATTTATT
1960686 TTAATTATAA
Statistics
Matches: 59, Mismatches: 9, Indels: 15
0.71 0.11 0.18
Matches are distributed among these distances:
25 18 0.31
26 29 0.49
27 6 0.10
28 6 0.10
ACGTcount: A:0.30, C:0.03, G:0.01, T:0.66
Consensus pattern (27 bp):
TATTTTAATTTTAATATATTTATTATA
Found at i:1960694 original size:15 final size:15
Alignment explanation
Indices: 1960660--1960690 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
1960650 TTCTTATATT
1960660 ATATATTTTATTTTA
1 ATATATTTTATTTTA
1960675 ATATA-TTTATTTTA
1 ATATATTTTATTTTA
1960689 AT
1 AT
1960691 TATAAACAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.69
15 5 0.31
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (15 bp):
ATATATTTTATTTTA
Found at i:1961058 original size:17 final size:17
Alignment explanation
Indices: 1961033--1961066 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
1961023 GTAAAATAAT
* *
1961033 TTGATTTAATTAGTTTA
1 TTGAATTAATTAATTTA
1961050 TTGAATTAATTAATTTA
1 TTGAATTAATTAATTTA
1961067 AAATATTTAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.35, C:0.00, G:0.09, T:0.56
Consensus pattern (17 bp):
TTGAATTAATTAATTTA
Found at i:1965255 original size:16 final size:15
Alignment explanation
Indices: 1965234--1965273 Score: 62
Period size: 16 Copynumber: 2.6 Consensus size: 15
1965224 ATTAATTTTT
1965234 TAAAAATAACAAAAA
1 TAAAAATAACAAAAA
*
1965249 GTAAAAATAATAAAAA
1 -TAAAAATAACAAAAA
1965265 TAAAAATAA
1 TAAAAATAA
1965274 AATAAAAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 9 0.39
16 14 0.61
ACGTcount: A:0.78, C:0.03, G:0.03, T:0.17
Consensus pattern (15 bp):
TAAAAATAACAAAAA
Found at i:1965263 original size:15 final size:16
Alignment explanation
Indices: 1965234--1965284 Score: 59
Period size: 15 Copynumber: 3.2 Consensus size: 16
1965224 ATTAATTTTT
*
1965234 TAAAAATAACAAAAAG
1 TAAAAATAACAAAAAA
*
1965250 TAAAAATAA-TAAAAA
1 TAAAAATAACAAAAAA
*
1965265 TAAAAATAAAATAAAAA
1 TAAAAATAACA-AAAAA
1965282 TAA
1 TAA
1965285 GAATCAAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
15 13 0.43
16 9 0.30
17 8 0.27
ACGTcount: A:0.78, C:0.02, G:0.02, T:0.18
Consensus pattern (16 bp):
TAAAAATAACAAAAAA
Found at i:1965266 original size:6 final size:6
Alignment explanation
Indices: 1965257--1965312 Score: 60
Period size: 6 Copynumber: 9.5 Consensus size: 6
1965247 AAGTAAAAAT
* * * *
1965257 AATAAA AATAAA AAT-AA AATAAA AATAAG AATCAA AATCAA AATCAA
1 AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA
*
1965304 AATCAA AAT
1 AATAAA AAT
1965313 GCCTATGCAT
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
5 5 0.11
6 41 0.89
ACGTcount: A:0.73, C:0.07, G:0.02, T:0.18
Consensus pattern (6 bp):
AATAAA
Found at i:1965277 original size:17 final size:17
Alignment explanation
Indices: 1965234--1965312 Score: 74
Period size: 18 Copynumber: 4.7 Consensus size: 17
1965224 ATTAATTTTT
* *
1965234 TAAAAATAACA-AAAAG
1 TAAAAATAAAATAAAAA
1965250 TAAAAAT--AATAAAAA
1 TAAAAATAAAATAAAAA
1965265 TAAAAATAAAATAAAAA
1 TAAAAATAAAATAAAAA
* *
1965282 TAAGAATCAAAATCAAAA
1 TAAAAAT-AAAATAAAAA
*
1965300 TCAAAATCAAAAT
1 TAAAAAT-AAAAT
1965313 GCCTATGCAT
Statistics
Matches: 53, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
14 1 0.02
15 11 0.21
16 7 0.13
17 14 0.26
18 20 0.38
ACGTcount: A:0.73, C:0.06, G:0.03, T:0.18
Consensus pattern (17 bp):
TAAAAATAAAATAAAAA
Found at i:1969947 original size:116 final size:117
Alignment explanation
Indices: 1969723--1969951 Score: 334
Period size: 116 Copynumber: 2.0 Consensus size: 117
1969713 GTATGCGGAA
* * * *
1969723 TCCAATATTCAAAAAGGATGTTCTTTTTGGAATGGTAGCGCAGACTGTGATTTTTGAGAAGATGT
1 TCCAATATTCAAAAAGGATATTCTTTTTGGAATGGTAGCGCACACTGTGATTTCTGAGAAGATGG
*
1969788 AGAGAGCCTGTGAAATATTAGTCTATATTTGGGGTGTAAGCACCATTTGTGG
66 AGAGAACCTGTGAAATATTAGTCTATATTTGGGGTGTAAGCACCATTTGTGG
* * *
1969840 TCCAATATTC-AAAGGGATATTCTTTTTGGACTGGTAGTGCACACTGTGATTTCTGAGAAGATGG
1 TCCAATATTCAAAAAGGATATTCTTTTTGGAATGGTAGCGCACACTGTGATTTCTGAGAAGATGG
