Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018399380.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2645.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4208
ACGTcount: A:0.35, C:0.10, G:0.12, T:0.32
Warning! 484 characters in sequence are not A, C, G, or T
Found at i:298 original size:171 final size:168
Alignment explanation
Indices: 2--1405 Score: 849
Period size: 171 Copynumber: 8.3 Consensus size: 168
1 A
* ** *
2 TTATGAGATTATAAAACCATTTAAAACGAGTAATAAGGCTTTTG-AAGTAATGAAAGATTATAAA
1 TTATGAGATTATAAAACTATTTAAAACGAGTAATAAGGCTTTTGAAAG-AATG-GTGACTATAAA
* ** * * * *
66 TGGTCCTTTT-TT-CTCAATGAATTG-TTTTTTCTACATATTTCTTGAGGCAGACATCCAATTAT
64 TGG-ACTTTTCTTGC-CAATGAA-TGCCCTTTTCTTCATGTTTCTTGAGGTAGACATTCAATTAT
128 AGTCTGTTTTAATGAAAAATGTAAATAAATTCAACTTAAAAT-ATT
126 AGTCTGTTTTAAT-AAAAATGTAAA-AAATTCAACTTAAAATCA-T
* * *
173 TTATGAGATTATAAAACTATTTAAAGCGAGTAATATGGCTTTCGAAAGAATAGGTGACTATAAAT
1 TTATGAGATTATAAAACTATTTAAAACGAGTAATAAGGCTTTTGAAAGAAT-GGTGACTATAAAT
** * * **
238 AAACTTTTCTTGTCAATGAATGCCCTTCTCTTCACATTTCTTGAGGTAGACATTCAATTATAGTN
65 GGACTTTTCTTGCCAATGAATGCCCTTTTCTTCATGTTTCTTGAGGTAGACATTCAATTATAGT-
******** *
303 NNNNNNNNNA-AAAAATGTAAAAAAATTCAACTTAAAAGCGA-
129 -CTGTTTTAATAAAAATGT-AAAAAATTCAACTTAAAATC-AT
* * * *
344 TTATGAGATTATCAAA-TCATTTAAAACGAGCAATAACGCTTTTGAAGGAATGGGTGACTATAAA
1 TTATGAGATTATAAAACT-ATTTAAAACGAGTAATAAGGCTTTTGAAAGAAT-GGTGACTATAAA
* * * ** **
408 TGGA-TTTGT-TTTCTTAATAAAT-ATCTGTTTCTTTACAT-TTT-TCAAGGTAGACATTCAATT
64 TGGACTTT-TCTTGC-CAATGAATGCCCT-TTTC-TT-CATGTTTCTTGAGGTAGACATTCAATT
* * * *
468 CTAATCTGTTTTAACTACAAATGTAAAAACAATTCAACTTAAAATTAAT
124 ATAGTCTGTTTTAA-TAAAAATGT-AAAA-AATTCAACTTAAAA-TCAT
* * ** ********
517 TT-TTAGATTAT-AAACCATTTAAAGTGAGTAATAAGGCTTTTG-AAGNNNNNNNNNNCTATAAA
1 TTATGAGATTATAAAACTATTTAAAACGAGTAATAAGGCTTTTGAAAG--AATGGTGACTATAAA
* ** * * *
579 TGGACTTTTCTTACCAATGAATG-TGTGTTCCTTCATGTTTCATGAGGTAAACATTCAATTATAG
64 TGGACTTTTCTTGCCAATGAATGCCCT-TTTCTTCATGTTTCTTGAGGTAGACATTCAATTATAG
************* *
643 TCTGTTTTAATAAAAAATGTAAANNNNNNNNNNNNNNAATCAA
128 TCTGTTTTAAT-AAAAATGTAAA-AAATTCAACTTAAAATCAT
* * * * *
686 TTATGAGATTATAAAACCATTTAAAACGAGTAATAAGGTTTTTGAAGGGATGGATGACAATAAAT
1 TTATGAGATTATAAAACTATTTAAAACGAGTAATAAGGCTTTTGAAAGAATGG-TGACTATAAAT
* * * * * *
