Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018399359.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2626.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 9340
ACGTcount: A:0.27, C:0.10, G:0.10, T:0.27
Warning! 2397 characters in sequence are not A, C, G, or T
Found at i:1202 original size:171 final size:170
Alignment explanation
Indices: 578--1963 Score: 648
Period size: 170 Copynumber: 8.1 Consensus size: 170
568 NNNNNNNNNN
* * *
578 TGAGATTGTAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCT-T-GAGTGACCATAAAT-
1 TGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAA-GCTATAG-GTGACTACAAATG
* * *
640 AGGCTTTTCTTGCCAAT-AA-AGTGCTTTTTCTTCATGTTTCCT-TAGGCAGACATTC-AACTGT
64 A-ACTTTTCTTGCCAATGAATA-T-CTTTTTCTTCA-G-TTCCTCTAGGTAGACATTCAAAC-AT
* * *
701 AATCTGTTTTAACCAAAA-ATAAAAAAACATTCAACTTACAGTCAATTA
123 AATCTGTTTTAACCAAAATATGAAAAAA-ATTCAACTTAAAGTCAAGTA
* * ********** *
749 TGAG-CTATAAAACCATTTAAAGCGGGTAATAAGGCTTTTGAAGAC-ATAGGTNNNNNNNNNNGG
1 TGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAG-CTATAGGTGACTACAAATGA
* * **
812 ACTTTTCTTGCCAATGAATATCTTTTAT-TTCTTGTT-TTCTAAGGTAGACATTCAATTATAATC
65 ACTTTTCTTGCCAATGAATATCTTTT-TCTTC-AGTTCCTCT-AGGTAGACATTCAAACATAATC
********* *
875 TGTTTTANNNNNNNNNNT--AAAAAATTCAACTTTAAA-TCAATTA
127 TGTTTTA-ACCAAAATATGAAAAAAATTCAAC-TTAAAGTCAAGTA
* * * * * **
918 TGAGATTATAAAGCCATTTAAAGTGAGTAACAA-GCTTTCCGAAGGCT-T-GTGTGATTGTAAAT
1 TGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTT-TGAA-GCTATAG-GTGACTACAAAT
* * * ** * *
980 -AGGCTTTACTTGCCAATAAATGGCTTTTTCTTTAGGTTTCCT-TATGTAGACATTCAAACATAA
63 GA-ACTTTTCTTGCCAATGAATATCTTTTTCTTCA-G-TTCCTCTAGGTAGACATTCAAACATAA
* *
1043 TTTGTTTTAACCAAATATAT-AAAAAAATTCAACCTAAAGTCCAA-TA
125 TCTGTTTTAACCAAA-ATATGAAAAAAATTCAACTTAAAGT-CAAGTA
* * * * *
1089 TGAGATTATGAAACCATTTAAAGCGAGTAATAAGGCTTTTGAGGGTATAGGTGGCTATAAATGAA
1 TGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGCTATAGGTGACTACAAATGAA
* * * ** *
1154 CTTTTCTTCCCAATGAATCA-CTTTTTCTTCATGTTCCTCAAGGTAGACATTTAATTATAGTCTG
66 CTTTTCTTGCCAATGAAT-ATCTTTTTCTTCA-GTTCCTCTAGGTAGACATTCAAACATAATCTG
* *
1218 TTTTAACCAAAAT-TGAAAACAAAATTCAACTTAAAGTCAATTN
129 TTTTAACCAAAATATG-AAA-AAAATTCAACTTAAAGTCAAGTA
********* ** * * * * *
1261 NNNNNNNNNAAAACCATTTAAAATGAGTAATATGGCTTTTAAATG-TACAAGTGACTACAAATGG