** * * *
1969904 AGAGAATTTTTGAAATGTTAGTCTATATTTGGGGTGTGAGCACCATTT
66 AGAGAACCTGTGAAATATTAGTCTATATTTGGGGTGTAAGCACCATTT
1969952 TGTGTTTTCA
Statistics
Matches: 99, Mismatches: 13, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
116 89 0.90
117 10 0.10
ACGTcount: A:0.28, C:0.11, G:0.26, T:0.35
Consensus pattern (117 bp):
TCCAATATTCAAAAAGGATATTCTTTTTGGAATGGTAGCGCACACTGTGATTTCTGAGAAGATGG
AGAGAACCTGTGAAATATTAGTCTATATTTGGGGTGTAAGCACCATTTGTGG
Found at i:1975095 original size:17 final size:16
Alignment explanation
Indices: 1975066--1975104 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
1975056 TAAATCAAAT
1975066 ATTTA-AGTGTAAAAA
1 ATTTATAGTGTAAAAA
1975081 ATTTATAGTGTTAAAAA
1 ATTTATAGTG-TAAAAA
*
1975098 ATATATA
1 ATTTATA
1975105 TAAATATTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 5 0.24
16 4 0.19
17 12 0.57
ACGTcount: A:0.51, C:0.00, G:0.10, T:0.38
Consensus pattern (16 bp):
ATTTATAGTGTAAAAA
Found at i:1975397 original size:108 final size:108
Alignment explanation
Indices: 1975278--1975487 Score: 271
Period size: 108 Copynumber: 1.9 Consensus size: 108
1975268 TAAGATGACT
* *
1975278 AAATATATTGATTTAGTTATAACTTTCACAATTTACAAATATACATT-TTTTAAAAATTATTCAA
1 AAATATATTGATTTAGTTACAACTTTCACAATTTACAAATAAACATTCTTTT-AAAATTATTCAA
* *
1975342 CTTTTA-CTCAATTTACATTCTATTAAAATTTACTCAAATTAGCA
65 CTCTTACCT-AATCTACATTCTATTAAAATTTACTCAAATTAGCA
* * * * **
1975386 AAATATGTTGATTTAGTTACAATTTTTACAATTTACAAATAAATATTCTTTTGGAATTATTCAAC
1 AAATATATTGATTTAGTTACAACTTTCACAATTTACAAATAAACATTCTTTTAAAATTATTCAAC
* * *
1975451 TCTTACCTAATCTACCTTTTATTTAAATTTACTCAAA
66 TCTTACCTAATCTACATTCTATTAAAATTTACTCAAA
1975488 ATTTCTTATA
Statistics
Matches: 87, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
108 81 0.93
109 6 0.07
ACGTcount: A:0.39, C:0.13, G:0.04, T:0.44
Consensus pattern (108 bp):
AAATATATTGATTTAGTTACAACTTTCACAATTTACAAATAAACATTCTTTTAAAATTATTCAAC
TCTTACCTAATCTACATTCTATTAAAATTTACTCAAATTAGCA
Found at i:1976850 original size:39 final size:37
Alignment explanation
Indices: 1976807--1976879 Score: 101
Period size: 38 Copynumber: 1.9 Consensus size: 37
1976797 TCGTATCCAT
1976807 ATCATAACTAATTTATAAACTTATATATTTTGTATTAAC
1 ATCATAACTAATTT-TAAACTTATATATTTT-TATTAAC
* * *
1976846 ATCATAAGTAATTTTAATCTTATTTATTTTTATT
1 ATCATAACTAATTTTAAACTTATATATTTTTATT
1976880 TTTATTTTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
37 4 0.13
38 14 0.45
39 13 0.42
ACGTcount: A:0.37, C:0.08, G:0.03, T:0.52
Consensus pattern (37 bp):
ATCATAACTAATTTTAAACTTATATATTTTTATTAAC
Found at i:1977124 original size:19 final size:18
Alignment explanation
Indices: 1977100--1977139 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
1977090 ATTTTTTTAA
1977100 AAAAAGTTATTAAAT-TTTC
1 AAAAAGTTA--AAATATTTC
1977119 AAAAAGTTAAAATATTTC
1 AAAAAGTTAAAATATTTC
1977137 AAA
1 AAA
1977140 CTAATATATT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 4 0.20
18 7 0.35
19 9 0.45
ACGTcount: A:0.55, C:0.05, G:0.05, T:0.35
Consensus pattern (18 bp):
AAAAAGTTAAAATATTTC
Found at i:1985878 original size:14 final size:15
Alignment explanation
Indices: 1985853--1985881 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
1985843 CTAAAATGCC
1985853 TATTTTTCTTTCTCT
1 TATTTTTCTTTCTCT
1985868 TATTTTT-TTTCTCT
1 TATTTTTCTTTCTCT
1985882 CAAACAATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.07, C:0.17, G:0.00, T:0.76
Consensus pattern (15 bp):
TATTTTTCTTTCTCT
Found at i:1993689 original size:2 final size:2
Alignment explanation
Indices: 1993673--1993706 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
1993663 AACTAAACAC
*
1993673 TA TA -A TA TT TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1993707 NNNNNNNNNN
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:2030409 original size:12 final size:12
Alignment explanation
Indices: 2030388--2030417 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
2030378 TATGGATAGC