751 GGACATTTGTTGCTAATGAATG-CCTTTCTTTTCATGTTTCTCGAGGTAGACATTCAATTATAAT
65 GGACTTTTCTTGCCAATGAATGCCCTTT-TCTTCATGTTTCTTGAGGTAGACATTCAATTATAGT
* ********* *
815 CTATTTTAATCAAAAATANNNNNNNNNNTGAACTTAAAATCAAT
129 CTGTTTTAAT-AAAAAT--GTAAAAAATTCAACTTAAAATC-AT
* * * * * *
859 TT-TGAGATTATAAAACTATTTAAAATGAGCAATAAAGCTTTTTAAGGAATAAGTGACTATAAAT
1 TTATGAGATTATAAAACTATTTAAAACGAGTAATAAGGCTTTTGAAAGAAT-GGTGACTATAAAT
* * * * *
923 GGACTTGTCATGCCAATGAATG-CCTTTTCCTTCATGTTTCATGCGGTAGACATTAAATTATAGT
65 GGACTTTTCTTGCCAATGAATGCCCTTTT-CTTCATGTTTCTTGAGGTAGACATTCAATTATAGT
* * *
987 CTGTTTTAACTAAAAATATAAAACAATACAACTTAAAATCAA
129 CTGTTTTAA-TAAAAATGTAAAA-AATTCAACTTAAAATCAT
* * * * *
1029 TTATGAGATTAGAAAACCATTTACAACGAGTAATAAGGCTTTTGAAAGAGTGAGTAACTATAAAT
1 TTATGAGATTATAAAACTATTTAAAACGAGTAATAAGGCTTTTGAAAGAATG-GTGACTATAAAT
* * * * * *
1094 GGACTTTTCTTGCCAATGAATGCCTTTTTCTTTACG-TTCTCGAGGTAGACATTCAATTATAATA
65 GGACTTTTCTTGCCAATGAATGCCCTTTTCTTCATGTTTCTTGAGGTAGACATTCAATTATAGTC
*********
1158 TGTTTTAACNNNNNNNNNNAAAACAATTCAACTTAAAATCAAT
130 TGTTTTAA--TAAAAATGTAAAA-AATTCAACTTAAAATC-AT
* * ** *
1201 TT-TGAGATTACAAAACTATTTGAAGTGAGTAATAAGGCTTTTGAAAGAATGGACGACTATAAAT
1 TTATGAGATTATAAAACTATTTAAAACGAGTAATAAGGCTTTTGAAAGAATGG-TGACTATAAAT
* * * * *
1265 GGACTTTTCCTACCAATGAAT-ACCTTTTCTTTCATGTTTCATGGGGTAGACATTCAATTATAGT
65 GGACTTTTCTTGCCAATGAATGCCCTTTTC-TTCATGTTTCTTGAGGTAGACATTCAATTATAGT
*
1329 CTGTTTTAAACAAAAATGTAAAAAA---AA-TT---A--A-
129 CTGTTTT-AATAAAAATGTAAAAAATTCAACTTAAAATCAT
* *
1360 TTATGAGATTATAAAACCATTTAAAACAAGTAATAAGGCTTTTGAA
1 TTATGAGATTATAAAACTATTTAAAACGAGTAATAAGGCTTTTGAA
1406 NNNNNNNNNN
Statistics
Matches: 933, Mismatches: 247, Indels: 117
0.72 0.19 0.09
Matches are distributed among these distances:
159 2 0.00
160 38 0.04
163 1 0.00
166 2 0.00
167 2 0.00
169 8 0.01
170 80 0.09
171 583 0.62
172 204 0.22
173 13 0.01
ACGTcount: A:0.37, C:0.12, G:0.13, T:0.34
Consensus pattern (168 bp):
TTATGAGATTATAAAACTATTTAAAACGAGTAATAAGGCTTTTGAAAGAATGGTGACTATAAATG
GACTTTTCTTGCCAATGAATGCCCTTTTCTTCATGTTTCTTGAGGTAGACATTCAATTATAGTCT
GTTTTAATAAAAATGTAAAAAATTCAACTTAAAATCAT
Found at i:660 original size:342 final size:338
Alignment explanation
Indices: 1--1405 Score: 1053
Period size: 342 Copynumber: 4.1 Consensus size: 338
* *** *
1 ATTATGAGATTATAAAACCATTTAAAACGAGTAATAAGGCTTTTGAAGTAATGAAAGATTATAAA