1 TGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAA-GCTATAGGTGACTACAAATGA
* * * ** * *
1325 ACTTTTCTTGCCAATGAATATCTTTTTCTTCACATTTCTCTAGGTAGACATCCAATTACAATTTG
65 ACTTTTCTTGCCAATGAATATCTTTTTCTTCA-GTTCCTCTAGGTAGACATTCAAACATAATCTG
* * * *
1390 TTTTAA-GAAAAAATGTAAAAAAACTCAACTTCAAA-TCAATTA
129 TTTTAACCAAAATATG-AAAAAAATTCAACTT-AAAGTCAAGTA
* * *
1432 TG-GCATTATAAAACCATTTAAA-CGA-TGAATAAGGCTTTCGAAGACT-TGGGTGACTATAAAT
1 TGAG-ATTATAAAACCATTTAAAGCGAGT-AATAAGGCTTTTGAAG-CTATAGGTGACTACAAAT
* ** * * *
1493 -AAGCTTTTCTTGCTAATGAATGGCTTTTTCTTCGAGTTTCCT-TAGGCAAACATTC-AACTGTA
63 GAA-CTTTTCTTGCCAATGAATATCTTTTTCTTC-AG-TTCCTCTAGGTAGACATTCAAAC-ATA
* * *
1555 ATCTGCTTTAGCCAAAA-ATGAAAAACAATTCTACTTAAAGTCAAGTA
124 ATCTGTTTTAACCAAAATATGAAAAA-AATTCAACTTAAAGTCAAGTA
* ** * * * * *
1602 TGAGATTAGAAAAATATTTAAAGTGGGTAATAAGGCTTTTGAAGCCATGGGTGACTACAAATGGA
1 TGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGCTATAGGTGACTACAAATGAA
* * * * * * * * * ** *
1667 CTTTTCCTACCAATGAATATCTTTTTCTTCTCATTTCC-CAAGTTAAATAATGAATTATAATATG
66 CTTTTCTTGCCAATGAATATCTTTTTC-T-TCAGTTCCTCTAGGTAGACATTCAAACATAATCTG
* * * * * *
1731 TTTTAA-TAAAA-ATGTAAAAAAATTTAGCCTTGAA-TTAATTA
129 TTTTAACCAAAATATG-AAAAAAATTCA-ACTTAAAGTCAAGTA
* * * * * *
1772 TGAGATTATAAAACCTTTTAAAGTGGGTAATAAAGCTTCTGAAGGCT-TGGGTGACTACAAAT-A
1 TGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAA-GCTATAGGTGACTACAAATGA
* * * * * *
1835 GGCTTTTCTTTACCAATGAA-ATGGCTTTTTTCTTCATGTTTCCT-TTGGCAAACATTC-AACTG
65 -ACTTTTC-TTGCCAATGAATAT--C-TTTTTCTTCA-G-TTCCTCTAGGTAGACATTCAAAC-A
* * ** *
1897 TGACCTGTTTTAGTCAAAA-ATGTAAAAAAATTCAACTTAAAGTCAATTA
122 TAATCTGTTTTAACCAAAATATG-AAAAAAATTCAACTTAAAGTCAAGTA
*
1946 TGATATTATAAAACCATT
1 TGAGATTATAAAACCATT
1964 NNNNNNNNNN
Statistics
Matches: 907, Mismatches: 232, Indels: 149
0.70 0.18 0.12
Matches are distributed among these distances:
168 1 0.00
169 42 0.05
170 369 0.41
171 275 0.30
172 147 0.16
173 33 0.04
174 40 0.04
ACGTcount: A:0.35, C:0.14, G:0.14, T:0.34
Consensus pattern (170 bp):
TGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGCTATAGGTGACTACAAATGAA
CTTTTCTTGCCAATGAATATCTTTTTCTTCAGTTCCTCTAGGTAGACATTCAAACATAATCTGTT
TTAACCAAAATATGAAAAAAATTCAACTTAAAGTCAAGTA
Found at i:1574 original size:170 final size:169