2030388 AAGCAATATTAT
1 AAGCAATATTAT
*
2030400 AAGCACTATTAT
1 AAGCAATATTAT
2030412 AAGCAA
1 AAGCAA
2030418 ACTCTGCTTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.50, C:0.13, G:0.10, T:0.27
Consensus pattern (12 bp):
AAGCAATATTAT
Found at i:2033289 original size:12 final size:12
Alignment explanation
Indices: 2033272--2033297 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
2033262 AAGCAAAGTT
2033272 TGCTTATAATAG
1 TGCTTATAATAG
2033284 TGCTTATAATAG
1 TGCTTATAATAG
2033296 TG
1 TG
2033298 TNNNNNNNNN
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.42
Consensus pattern (12 bp):
TGCTTATAATAG
Found at i:2034543 original size:13 final size:12
Alignment explanation
Indices: 2034525--2034564 Score: 55
Period size: 11 Copynumber: 3.3 Consensus size: 12
2034515 TCTCATTAAC
2034525 TTTTTTATTTTA
1 TTTTTTATTTTA
*
2034537 GTTTTT-TTTTA
1 TTTTTTATTTTA
2034548 TTTTTTATATTTA
1 TTTTTTAT-TTTA
2034561 TTTT
1 TTTT
2034565 AACTTTATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
11 10 0.42
12 6 0.25
13 8 0.33
ACGTcount: A:0.15, C:0.00, G:0.03, T:0.82
Consensus pattern (12 bp):
TTTTTTATTTTA
Found at i:2041581 original size:22 final size:22
Alignment explanation
Indices: 2041555--2041596 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
2041545 NCAAACAAAA
2041555 ATTAAA-ATTATTAATTAAAGAG
1 ATTAAAGA-TATTAATTAAAGAG
2041577 ATTAAAGATATTAATTAAAG
1 ATTAAAGATATTAATTAAAG
2041597 GGAAAGAACT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
22 18 0.95
23 1 0.05
ACGTcount: A:0.55, C:0.00, G:0.10, T:0.36
Consensus pattern (22 bp):
ATTAAAGATATTAATTAAAGAG
Found at i:2060057 original size:80 final size:80
Alignment explanation
Indices: 2059972--2060164 Score: 217
Period size: 82 Copynumber: 2.4 Consensus size: 80
2059962 TACAAAAACA
* * * *
2059972 TGTTACATGTCATATTAAAAAAAATATTGTTGTTACACGCCATGTACCAAATTATATTATAC-AT
1 TGTTACATGTCATATTAAAAAAAATATTGTTGTTACACGCCATGTACAAAAATATATTACACGCT
2060036 CATGGTTAAAAAAAGT
66 -ATGGTTAAAAAAAGT
* * * * * *
2060052 TGTTACATGTCATGTTGAAAAAAAAATACTATTGTTACACGTCATGTATAAAAATATGTTACACG
1 TGTTACATGTCATATT--AAAAAAAATATTGTTGTTACACGCCATGTACAAAAATATATTACACG
*
2060117 CTATGGTTAAAAAAGGT
64 CTATGGTTAAAAAAAGT
** * *
2060134 TGTTACACATCATATTCAAAAATATATTGTT
1 TGTTACATGTCATATTAAAAAAAATATTGTT
2060165 ACACTTTAAT
Statistics
Matches: 92, Mismatches: 18, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
80 26 0.28
82 65 0.71
83 1 0.01
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.35
Consensus pattern (80 bp):
TGTTACATGTCATATTAAAAAAAATATTGTTGTTACACGCCATGTACAAAAATATATTACACGCT
ATGGTTAAAAAAAGT
Found at i:2062973 original size:23 final size:23
Alignment explanation
Indices: 2062947--2063115 Score: 122
Period size: 23 Copynumber: 7.6 Consensus size: 23
2062937 ACAATGCCTA
* *
2062947 AGTCACACACTGCCTTACTAACT
1 AGTCACGCAATGCCTTACTAACT
2062970 AGTCACGCAATGCCTTACTAACT
1 AGTCACGCAATGCCTTACTAACT
* *
2062993 AGTCACGCAATGGCTTACTAACA
1 AGTCACGCAATGCCTTACTAACT
* * * *
2063016 AATCACGCAAT-ACATACCAACT
1 AGTCACGCAATGCCTTACTAACT
* * *
2063038 AGTCAC-CAATACC-TA-AAAAT
1 AGTCACGCAATGCCTTACTAACT
*
2063058 AAGTCACGCAATGTCC--A--AAGT
1 -AGTCACGCAATG-CCTTACTAACT
**
2063079 CAGTCACGCAATG-CTTAAAAACT
1 -AGTCACGCAATGCCTTACTAACT
2063102 AGTCACGCAATGCC
1 AGTCACGCAATGCC
2063116 CAAAAACCAC
Statistics
Matches: 120, Mismatches: 17, Indels: 18
0.77 0.11 0.12
Matches are distributed among these distances:
19 1 0.01
20 3 0.03
21 28 0.23
22 30 0.25
23 58 0.48
ACGTcount: A:0.37, C:0.29, G:0.12, T:0.21
Consensus pattern (23 bp):
AGTCACGCAATGCCTTACTAACT
Found at i:2063098 original size:43 final size:42
Alignment explanation
Indices: 2063038--2063119 Score: 112
Period size: 43 Copynumber: 1.9 Consensus size: 42
2063028 CATACCAACT
*
2063038 AGTCACCAATACCTAAAAA-TAAGTCACGCAATGTCCAAAGTC
1 AGTCACCAATACCTAAAAACT-AGTCACGCAATGCCCAAAGTC
* *
2063080 AGTCACGCAATGCTTAAAAACTAGTCACGCAATGCCCAAA
1 AGTCAC-CAATACCTAAAAACTAGTCACGCAATGCCCAAA