1 ATTATGAGATTATAAAACCATTTAAAACGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAA
* * * * * *
66 TGG-TCCTT-TTTTCTCAATGAAT--TGTTTTTTCTACATATTTCTTGAGGCAGACATCCAATTA
66 TGGAT--TTGTTTGCT-AATGAATCCTCTTTCTT-TACAT-TTT-TCGAGGTAGACATTCAATTA
* * * *
127 TAGTCTGTTTTAA-TGAAAAATGTAAATA-AATTCAACTTAAAAT-ATTTTATGAGATTATAAAA
125 TAATCTGTTTTAACTCAAAAA--TAAAAACAATTCAACTTAAAATCAATTT-TGAGATTAT-AAA
* * * *** ** * **
189 CTATTTAAAGCGAGTAATATGGCTTTCGAAAGAATAGGTGACTATAAATAAACTTTTCTTGTCAA
186 CTATTTAAAGTGAGTAATAAGGCTTTTG-AAGAATAAACGACTATAAATGGACTTTTCATACCAA
* ** * **********
254 TGAATGCC-CTTCTCTTCACATTTCTTGAGGTAGACATTCAATTATAGTNNNNNNNNNNAAAAAA
250 TGAATGCCTTTTC-CTTCATGTTTCATGAGGTAGACATTCAATTATAGTCTGTTTTAATAAAAAA
* * *
318 TGTAAAAAAATTCAACTTAAAAGCG
314 TGTAAAAAAATACAACTTAAAATCA
* * * *
343 ATTATGAGATTATCAAATCATTTAAAACGAGCAATAACGCTTTTGAAGGAATGGGTGACTATAAA
1 ATTATGAGATTATAAAACCATTTAAAACGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAA
* * * * * *
408 TGGATTTGTTTTCTTAATAAATATCTGTTTCTTTACATTTTTCAAGGTAGACATTCAATTCTAAT
66 TGGATTTGTTTGC-TAATGAAT-CCTCTTTCTTTACATTTTTCGAGGTAGACATTCAATTATAAT
** * * *
473 CTGTTTTAACTACAAATGTAAAAACAATTCAACTTAAAATTAATTTTTAGATTATAAACCATTTA
129 CTGTTTTAACT-CAAAAATAAAAACAATTCAACTTAAAATCAATTTTGAGATTATAAACTATTTA
********* * *
538 AAGTGAGTAATAAGGCTTTTGAAGNNNNNNNNNNCTATAAATGGACTTTTCTTACCAATGAATGT
193 AAGTGAGTAATAAGGCTTTTGAAG-AATAAACGACTATAAATGGACTTTTCATACCAATGAATGC
* * * **
603 GTGTTCCTTCATGTTTCATGAGGTAAACATTCAATTATAGTCTGTTTTAATAAAAAATGTAAANN
257 CTTTTCCTTCATGTTTCATGAGGTAGACATTCAATTATAGTCTGTTTTAATAAAAAATGTAAAAA
************
668 NNNNNNNNNNNNAATCA
322 AATACAACTTAAAATCA
* * * *
685 ATTATGAGATTATAAAACCATTTAAAACGAGTAATAAGGTTTTTGAAGGGATGGATGACAATAAA
1 ATTATGAGATTATAAAACCATTTAAAACGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAA
* *
750 TGGACATTTG-TTGCTAATGAATGC-CTTTCTTTTCATGTTTCTCGAGGTAGACATTCAATTATA
66 TGG--ATTTGTTTGCTAATGAATCCTCTTTCTTTACAT-TTT-TCGAGGTAGACATTCAATTATA
* ******** *
813 ATCTATTTTAA-TCAAAAATANNNNNNNNNNTGAACTTAAAATCAATTTTGAGATTATAAAACTA
127 ATCTGTTTTAACTCAAAAATA--AAAACAATTCAACTTAAAATCAATTTTGAGATTAT-AAACTA
* * * * ** * *
877 TTTAAAATGAGCAATAAAGCTTTTTAAGGAATAAGTGACTATAAATGGACTTGTCATGCCAATGA
189 TTTAAAGTGAGTAATAAGGCTTTTGAA-GAATAAACGACTATAAATGGACTTTTCATACCAATGA
* * *