Alignment explanation
Indices: 578--2458 Score: 757
Period size: 171 Copynumber: 11.0 Consensus size: 169
568 NNNNNNNNNN
* * * * * * *
578 TGAGATTGTAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCTTGAGTGACCATAAATAGG
1 TGAGATTATAAAACCATTTAAAGTG-GTAATAAGGCTTTCGAAGACTTGGGTGACTACAAATAGG
* * *
643 CTTTTCTTGCCAAT-AAAGTGCTTTTTCTTCATGTTTCCTTAGGCAGACATTCAACTGTAATCTG
65 CTTTTCTTACCAATGAATG-GCTTTTTCTTCA-GTTTCCTTAGGCAAACATTCAACTGTAATCTG
* *
707 TTTTA-ACCAAAAAT-AAAAAAACATTCAACTTACAGTCAATTA
128 TTTTAGA-CAAAAATGTAAAAAA-ATTCAACTTAAAGTCAATTA
* * * * * **********
749 TGAG-CTATAAAACCATTTAAAGCGGGTAATAAGGCTTTTGAAGACATAGGT-NNNNNNNNNNGG
1 TGAGATTATAAAACCATTTAAAG-TGGTAATAAGGCTTTCGAAGACTTGGGTGACTACAAATAGG
* ** * * * * * * *
812 ACTTTTCTTGCCAATGAATATCTTTTAT-TTCTTGTTTTCTAAGGTAGACATTCAATTATAATCT
65 -CTTTTCTTACCAATGAATGGCTTTT-TCTTC-AGTTTCCTTAGGCAAACATTCAACTGTAATCT
**********
876 GTTTTANNNNNNNNNNT-AAAAAATTCAACTTTAAA-TCAATTA
127 GTTTTAGACAAAAATGTAAAAAAATTCAAC-TTAAAGTCAATTA
* * * * * **
918 TGAGATTATAAAGCCATTTAAAGTGAGTAACAA-GCTTTCCGAAGGCTTGTGTGATTGTAAATAG
1 TGAGATTATAAAACCATTTAAAGTG-GTAATAAGGCTTT-CGAAGACTTGGGTGACTACAAATAG
* * * * * * * * *
982 GCTTTACTTGCCAATAAATGGCTTTTTCTTTAGGTTTCCTTATGTAGACATTCAAAC-ATAATTT
64 GCTTTTCTTACCAATGAATGGCTTTTTCTTCA-GTTTCCTTAGGCAAACATTC-AACTGTAATCT
* * *
1046 GTTTTA-ACCAAATATATAAAAAAATTCAACCTAAAGTCCAA-TA
127 GTTTTAGA-CAAAAATGTAAAAAAATTCAACTTAAAGT-CAATTA
* * * ** * * *
1089 TGAGATTATGAAACCATTTAAAGCGAGTAATAAGGCTTTTG-AGGGTATAGGTGGCTATAAAT-G
1 TGAGATTATAAAACCATTTAAAGTG-GTAATAAGGCTTTCGAAGACT-TGGGTGACTACAAATAG
* * ** * * * * * * *
1152 AACTTTTCTTCCCAATGAATCACTTTTTCTTCA-TGTTCCTCAAGGTAGACATTTAATTATAGTC
64 -GCTTTTCTTACCAATGAATGGCTTTTTCTTCAGT-TTCCT-TAGGCAAACATTCAACTGTAATC
* * *
1216 TGTTTTA-ACCAAAATTGAAAACAAAATTCAACTTAAAGTCAATTN
126 TGTTTTAGA-CAAAAATGTAAA-AAAATTCAACTTAAAGTCAATTA
********* * * ** **
1261 NNNNNNNNNAAAACCATTTAAAATGAGTAATATGGCTTTTAAATGTAC--AAGTGACTACAAAT-
1 TGAGATTATAAAACCATTTAAAGTG-GTAATAAGGCTTTCGAA-G-ACTTGGGTGACTACAAATA
* ** * * * * * **
1323 GGACTTTTCTTGCCAATGAATATCTTTTTCTTCACATTT-CTCTAGGTAGACATCCAATTACAAT
63 GG-CTTTTCTTACCAATGAATGGCTTTTTCTTCA-GTTTCCT-TAGGCAAACATTCAACTGTAAT
* *
1387 TTGTTTTAAGA-AAAAATGTAAAAAAACTCAACTTCAAA-TCAATTA