2063120 AACCACTAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
42 6 0.17
43 28 0.80
44 1 0.03
ACGTcount: A:0.41, C:0.27, G:0.13, T:0.18
Consensus pattern (42 bp):
AGTCACCAATACCTAAAAACTAGTCACGCAATGCCCAAAGTC
Found at i:2063120 original size:22 final size:22
Alignment explanation
Indices: 2063034--2063122 Score: 85
Period size: 22 Copynumber: 4.1 Consensus size: 22
2063024 AATACATACC
* *
2063034 AACTAGTCAC-CAATACCTAAA
1 AACTAGTCACGCAATGCCCAAA
*
2063055 AA-TAAGTCACGCAATGTCCAAA
1 AACT-AGTCACGCAATGCCCAAA
** **
2063077 GTC-AGTCACGCAATGCTTAAA
1 AACTAGTCACGCAATGCCCAAA
2063098 AACTAGTCACGCAATGCCCAAA
1 AACTAGTCACGCAATGCCCAAA
2063120 AAC
1 AAC
2063123 CACTAAAATT
Statistics
Matches: 52, Mismatches: 12, Indels: 7
0.73 0.17 0.10
Matches are distributed among these distances:
20 1 0.02
21 24 0.46
22 27 0.52
ACGTcount: A:0.43, C:0.27, G:0.12, T:0.18
Consensus pattern (22 bp):
AACTAGTCACGCAATGCCCAAA
Found at i:2084654 original size:46 final size:47
Alignment explanation
Indices: 2084572--2084683 Score: 122
Period size: 46 Copynumber: 2.4 Consensus size: 47
2084562 ACAAACATAT
* ** * *
2084572 TTTTATTATAATTTAATAATATTTTGTATGAGAAGAT-AATTAAAGC
1 TTTTATTATAATTAAATAATATTTAATATGAAAAGATAAAATAAAGC
* *
2084618 TTTTATTATAATTAAATAATATTTAATACT-AAAAGATAAAATATATC
1 TTTTATTATAATTAAATAATATTTAATA-TGAAAAGATAAAATAAAGC
2084665 TTTTATTA-AATTTAAATAA
1 TTTTATTATAA-TTAAATAA
2084684 AAATAAATAA
Statistics
Matches: 56, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
46 33 0.59
47 23 0.41
ACGTcount: A:0.46, C:0.03, G:0.05, T:0.46
Consensus pattern (47 bp):
TTTTATTATAATTAAATAATATTTAATATGAAAAGATAAAATAAAGC
Found at i:2084737 original size:45 final size:43
Alignment explanation
Indices: 2084678--2084784 Score: 130
Period size: 45 Copynumber: 2.5 Consensus size: 43
2084668 TATTAAATTT
* *
2084678 AAATAA-AA-ATAAATAATATTCTTTATTACATATATTATAGTC
1 AAATAATAATATAAATAATATTCGTTATAACATATATTATAG-C
* *
2084720 AAATAATAATATTAAATAATATTCGTTATAATATTTATTATAGC
1 AAATAATAATA-TAAATAATATTCGTTATAACATATATTATAGC
*
2084764 TAATAATAATATAAAT-ATATT
1 AAATAATAATATAAATAATATT
2084785 AAATGATATT
Statistics
Matches: 57, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
42 11 0.19
43 7 0.12
44 12 0.21
45 27 0.47
ACGTcount: A:0.50, C:0.05, G:0.03, T:0.42
Consensus pattern (43 bp):
AAATAATAATATAAATAATATTCGTTATAACATATATTATAGC
Found at i:2088615 original size:25 final size:25
Alignment explanation
Indices: 2088581--2088629 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
2088571 ATTATCTGAG
2088581 TTAAATTAGCAGCATGATGAATATT
1 TTAAATTAGCAGCATGATGAATATT
2088606 TTAAATTAGCAGCATGATGAATAT
1 TTAAATTAGCAGCATGATGAATAT
2088630 CAACTGCAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.41, C:0.08, G:0.16, T:0.35
Consensus pattern (25 bp):
TTAAATTAGCAGCATGATGAATATT
Found at i:2095859 original size:31 final size:29
Alignment explanation
Indices: 2095824--2095894 Score: 72
Period size: 31 Copynumber: 2.3 Consensus size: 29
2095814 ATAAAAACTA
*
2095824 ATAAATAATAACTAAATTAAGATAAATAAAC
1 ATAAATAA-AA-TAAATTAAGAAAAATAAAC
* *
2095855 ATAAAATTAAAATAATTTAATAAAAATAAAC
1 AT-AAA-TAAAATAAATTAAGAAAAATAAAC
2095886 -TAAATAAAA
1 ATAAATAAAA
2095895 AATAACTAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
28 5 0.14
29 3 0.09
30 1 0.03
31 18 0.51
32 5 0.14
33 3 0.09
ACGTcount: A:0.68, C:0.04, G:0.01, T:0.27
Consensus pattern (29 bp):
ATAAATAAAATAAATTAAGAAAAATAAAC
Found at i:2095893 original size:15 final size:15
Alignment explanation
Indices: 2095819--2095904 Score: 52
Period size: 15 Copynumber: 5.5 Consensus size: 15
2095809 AACACATAAA
*
2095819 AACT-AATAAATAAT
1 AACTAAATAAAAAAT
2095833 AACTAAATTAAGATAAAT
1 AACTAAA-TAA-A-AAAT
*
2095851 AAACATAAA-ATTAAAAT
1 -AAC-TAAATA-AAAAAT
* *
2095868 AATTTAAT-AAAAAT
1 AACTAAATAAAAAAT
2095882 AAACTAAATAAAAAAT
1 -AACTAAATAAAAAAT
2095898 AACTAAA
1 AACTAAA
2095905 AATAATTAAA
Statistics
Matches: 55, Mismatches: 7, Indels: 19