942 ATGCCTTTTCCTTCATGTTTCATGCGGTAGACATTAAATTATAGTCTGTTTTAACT-AAAAATAT
253 ATGCCTTTTCCTTCATGTTTCATGAGGTAGACATTCAATTATAGTCTGTTTTAA-TAAAAAATGT
*
1006 AAAACAATACAACTTAAAATCA
317 AAAAAAATACAACTTAAAATCA
* * * * * *
1028 ATTATGAGATTAGAAAACCATTTACAACGAGTAATAAGGCTTTTGAAAGAGTGAGTAACTATAAA
1 ATTATGAGATTATAAAACCATTTAAAACGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAA
* * * *
1093 TGGACTTT-TCTTGCCAATGAATGCCTTTTTCTTTAC-GTTCTCGAGGTAGACATTCAATTATAA
66 TGGA-TTTGT-TTGCTAATGAAT-CCTCTTTCTTTACATTTTTCGAGGTAGACATTCAATTATAA
* ********* *
1156 TATGTTTTAACNNNNNNNNNNAAAACAATTCAACTTAAAATCAATTTTGAGATTACAAAACTATT
128 TCTGTTTTAAC-TCAAAAATAAAAACAATTCAACTTAAAATCAATTTTGAGATTA-TAAACTATT
* ** *
1221 TGAAGTGAGTAATAAGGCTTTTGAAAGAATGGACGACTATAAATGGACTTTTCCTACCAATGAAT
191 TAAAGTGAGTAATAAGGCTTTTG-AAGAATAAACGACTATAAATGGACTTTTCATACCAATGAAT
* * *
1286 ACCTTTTCTTTCATGTTTCATGGGGTAGACATTCAATTATAGTCTGTTTTAA-ACAAAAATGT--
255 GCCTTTTCCTTCATGTTTCATGAGGTAGACATTCAATTATAGTCTGTTTTAATA-AAAAATGTAA
1348 AAAAA-A-AA--T----T-A
319 AAAAATACAACTTAAAATCA
*
1359 ATTATGAGATTATAAAACCATTTAAAACAAGTAATAAGGCTTTTGAA
1 ATTATGAGATTATAAAACCATTTAAAACGAGTAATAAGGCTTTTGAA
1406 NNNNNNNNNN
Statistics
Matches: 833, Mismatches: 198, Indels: 75
0.75 0.18 0.07
Matches are distributed among these distances:
331 45 0.05
332 1 0.00
336 1 0.00
338 2 0.00
339 1 0.00
340 20 0.02
341 11 0.01
342 494 0.59
343 223 0.27
344 20 0.02
345 15 0.02
ACGTcount: A:0.37, C:0.12, G:0.13, T:0.34
Consensus pattern (338 bp):
ATTATGAGATTATAAAACCATTTAAAACGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAA
TGGATTTGTTTGCTAATGAATCCTCTTTCTTTACATTTTTCGAGGTAGACATTCAATTATAATCT
GTTTTAACTCAAAAATAAAAACAATTCAACTTAAAATCAATTTTGAGATTATAAACTATTTAAAG
TGAGTAATAAGGCTTTTGAAGAATAAACGACTATAAATGGACTTTTCATACCAATGAATGCCTTT
TCCTTCATGTTTCATGAGGTAGACATTCAATTATAGTCTGTTTTAATAAAAAATGTAAAAAAATA
CAACTTAAAATCA
Found at i:2089 original size:171 final size:169
Alignment explanation
Indices: 1790--3877 Score: 1761
Period size: 171 Copynumber: 12.2 Consensus size: 169
1780 NNNNNNNNNN
* * * * * ** *
1790 AAAATCAATTATTAGTTTATAAAAGCATTTGAAGCGAGTAATAAAGATTTTGAAGGAATGAAAAA
1 AAAATCAATTATGAGATTATAAAA-CATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGAGA
* * * *
1855 CTATAAATGGACATTTCTTAC-CAA-GAAATGGCTTTTTCTTCACGTTTCTTAAGATAGACATTC
65 CTATAAATGGACTTTTCTT-CTCAATG-AATGGCTTTTTCTACATGTTTC-TAAGGTAGACATTC