125 CTGTTTT-AGACAAAAATGTAAAAAAATTCAACTT-AAAGTCAATTA
*
1432 TG-GCATTATAAAACCATTTAAACGAT-G-AATAAGGCTTTCGAAGACTTGGGTGACTATAAATA
1 TGAG-ATTATAAAACCATTTAAA-G-TGGTAATAAGGCTTTCGAAGACTTGGGTGACTACAAATA
* * *
1494 AGCTTTTCTTGCTAATGAATGGCTTTTTCTTCGAGTTTCCTTAGGCAAACATTCAACTGTAATCT
63 GGCTTTTCTTACCAATGAATGGCTTTTTCTTC-AGTTTCCTTAGGCAAACATTCAACTGTAATCT
* * * *
1559 GCTTTAGCCAAAAATG-AAAAACAATTCTACTTAAAGTCAAGTA
127 GTTTTAGACAAAAATGTAAAAA-AATTCAACTTAAAGTCAATTA
* ** * * *
1602 TGAGATTAGAAAAATATTTAAAGTGGGTAATAAGGCTTTTGAAGCCATGGGTGACTACAAAT-GG
1 TGAGATTATAAAACCATTTAAAGT-GGTAATAAGGCTTTCGAAGACTTGGGTGACTACAAATAGG
* ** ** ** * * * * * *
1666 ACTTTTCCTACCAATGAATATCTTTTTCTTCTCA-TTTCCCAAGTTAAATAATGAATTATAATAT
65 -CTTTTCTTACCAATGAATGGCTTTTTC-T-TCAGTTTCCTTAGGCAAACATTCAACTGTAATCT
* * * * *
1730 GTTTTA-ATAAAAATGTAAAAAAATTTAGCCTTGAA-TTAATTA
127 GTTTTAGACAAAAATGTAAAAAAATTCA-ACTTAAAGTCAATTA
* * *
1772 TGAGATTATAAAACCTTTTAAAGTGGGTAATAAAGC-TTCTGAAGGCTTGGGTGACTACAAATAG
1 TGAGATTATAAAACCATTTAAAGT-GGTAATAAGGCTTTC-GAAGACTTGGGTGACTACAAATAG
* * *
1836 GCTTTTCTTTACCAATGAAATGGCTTTTTTCTTCATGTTTCCTTTGGCAAACATTCAACTGTGAC
64 GCTTTTC-TTACCAATG-AATGGC-TTTTTCTTCA-GTTTCCTTAGGCAAACATTCAACTGTAAT
*
1901 CTGTTTTAGTCAAAAATGTAAAAAAATTCAACTTAAAGTCAATTA
125 CTGTTTTAGACAAAAATGTAAAAAAATTCAACTTAAAGTCAATTA
* ***************** * * * *
1946 TGATATTATAAAACCATTNNNNNNNNNNNNNNNNNNNTTT-GAAGGA-ATGAGTGACCATAAATA
1 TGAGATTATAAAACCATT--TAAAGTGGTAATAAGGCTTTCGAA-GACTTGGGTGACTACAAATA
* * * * * * * * *
2009 GACTTTTCTTGCCAATGAATGGCTTTTTTTTGAAGTTTCCTGAGGCAGACATTCAATTATTATCT
63 GGCTTTTCTTACCAATGAATGGCTTTTTCTT-CAGTTTCCTTAGGCAAACATTCAACTGTAATCT
**********
2074 GTTTTA-ACTAAAAATG-AAAAAACATTCNNNNNNNNNNCAATTA
127 GTTTTAGAC-AAAAATGTAAAAAA-ATTCAACTTAAAGTCAATTA
* * * * * * * **
2117 TGGGATTATAAAACCATTTAGAGCGAGTAAAAAAGCTTTCGAAGGCATGGGTGACTGTAAAT-GG
1 TGAGATTATAAAACCATTTAAAGTG-GTAATAAGGCTTTCGAAGACTTGGGTGACTACAAATAGG
* * ** * * * * * *
2181 ATCTTTCTTGCCAATGAATATCTTTTTCATCATGTTTTCC-GAGGTAAACAATCAATTATAATCT
65 CT-TTTCTTACCAATGAATGGCTTTTTCTTCA-G-TTTCCTTAGGCAAACATTCAACTGTAATCT
* **********
2245 GTTTTA-ATAAAAAATNNNNNNNNNNTCAACTTCAAA-TCAATTA
127 GTTTTAGA-CAAAAATGTAAAAAAATTCAACTT-AAAGTCAATTA
* * * * * **
2288 TGTGATTATAAAACTATTTAAAGCGAGTAATATA-GCTTTTGAAGGCTTGGGTGACTTTAAATAG