0.68 0.09 0.23
Matches are distributed among these distances:
14 9 0.16
15 18 0.33
16 11 0.20
17 5 0.09
18 5 0.09
19 3 0.05
20 4 0.07
ACGTcount: A:0.67, C:0.06, G:0.01, T:0.26
Consensus pattern (15 bp):
AACTAAATAAAAAAT
Found at i:2098657 original size:16 final size:16
Alignment explanation
Indices: 2098638--2098669 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
2098628 CTTTAAACTA
*
2098638 TTTGTTTTTTAAAAAT
1 TTTGTTCTTTAAAAAT
2098654 TTTGTTCTTTAAAAAT
1 TTTGTTCTTTAAAAAT
2098670 AAGTTCTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.31, C:0.03, G:0.06, T:0.59
Consensus pattern (16 bp):
TTTGTTCTTTAAAAAT
Found at i:2102125 original size:23 final size:23
Alignment explanation
Indices: 2102099--2102174 Score: 125
Period size: 23 Copynumber: 3.3 Consensus size: 23
2102089 ACGACTTAAT
***
2102099 CTTGATCACGAACTTCGTTGTCG
1 CTTGATCACGAACTTCACCGTCG
2102122 CTTGATCACGAACTTCACCGTCG
1 CTTGATCACGAACTTCACCGTCG
2102145 CTTGATCACGAACTTCACCGTCG
1 CTTGATCACGAACTTCACCGTCG
2102168 CTTGATC
1 CTTGATC
2102175 TTCACTTCAT
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 50 1.00
ACGTcount: A:0.20, C:0.32, G:0.18, T:0.30
Consensus pattern (23 bp):
CTTGATCACGAACTTCACCGTCG
Found at i:2102656 original size:81 final size:80
Alignment explanation
Indices: 2102571--2102757 Score: 268
Period size: 81 Copynumber: 2.3 Consensus size: 80
2102561 TGATTCATAA
* * *
2102571 AAAATATGAAGATTATCTCCAAATTATTTTGATTTATTTAGAGATAAATTGAATGACCAATAACT
1 AAAATATAAATATTATCTCCAAATTATTTTGATTTATTTAGAGATAAATTGAATGACCAAGAACT
2102636 AATTTTTTGATTGGTC
66 AA-TTTTTGATTGGTC
* * * *
2102652 AAAATATAAATATTATCTCTAAATCATTTTGATTTATTTGGAGATAAATTGGATGACCAAGAACT
1 AAAATATAAATATTATCTCCAAATTATTTTGATTTATTTAGAGATAAATTGAATGACCAAGAACT
2102717 AATTTTTGATTGGTC
66 AATTTTTGATTGGTC
* * *
2102732 -CAATTTAAATATTATCTTCAAATTAT
1 AAAATATAAATATTATCTCCAAATTAT
2102758 CTCAAGAAAT
Statistics
Matches: 94, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
79 21 0.22
80 13 0.14
81 60 0.64
ACGTcount: A:0.39, C:0.09, G:0.11, T:0.41
Consensus pattern (80 bp):
AAAATATAAATATTATCTCCAAATTATTTTGATTTATTTAGAGATAAATTGAATGACCAAGAACT
AATTTTTGATTGGTC
Found at i:2103366 original size:26 final size:26
Alignment explanation
Indices: 2103337--2103450 Score: 85
Period size: 26 Copynumber: 4.4 Consensus size: 26
2103327 GTATAACAAC
*
2103337 AATATTTTTTTTTCAA-CATAACGTGT
1 AATATATTTTTTT-AATCATAACGTGT
2103363 AATA-ACTTTTTTTAATCATAACGTGT
1 AATATA-TTTTTTTAATCATAACGTGT
* * *
2103389 AACATATTTTTGT-AT-ATGACGTGT
1 AATATATTTTTTTAATCATAACGTGT
* **
2103413 AACAATAATTTTTTTAA-CATGGCGTGT
1 AA-TAT-ATTTTTTTAATCATAACGTGT
*
2103440 GATATATTTTT
1 AATATATTTTT
2103451 ATACATAGCG
Statistics
Matches: 72, Mismatches: 9, Indels: 15
0.75 0.09 0.16
Matches are distributed among these distances:
24 10 0.14
25 12 0.17
26 39 0.54
27 11 0.15
ACGTcount: A:0.32, C:0.10, G:0.11, T:0.47
Consensus pattern (26 bp):
AATATATTTTTTTAATCATAACGTGT
Found at i:2103439 original size:51 final size:53
Alignment explanation
Indices: 2103363--2103468 Score: 128
Period size: 51 Copynumber: 2.0 Consensus size: 53
2103353 CATAACGTGT
* *
2103363 AATAACTTTTTTTAATCATAACGTGTAACATATTTTTGTATAT-GACGTGTAAC
1 AATAACTTTTTTTAATCATAACGTGTAACATATTTTTATACATAG-CGTGTAAC
** * *
2103416 AATAA-TTTTTTTAA-CATGGCGTGTGATATATTTTTATACATAGCGTGTAAC
1 AATAACTTTTTTTAATCATAACGTGTAACATATTTTTATACATAGCGTGTAAC
2103467 AA
1 AA
2103469 CCTAACCATG
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
51 31 0.67
52 10 0.22
53 5 0.11
ACGTcount: A:0.34, C:0.10, G:0.13, T:0.42
Consensus pattern (53 bp):
AATAACTTTTTTTAATCATAACGTGTAACATATTTTTATACATAGCGTGTAAC
Found at i:2103583 original size:22 final size:22
Alignment explanation
Indices: 2103557--2103606 Score: 64
Period size: 24 Copynumber: 2.2 Consensus size: 22
2103547 TAACCTTGAC
2103557 GTGTAACATGCTTTTATACATG
1 GTGTAACATGCTTTTATACATG
* *
2103579 GTGTATAATATGTTTTTATACATG
1 GTG--TAACATGCTTTTATACATG
2103603 GTGT
1 GTGT