* * ** *
1918 AATTATAGTCAGTTTTAATTAAAAACGTTAAAAAATTCAACTT
127 AATTATAATCTGTTTTAATTAAAAATATAAAAAAATTCAACTT
* * * * * * ** *
1961 AAAATCAATTATTAGTTTATAAAAGCATTTGAAGCGAGTAATAAAGATTTTGAAAGAATGAAAAA
1 AAAATCAATTATGAGATTATAAAA-CATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGAGA
** * * *
2026 CTATAAACAGACTTTTCTTCTCAATGAATGGCTTTTTCTACACGTTTCCTAAGGCAAACATTCAA
65 CTATAAATGGACTTTTCTTCTCAATGAATGGCTTTTTCTACATGTTT-CTAAGGTAGACATTCAA
* * * *
2091 TTATAATCTATTTTTAA-CAAAAATGTAAAATAAATTTAACTT
129 TTATAATCT-GTTTTAATTAAAAATATAAAA-AAATTCAACTT
* * *
2133 AAAATCAATTTTGAGATTATAAAACTATTTAAAAG-GAGTAATAAGGCTTTTGAAGGAAAGGGTG
1 AAAATCAATTATGAGATTATAAAAC-ATTT-AAAGCGAGTAATAAGGCTTTTGAAGGAATGGGAG
* * * ** * *
2197 ACTAGAAATGGACTTTTCTT-TCCAATGAATGTCTTTTCCTTTATGTTTTTTGAA-GTAAACATT
64 ACTATAAATGGACTTTTCTTCT-CAATGAATGGCTTTTTCTACATG-TTTCT-AAGGTAGACATT
* * **
2260 CAATTATAGTTTGTTTTAACCAAAAATATAAAAACAATT-AACTT
126 CAATTATAATCTGTTTTAATTAAAAATATAAAAA-AATTCAACTT
* * *
2304 AAAATCAATTATGAGATTATAAAACTATTTCAAGCGAGTAATAAGGCTTTTGAAGGAATTGAAGA
1 AAAATCAATTATGAGATTATAAAAC-ATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGAGA
* * * * * *
2369 CTATAAATGAAATTTT-TTTTCCAATGAATGGCTTTTT-TACACGTTTAC-AGAGGCAGGCATTC
65 CTATAAATGGACTTTTCTTCT-CAATGAATGGCTTTTTCTACATGTTT-CTA-AGGTAGACATTC
** * * * *
2431 AATTATAGCCTATTTTAA-TAAAAATCTAAATAAATTCATCTT
127 AATTATAATCTGTTTTAATTAAAAATATAAAAAAATTCAACTT
* * ** * *
2473 AAAATCAATTATGAGAGTATAAAACTATTTAAACCGAGTAATAATACTTTTGAAGGAATAGGTGA
1 AAAATCAATTATGAGATTATAAAAC-ATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGAGA
* * ** ** * * * *
2538 ATATAAATAGACTTTTCTTGGCAATGAATTCCTTTCTCTTCAGGTTTCTAAACGTAGACATTCAA
65 CTATAAATGGACTTTTCTTCTCAATGAATGGCTTTTTCTACATGTTTCT-AAGGTAGACATTCAA
* *
2603 TTATAATCTGTTTTAATGAAAAATATAAAAAAAATCAAACTT
129 TTATAATCTGTTTTAATTAAAAATATAAAAAAATTC-AACTT
* * ** * *
2645 AAAATCAATTTTGAGTTTATAAAATCATTTAAAATGAGTAGTAAGGCTTTTGAAGGAATGAGTA-
1 AAAATCAATTATGAGATTATAAAA-CATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATG-GGAG
* * ** ** * *
2709 ACTAAAAATGGACTTTT-TTCCCAATGAATATCTTTTTCTTTATGTTTCTCGAGGTAGATATTCA
64 ACTATAAATGGACTTTTCTTCTCAATGAATGGCTTTTTCTACATGTTTCT-AAGGTAGACATTCA
*** * *
2773 ATTATAATCTGTTTTCGCTAAAAACATAAAACAAATTCAACTA
128 ATTATAATCTGTTTTAATTAAAAATATAAAA-AAATTCAACTT