1 TGAGATTATAAAACCATTTAAAGTG-GTAATA-AGGCTTTCGAAGACTTGGGTGACTACAAATAG
* * * * *
2352 GCTTTTCTTGCCAATGAATGGGTTTTTCTTCACATTTCCTTAGGCGAACTTTCAACTGTAATCTG
64 GCTTTTCTTACCAATGAATGGCTTTTTCTTCA-GTTTCCTTAGGCAAACATTCAACTGTAATCTG
* * *
2417 TTTTA-ACCAAAATATAAAAAAATTCAACTTAAAATCAATTA
128 TTTTAGACAAAAATGTAAAAAAATTCAACTTAAAGTCAATTA
2458 T
1 T
2459 NNNNNNNNNN
Statistics
Matches: 1260, Mismatches: 365, Indels: 171
0.70 0.20 0.10
Matches are distributed among these distances:
168 3 0.00
169 45 0.04
170 426 0.34
171 515 0.41
172 153 0.12
173 49 0.04
174 66 0.05
175 1 0.00
176 2 0.00
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.34
Consensus pattern (169 bp):
TGAGATTATAAAACCATTTAAAGTGGTAATAAGGCTTTCGAAGACTTGGGTGACTACAAATAGGC
TTTTCTTACCAATGAATGGCTTTTTCTTCAGTTTCCTTAGGCAAACATTCAACTGTAATCTGTTT
TAGACAAAAATGTAAAAAAATTCAACTTAAAGTCAATTA
Found at i:1735 original size:341 final size:343
Alignment explanation
Indices: 1311--1958 Score: 832
Period size: 341 Copynumber: 1.9 Consensus size: 343
1301 AAATGTACAA
* * * * * *
1311 GTGACTACAAATGGACTTTTCTTGCCAATGAATATCTTTTTCTTCACATTTCTCTAGGTAGACAT
1 GTGACTACAAATGGACTTTTCCTACCAATGAATATCTTTTTCTTCACATTTCCCAAGGTAAAAAT
*
1376 CCAATTACAATTTGTTTTAAGAAAAAATGTAAAAAAACTCA-ACTTCAAATCAATTATG-GCATT
66 CCAATTACAATATGTTTTAA-AAAAAATGTAAAAAAACTCAGACTT-AAATCAATTATGAG-ATT
* *
1439 ATAAAACCATTTAAACGAT-G-AATAAGGCTT-TCGAAGACTTGGGTGACTATAAATAAGCTTTT
128 ATAAAACCATTTAAA-G-TGGTAATAAAGCTTCT-GAAGACTTGGGTGACTACAAATAAGCTTTT
* * *
1501 C-TTGCTAATG-AATGGC-TTTTTCTTCGA-GTTTCCTTAGGCAAACATTCAACTGTAATCTGCT
190 CTTTACCAATGAAATGGCTTTTTTCTTC-ATGTTTCCTTAGGCAAACATTCAACTGTAACCTGCT
*
1562 TTAGCCAAAAATG-AAAAACAATTCTACTTAAAGTCAAGTATGAGATTAGAAAAATATTTAAAGT
254 TTAGCCAAAAATGTAAAAA-AATTCAACTTAAAGTCAAGTATGAGATTAGAAAAATATTTAAAGT
1626 GGGTAATAAGGCTTTTGAAGCCATGG
318 GGGTAATAAGGCTTTTGAAGCCATGG
* *
1652 GTGACTACAAATGGACTTTTCCTACCAATGAATATCTTTTTCTTCTCATTTCCCAAGTTAAATAA
1 GTGACTACAAATGGACTTTTCCTACCAATGAATATCTTTTTCTTCACATTTCCCAAGGTAAA-AA
* * * * * * * *
1717 T-GAATTATAATATGTTTTAATAAAAATGTAAAAAAATTTAGCCTTGAATTAATTATGAGATTAT
65 TCCAATTACAATATGTTTTAAAAAAAATGTAAAAAAACTCAGACTTAAATCAATTATGAGATTAT
* * *
1781 AAAACCTTTTAAAGTGGGTAATAAAGCTTCTGAAGGCTTGGGTGACTACAAATAGGCTTTTCTTT
130 AAAACCATTTAAAGT-GGTAATAAAGCTTCTGAAGACTTGGGTGACTACAAATAAGCTTTTCTTT
* * * *