2103607 GCAACATCAT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
22 4 0.17
24 20 0.83
ACGTcount: A:0.26, C:0.08, G:0.20, T:0.46
Consensus pattern (22 bp):
GTGTAACATGCTTTTATACATG
Found at i:2111824 original size:15 final size:15
Alignment explanation
Indices: 2111804--2111863 Score: 61
Period size: 15 Copynumber: 3.8 Consensus size: 15
2111794 TACTGTTATA
2111804 ATTAAAATAAAAAAT
1 ATTAAAATAAAAAAT
2111819 ATTAAAATAAAATATAT
1 ATTAAAATAAAA-A-AT
2111836 AATATAAGAAT-AAAAA-
1 -AT-TAA-AATAAAAAAT
2111852 ATTAAAATAAAA
1 ATTAAAATAAAA
2111864 TAAAATATGA
Statistics
Matches: 39, Mismatches: 0, Indels: 13
0.75 0.00 0.25
Matches are distributed among these distances:
13 3 0.08
14 6 0.15
15 14 0.36
16 1 0.03
17 3 0.08
18 3 0.08
19 6 0.15
20 3 0.08
ACGTcount: A:0.72, C:0.00, G:0.02, T:0.27
Consensus pattern (15 bp):
ATTAAAATAAAAAAT
Found at i:2111831 original size:20 final size:18
Alignment explanation
Indices: 2111806--2111884 Score: 52
Period size: 20 Copynumber: 4.1 Consensus size: 18
2111796 CTGTTATAAT
2111806 TAAAATAAAAAATATTAAAA
1 TAAAATAAAAAA-A-TAAAA
* *
2111826 TAAAATATATAATATAAGAA
1 TAAAATA-AAAAAATAA-AA
*
2111846 TAAAA-AATTAAAATAAAA
1 TAAAATAA-AAAAATAAAA
*
2111864 TAAAATATGAAAAATTAAAA
1 TAAAATA--AAAAAATAAAA
2111884 T
1 T
2111885 TTATATAATA
Statistics
Matches: 48, Mismatches: 5, Indels: 12
0.74 0.08 0.18
Matches are distributed among these distances:
18 8 0.17
19 12 0.25
20 24 0.50
21 4 0.08
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.27
Consensus pattern (18 bp):
TAAAATAAAAAAATAAAA
Found at i:2111838 original size:33 final size:33
Alignment explanation
Indices: 2111800--2111930 Score: 101
Period size: 33 Copynumber: 4.3 Consensus size: 33
2111790 TTTATACTGT
2111800 TATAAT-TAA-AATAAAAAATATTAAAATAAAATA
1 TATAATATAAGAAT-AAAAA-ATTAAAATAAAATA
2111833 TATAATATAAGAATAAAAAATTAAAATAAAATA
1 TATAATATAAGAATAAAAAATTAAAATAAAATA
*
2111866 -A-AATAT--G----AAAAATTAAAAT---TTA
1 TATAATATAAGAATAAAAAATTAAAATAAAATA
* *
2111888 TATAATATAGGTAA-AACAAATTAAAATAAAATA
1 TATAATATAAG-AATAAAAAATTAAAATAAAATA
*
2111921 TATACTATAA
1 TATAATATAA
2111931 AAAATATATT
Statistics
Matches: 80, Mismatches: 5, Indels: 26
0.72 0.05 0.23
Matches are distributed among these distances:
22 2 0.03
23 1 0.01
24 5 0.06
25 12 0.15
26 1 0.01
29 1 0.01
30 11 0.14
31 5 0.06
32 1 0.01
33 30 0.38
34 8 0.10
35 3 0.04
ACGTcount: A:0.66, C:0.02, G:0.03, T:0.30
Consensus pattern (33 bp):
TATAATATAAGAATAAAAAATTAAAATAAAATA
Found at i:2111865 original size:26 final size:28
Alignment explanation
Indices: 2111822--2111922 Score: 83
Period size: 25 Copynumber: 3.8 Consensus size: 28
2111812 AAAAAATATT
2111822 AAAA-TAAAATATATAATATAAGAATAA
1 AAAATTAAAATATATAATATAAGAATAA
*
2111849 AAAATTAAAATA-A-AATA-AA-ATATGA
1 AAAATTAAAATATATAATATAAGA-ATAA
*
2111874 AAAATTAAAATTTATATAATATAGGTAA-AA
1 AAAATTAAAA--TATATAATATAAG-AATAA
*
2111904 CAAATTAAAATA-A-AATATA
1 AAAATTAAAATATATAATATA
2111923 TACTATAAAA
Statistics
Matches: 61, Mismatches: 4, Indels: 19
0.73 0.05 0.23
Matches are distributed among these distances:
24 1 0.02
25 15 0.25
26 10 0.16
27 8 0.13
28 10 0.16
29 4 0.07
30 11 0.18
31 1 0.02
32 1 0.02
ACGTcount: A:0.67, C:0.01, G:0.04, T:0.28
Consensus pattern (28 bp):
AAAATTAAAATATATAATATAAGAATAA
Found at i:2112232 original size:15 final size:15
Alignment explanation
Indices: 2112212--2112242 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
2112202 TGTTATTTTC
2112212 CTTGCAATCACATTA
1 CTTGCAATCACATTA
*
2112227 CTTGCAATCATATTA
1 CTTGCAATCACATTA
2112242 C
1 C
2112243 CTGTAATTAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.35
Consensus pattern (15 bp):
CTTGCAATCACATTA
Found at i:2112883 original size:2 final size:2
Alignment explanation
Indices: 2112878--2112911 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
2112868 AGTTTTTTCA
2112878 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2112912 TTGTATAATT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2120943 original size:19 final size:18