* * * * *
2816 AAAATCAATTATGAGATTATAAAATCAGTTAAAGCTAGTAATAAGGCTATTGAAAGAATGGGTGA
1 AAAATCAATTATGAGATTATAAAA-CATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGAGA
* * * * * * * * * *
2881 CTATAAATGGACTTTTTTTTTTTAATAAATGCCTTTTTTTTCATGTTTCTCGAGGCAGATATTCA
65 CTATAAATGGAC-TTTTCTTCTCAATGAATGGCTTTTTCTACATGTTTCT-AAGGTAGACATTCA
** * *
2946 ATTATAA-CTTGTTTTAACCAAAAATGTAAAAAAATTTAACTT
128 ATTATAATC-TGTTTTAATTAAAAATATAAAAAAATTCAACTT
* * *
2988 AAAATCAATCATAAGATTATAAAA-ACTTTAAAAGCGAGTAATAAGGCTTTTGAAGGAAAGGGAG
1 AAAATCAATTATGAGATTATAAAACA-TTT-AAAGCGAGTAATAAGGCTTTTGAAGGAATGGGAG
* ** * **
3052 ACTATAAATGGACTTTTCATAGCAATGAATGGCTTTTTCTACATGTTTCTTGAGACAGACATTCA
64 ACTATAAATGGACTTTTCTTCTCAATGAATGGCTTTTTCTACATGTTTC-TAAGGTAGACATTCA
** * * * *
3117 ATTATGGTTTGTTTTAATAAAAAATGTAAATAAATTCAACTT
128 ATTATAATCTGTTTTAATTAAAAATATAAAAAAATTCAACTT
* *
3159 AAAATCATTTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGC-TTTGAAAGGAATGGGAG
1 AAAATCAATTATGAGATTATAAAA-CATTTAAAGCGAGTAATAAGGCTTTTG-AAGGAATGGGAG
* * * * * * **
3223 ATTATAAATAGA-ATGTCTTCTCAATGAATTGG-TTCTTCTACATATTTTCTAAGACAGACATTC
64 ACTATAAATGGACTTTTCTTCTCAATGAA-TGGCTTTTTCTACAT-GTTTCTAAGGTAGACATTC
* * * *
3286 AGTTATAATCTGTTTTAACTAAAAATATAAAAAAATTCATCGT
127 AATTATAATCTGTTTTAATTAAAAATATAAAAAAATTCAACTT
*
3329 AAAATCAATTATGAGATTATAAAATCATTTGAAA-CGAGTAATAAGGCTTTTGAA-GAGATGGGT
1 AAAATCAATTATGAGATTATAAAA-CATTT-AAAGCGAGTAATAAGGCTTTTGAAGGA-ATGGGA
* * * * * * ** *
3392 GACTATAAATGGACATTTCTTATCAATAAATGCCTATTACTACACATTTCTCAACGTAGACATTC
63 GACTATAAATGGACTTTTCTTCTCAATGAATGGCTTTTTCTACATGTTTCT-AAGGTAGACATTC
* * * *
3457 AATTATAATCTATTTTAATGAAAAAAATTAAAAAATTCAACTT
127 AATTATAATCTGTTTTAATTAAAAATATAAAAAAATTCAACTT
* * *
3500 AAAATCAATTATGAGATTATAAAACCATTTAAAGCCAGTAATAAGGCTTTTGAAGGGATGGGTGA
1 AAAATCAATTATGAGATTATAAAA-CATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGAGA
* * * * * *
3565 CTATAAATGGACTTGTT-TTCTCAATGAGTGGTTTTTTTTTACATGTTTCTCTAGATAGACATTA
65 CTATAAATGGACTT-TTCTTCTCAATGAATGG-CTTTTTCTACATGTTTCT-AAGGTAGACATTC
* * * * * *
3629 AATTATAGTCTATTTAAATGAAAAATATAAATAAATTTAACTT
127 AATTATAATCTGTTTTAATTAAAAATATAAAAAAATTCAACTT
********** * * *
3672 AAAATCAATTATGAGATTATAAAACCANNNNNNNNNNGTAATAAGGCTTTTGAACGAATAGGTGA
1 AAAATCAATTATGAGATTATAAAA-CATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGAGA
* * * * * *
3737 CTATAAATGGACTTTTCTTGTCAATGAAAGCCTTTATCTTCATGTTTCTCGAGGTAGACATTCAA
65 CTATAAATGGACTTTTCTTCTCAATGAATGGCTTTTTCTACATGTTTCT-AAGGTAGACATTCAA
** * * *
3802 TTATAATCTGTTTTAACCCAAAATTTTAAAAAAATTTAACTT
129 TTATAATCTGTTTTAA-TTAAAAATATAAAAAAATTCAACTT
* *
3844 AAAATCAATTTTGAGATTATAAAACCTTTTAAAG
1 AAAATCAATTATGAGATTATAAAA-CATTTAAAG
3878 TGAGNNNNNN
Statistics
Matches: 1567, Mismatches: 298, Indels: 103
0.80 0.15 0.05
Matches are distributed among these distances:
168 5 0.00
169 104 0.07
170 205 0.13
171 709 0.45
172 471 0.30
173 73 0.05
ACGTcount: A:0.40, C:0.11, G:0.13, T:0.35
Consensus pattern (169 bp):
AAAATCAATTATGAGATTATAAAACATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGAGAC
TATAAATGGACTTTTCTTCTCAATGAATGGCTTTTTCTACATGTTTCTAAGGTAGACATTCAATT
ATAATCTGTTTTAATTAAAAATATAAAAAAATTCAACTT
Found at i:2896 original size:343 final size:341
Alignment explanation
Indices: 1790--3877 Score: 1717
Period size: 343 Copynumber: 6.1 Consensus size: 341
1780 NNNNNNNNNN
* * * * * ****
1790 AAAATCAATTATTAGTTTATAAAAGCATTTGAAGCGAGTAATAAAGATTTTGAAGGAATGAAAAA
1 AAAATCAATTATGAGATTATAAAA-CATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGA
* * * * *
1855 CTATAAATGGACATTTCTTAC-CAA-GAAATGGCTTTTTCTTCACGTTTCTTAAGATAGACATTC
65 CTATAAATGGACTTTTCTT-CTCAATG-AATGCCTTTCTCTTCAGGTTTCTAAAG-TAGACATTC
* * * ** * * * *
1918 AATTATAGTCAGTTTTAATTAAAAACGTTAAAAAATTC-AACTTAAAATCAATTATTAGTTTATA
127 AATTATAATCTGTTTTAATCAAAAATATAAAAAAAATCTAACTTAAAATCAATTATGAGATTATA
* * * * * * ** ** *
1982 AAAGCATTTGAAGCGAGTAATAAAGATTTTGAAAGAATGAAAAACTATAAACAGACTTTTCTTCT
192 AAATCATTTAAAACGAGTAATAAGGCTTTTGAAGGAATGAGTAACTATAAATGGACTTTTCTTAT
* * * *
2047 CAATGAATGGCTTTTTCTACACGTTTC-CTAAGGCAAACATTCAATTATAATCTATTTTTAACAA
257 CAATGAATGGCTTTTTCTACACGTTTCTC-GAGGCAGACATTCAATTATAATCT-GTTTTAATAA
** *
2111 AAATGTAAAATAAATTTAACTT
320 AAACATAAAATAAATTCAACTT
* *
2133 AAAATCAATTTTGAGATTATAAAACTATTTAAAAG-GAGTAATAAGGCTTTTGAAGGAAAGGGTG
1 AAAATCAATTATGAGATTATAAAAC-ATTT-AAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTG
* * * * * * *
2197 ACTAGAAATGGACTTTTCTT-TCCAATGAATGTCTTT-TCCTTTATGTTTTTTGAAGTAAACATT
64 ACTATAAATGGACTTTTCTTCT-CAATGAATGCCTTTCT-CTTCA-GGTTTCTAAAGTAGACATT
* * * *
2260 CAATTATAGTTTGTTTTAACCAAAAATATAAAAACAAT-TAACTTAAAATCAATTATGAGATTAT