1846 ACCAATGAAATGGCTTTTTTCTTCATGTTTCCTTTGGCAAACATTCAACTGTGACCTGTTTTAGT
194 ACCAATGAAATGGCTTTTTTCTTCATGTTTCCTTAGGCAAACATTCAACTGTAACCTGCTTTAGC
* * *
1911 CAAAAATGTAAAAAAATTCAACTTAAAGTCAATTATGATATTATAAAA
259 CAAAAATGTAAAAAAATTCAACTTAAAGTCAAGTATGAGATTAGAAAA
1959 CCATTNNNNN
Statistics
Matches: 262, Mismatches: 33, Indels: 21
0.83 0.10 0.07
Matches are distributed among these distances:
338 1 0.00
339 1 0.00
340 45 0.17
341 112 0.43
342 10 0.04
343 7 0.03
344 81 0.31
345 5 0.02
ACGTcount: A:0.36, C:0.15, G:0.14, T:0.35
Consensus pattern (343 bp):
GTGACTACAAATGGACTTTTCCTACCAATGAATATCTTTTTCTTCACATTTCCCAAGGTAAAAAT
CCAATTACAATATGTTTTAAAAAAAATGTAAAAAAACTCAGACTTAAATCAATTATGAGATTATA
AAACCATTTAAAGTGGTAATAAAGCTTCTGAAGACTTGGGTGACTACAAATAAGCTTTTCTTTAC
CAATGAAATGGCTTTTTTCTTCATGTTTCCTTAGGCAAACATTCAACTGTAACCTGCTTTAGCCA
AAAATGTAAAAAAATTCAACTTAAAGTCAAGTATGAGATTAGAAAAATATTTAAAGTGGGTAATA
AGGCTTTTGAAGCCATGG
Found at i:9234 original size:171 final size:169
Alignment explanation
Indices: 8914--9245 Score: 403
Period size: 171 Copynumber: 2.0 Consensus size: 169
8904 NNNNNNNNNN
* * * *
8914 TATAATCTCATAATTGATTTTAAGTTGAGTTTTTTTATATTTTTTATTAATAGATTATAATTGAT
1 TATAACCTCATAATTGAATTTAAGTTGAGTTTTTTTACATTTTTTATTAATAGATTATAATTGAA
* *
8979 TGTCTACCTCAAGTAACGTGAAGAAAAAGATATCCATTGGTAAGAAAAGTCCATTTATAGTAACC
66 TATCTACCTCAAGAAACGTGAAGAAAAAGATATCCATTGGTAAGAAAAGTCCATTTATAGTAACC
*************
9044 NNNNNNNNNNNNNGCCTTATTACACGCTTTAAATGATTT
131 CACACCTTTAAAAGCCTTATTACACGCTTTAAATGATTT
* *
9083 TATAACCTCCTAATTGAATTTAAGTTGATTTTTTTTACATTTTTTATTACAATAGATTATAATTG
1 TATAACCTCATAATTGAATTTAAGTTGAGTTTTTTTACATTTTTTATT--AATAGATTATAATTG
** * * * *
9148 AATATCTACCTTGAGAAACGTGAAGAAGAAGATATCCATTGGTACGAAAAGTCTATTTATAGTCA
64 AATATCTACCTCAAGAAACGTGAAGAAAAAGATATCCATTGGTAAGAAAAGTCCATTTATAGTAA
9213 CCCACACCTTTAAAAGCCTTATTACACGCTTTA
129 CCCACACCTTTAAAAGCCTTATTACACGCTTTA
9246 NNNNNNNNNN
Statistics
Matches: 134, Mismatches: 27, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
169 43 0.32
171 91 0.68
ACGTcount: A:0.33, C:0.13, G:0.12, T:0.38
Consensus pattern (169 bp):
TATAACCTCATAATTGAATTTAAGTTGAGTTTTTTTACATTTTTTATTAATAGATTATAATTGAA
TATCTACCTCAAGAAACGTGAAGAAAAAGATATCCATTGGTAAGAAAAGTCCATTTATAGTAACC
CACACCTTTAAAAGCCTTATTACACGCTTTAAATGATTT
Done.