Alignment explanation
Indices: 2120916--2120956 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
2120906 TGAATGAAAA
*
2120916 TTTTCGAATAATGTTTGAG
1 TTTTAGAAT-ATGTTTGAG
*
2120935 TTTTAGAATTTGTTTGAG
1 TTTTAGAATATGTTTGAG
2120953 TTTT
1 TTTT
2120957 TCTCGAGGCA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 12 0.60
19 8 0.40
ACGTcount: A:0.22, C:0.02, G:0.20, T:0.56
Consensus pattern (18 bp):
TTTTAGAATATGTTTGAG
Found at i:2123090 original size:33 final size:33
Alignment explanation
Indices: 2123047--2123117 Score: 101
Period size: 33 Copynumber: 2.2 Consensus size: 33
2123037 TTAAAATAAA
*
2123047 AAAATATTAAAATAAAATATATAATATAAG-AATC
1 AAAATATTAAAATAAAAT-GA-AATATAAGAAATC
2123081 AAAA-ATTAAAATAAAATGAAATATAAGAAATC
1 AAAATATTAAAATAAAATGAAATATAAGAAATC
2123113 AAAAT
1 AAAAT
2123118 TTATACAATA
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
31 8 0.24
32 9 0.26
33 13 0.38
34 4 0.12
ACGTcount: A:0.68, C:0.03, G:0.04, T:0.25
Consensus pattern (33 bp):
AAAATATTAAAATAAAATGAAATATAAGAAATC
Found at i:2123129 original size:55 final size:50
Alignment explanation
Indices: 2123035--2123153 Score: 127
Period size: 55 Copynumber: 2.3 Consensus size: 50
2123025 ATATTATTAT
* *
2123035 AATTAAAATAAAA-AAATATTAAAATAAAATATATAATATAAG-AATCAA-A
1 AATTAAAATAAAATAAATATAAAAATAAAATATACAATATAAGTAA--AATA
*
2123084 AATTAAAATAAAATGAAATATAAGAAATCAAAATTTATACAATATAGGTAAAATA
1 AATTAAAATAAAAT-AAATATAA-AAAT-AAAA--TATACAATATAAGTAAAATA
2123139 AATTAAAATAAAATA
1 AATTAAAATAAAATA
2123154 TATCATATAA
Statistics
Matches: 59, Mismatches: 3, Indels: 11
0.81 0.04 0.15
Matches are distributed among these distances:
49 13 0.22
51 7 0.12
52 4 0.07
53 4 0.07
54 3 0.05
55 26 0.44
56 2 0.03
ACGTcount: A:0.66, C:0.03, G:0.04, T:0.27
Consensus pattern (50 bp):
AATTAAAATAAAATAAATATAAAAATAAAATATACAATATAAGTAAAATA
Found at i:2123226 original size:33 final size:34
Alignment explanation
Indices: 2123144--2123227 Score: 98
Period size: 34 Copynumber: 2.5 Consensus size: 34
2123134 AAATAAATTA
** *
2123144 AAATAAAATATATCATATAAAAAATTATATTAAAG
1 AAATAAAA-ATAAAATATAAAAAATTATAATAAAG
* *
2123179 AAATAAAAATAAAATATATAAAATTATAAT-AAT
1 AAATAAAAATAAAATATAAAAAATTATAATAAAG
*
2123212 AAATGAAAATAAAATA
1 AAATAAAAATAAAATA
2123228 CATGACATTA
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
33 17 0.40
34 18 0.42
35 8 0.19
ACGTcount: A:0.68, C:0.01, G:0.02, T:0.29
Consensus pattern (34 bp):
AAATAAAAATAAAATATAAAAAATTATAATAAAG
Found at i:2123464 original size:15 final size:15
Alignment explanation
Indices: 2123444--2123519 Score: 80
Period size: 15 Copynumber: 5.1 Consensus size: 15
2123434 TGTTATTTTT
*
2123444 CTTACAATCACATTG
1 CTTACAATCACATTA
*
2123459 CTTACAATCACATTG
1 CTTACAATCACATTA
* *
2123474 CTTGCAATTACATTA
1 CTTACAATCACATTA
**
2123489 CTTGTAATCACATTA
1 CTTACAATCACATTA
* *
2123504 CCTATAATCACATTA
1 CTTACAATCACATTA
2123519 C
1 C
2123520 ATTGTAAAGT
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 54 1.00
ACGTcount: A:0.34, C:0.25, G:0.05, T:0.36
Consensus pattern (15 bp):
CTTACAATCACATTA
Found at i:2125745 original size:2 final size:2
Alignment explanation
Indices: 2125738--2125765 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
2125728 GAGAAATTAC
2125738 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2125766 GTATGTATGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2129306 original size:21 final size:20
Alignment explanation
Indices: 2129277--2129315 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
2129267 TTCTGGTAAT
*
2129277 AAACTCTTAGTTGATTAACA
1 AAACTCTTAATTGATTAACA
2129297 AAACTTCTTAATTGATTAA
1 AAAC-TCTTAATTGATTAA
2129316 GTCATTTCTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.41, C:0.13, G:0.08, T:0.38
Consensus pattern (20 bp):
AAACTCTTAATTGATTAACA
Found at i:2137754 original size:13 final size:13
Alignment explanation
Indices: 2137717--2137754 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
2137707 GTTTATTTTT
*
2137717 GAAAATCACTTAA
1 GAAAATCACTTGA
*
2137730 AAAAATCACTTGA
1 GAAAATCACTTGA
2137743 GAAAATCACTTG
1 GAAAATCACTTG
2137755 CTTTGGTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.50, C:0.16, G:0.11, T:0.24
Consensus pattern (13 bp):
GAAAATCACTTGA
Found at i:2148606 original size:31 final size:31
Alignment explanation
Indices: 2148569--2148658 Score: 99
Period size: 31 Copynumber: 2.9 Consensus size: 31
2148559 ATATTGGTGA
* * * *
2148569 AATTTTAATCAACAATCAATGATACAATGTT
1 AATTTTAAGCAACAACCAATAATACAATGCT
*
2148600 AATTTTAAGCAACAACCAATAATGCAATGCT
1 AATTTTAAGCAACAACCAATAATACAATGCT
* * * *
2148631 AATTTTAAGCGATAATCAATAATGCAAT
1 AATTTTAAGCAACAACCAATAATACAAT
2148659 ACTACAATGC
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 51 1.00
ACGTcount: A:0.46, C:0.14, G:0.09, T:0.31
Consensus pattern (31 bp):
AATTTTAAGCAACAACCAATAATACAATGCT
Found at i:2149759 original size:15 final size:15
Alignment explanation
Indices: 2149739--2149769 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
2149729 TAATCAAGAT
*
2149739 TATTAATTTATCGAA
1 TATTAATTTATAGAA
2149754 TATTAATTTATAGAA
1 TATTAATTTATAGAA
2149769 T
1 T
2149770 TTATTATTAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.42, C:0.03, G:0.06, T:0.48
Consensus pattern (15 bp):
TATTAATTTATAGAA
Found at i:2157701 original size:12 final size:12
Alignment explanation
Indices: 2157686--2157724 Score: 53
Period size: 11 Copynumber: 3.2 Consensus size: 12
2157676 ATTTTTACTA
2157686 CAATTTTCTTTC
1 CAATTTTCTTTC
2157698 CAATTTTC-TTC
1 CAATTTTCTTTC
*
2157709 CAAATTTCTATTC
1 CAATTTTCT-TTC
2157722 CAA
1 CAA
2157725 CTCAACAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
11 10 0.42
12 8 0.33
13 6 0.25
ACGTcount: A:0.26, C:0.26, G:0.00, T:0.49
Consensus pattern (12 bp):
CAATTTTCTTTC
Found at i:2165107 original size:2 final size:2
Alignment explanation
Indices: 2165100--2165124 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
2165090 GTACTGAATT
2165100 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
2165125 GTTCAGGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:2166868 original size:18 final size:18
Alignment explanation
Indices: 2166844--2166884 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
2166834 AATTTAAGAA
*
2166844 CATTTCTTTTTGACTTTT
1 CATTTCTCTTTGACTTTT
* *
2166862 GATTTCTCTTTGCCTTTT
1 CATTTCTCTTTGACTTTT
2166880 CATTT
1 CATTT
2166885 TCAATATATT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.10, C:0.20, G:0.07, T:0.63
Consensus pattern (18 bp):
CATTTCTCTTTGACTTTT
Found at i:2167029 original size:2 final size:2
Alignment explanation
Indices: 2167017--2167058 Score: 68
Period size: 2 Copynumber: 21.5 Consensus size: 2
2167007 GGTGTAAACA
*
2167017 AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2167058 A
1 A
2167059 AGGTACAATG
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 36 0.97
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2168405 original size:13 final size:13
Alignment explanation
Indices: 2168370--2168397 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
2168360 ATGTTGATAT
2168370 GACATAATGACAC
1 GACATAATGACAC
2168383 GACATAATGACAC
1 GACATAATGACAC
2168396 GA
1 GA
2168398 TTATATGAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.46, C:0.21, G:0.18, T:0.14
Consensus pattern (13 bp):
GACATAATGACAC
Found at i:2169499 original size:18 final size:18
Alignment explanation
Indices: 2169457--2169501 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
2169447 ACTCCACCCC
2169457 TTTAAT-TTTTTATTAGTT
1 TTTAATATTTTTATTA-TT
2169475 TTT-ATATTTTTATT-TT
1 TTTAATATTTTTATTATT
2169491 GTTTAATATTT
1 -TTTAATATTT
2169502 AGGTTATATT
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
16 2 0.08
17 5 0.21
18 17 0.71
ACGTcount: A:0.22, C:0.00, G:0.04, T:0.73
Consensus pattern (18 bp):
TTTAATATTTTTATTATT
Done.