126 CAATTATAATCTGTTTTAATCAAAAATATAAAAAAAATCTAACTTAAAATCAATTATGAGATTAT
* * * *
2324 AAAA-CTATTTCAAGCGAGTAATAAGGCTTTTGAAGGAATTGA--AGACTATAAATGAAATTTT-
191 AAAATC-ATTTAAAACGAGTAATAAGGCTTTTGAAGGAA-TGAGTA-ACTATAAATGGACTTTTC
* * * ** *
2385 TTTTCCAATGAATGGCTTTTT-TACACGTTTAC-AGAGGCAGGCATTCAATTATAGCCTATTTTA
253 TTAT-CAATGAATGGCTTTTTCTACACGTTT-CTCGAGGCAGACATTCAATTATAATCTGTTTTA
*
2448 ATAAAAATC-T-AAATAAATTCATCTT
316 ATAAAAA-CATAAAATAAATTCAACTT
* * ** *
2473 AAAATCAATTATGAGAGTATAAAACTATTTAAACCGAGTAATAATACTTTTGAAGGAATAGGTGA
1 AAAATCAATTATGAGATTATAAAAC-ATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGA
* * ** *
2538 ATATAAATAGACTTTTCTTGGCAATGAATTCCTTTCTCTTCAGGTTTCTAAACGTAGACATTCAA
65 CTATAAATGGACTTTTCTTCTCAATGAATGCCTTTCTCTTCAGGTTTCTAAA-GTAGACATTCAA
* * * *
2603 TTATAATCTGTTTTAATGAAAAATATAAAAAAAATCAAACTTAAAATCAATTTTGAGTTTATAAA
129 TTATAATCTGTTTTAATCAAAAATATAAAAAAAATCTAACTTAAAATCAATTATGAGATTATAAA
* * * **
2668 ATCATTTAAAATGAGTAGTAAGGCTTTTGAAGGAATGAGTAACTAAAAATGGACTTTT-TTCCCA
194 ATCATTTAAAACGAGTAATAAGGCTTTTGAAGGAATGAGTAACTATAAATGGACTTTTCTTATCA
** ** * * * **
2732 ATGAATATCTTTTTCTTTATGTTTCTCGAGGTAGATATTCAATTATAATCTGTTTTCGCTAAAAA
259 ATGAATGGCTTTTTCTACACGTTTCTCGAGGCAGACATTCAATTATAATCTGTTTT-AATAAAAA
* *
2797 CATAAAACAAATTCAACTA
323 CATAAAATAAATTCAACTT
* * * *
2816 AAAATCAATTATGAGATTATAAAATCAGTTAAAGCTAGTAATAAGGCTATTGAAAGAATGGGTGA
1 AAAATCAATTATGAGATTATAAAA-CATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGA
* * * * * * * * * * *
2881 CTATAAATGGACTTTTTTTTTTTAATAAATGCCTTTTTTTTCATGTTTCTCGAGGCAGATATTCA
65 CTATAAATGGAC-TTTTCTTCTCAATGAATGCCTTTCTCTTCAGGTTTCT-AAAGTAGACATTCA
* * * * *
2946 ATTATAA-CTTGTTTTAACCAAAAATGT-AAAAAAATTTAACTTAAAATCAATCATAAGATTATA
128 ATTATAATC-TGTTTTAATCAAAAATATAAAAAAAATCTAACTTAAAATCAATTATGAGATTATA
* * * *
3009 AAAAC-TTTAAAAGCGAGTAATAAGGCTTTTGAAGGAAAG-GGAGACTATAAATGGACTTTTCAT
192 AAATCATTTAAAA-CGAGTAATAAGGCTTTTGAAGGAATGAGTA-ACTATAAATGGACTTTTCTT
* * * * ** *
3072 AGCAATGAATGGCTTTTTCTACATGTTTCTTGAGACAGACATTCAATTATGGTTTGTTTTAATAA
255 ATCAATGAATGGCTTTTTCTACACGTTTCTCGAGGCAGACATTCAATTATAATCTGTTTTAATAA
*
3137 AAA-ATGTAAATAAATTCAACTT
320 AAACAT-AAAATAAATTCAACTT
* * *
3159 AAAATCATTTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGC-TTTGAAAGGAATGGGAG
1 AAAATCAATTATGAGATTATAAAA-CATTTAAAGCGAGTAATAAGGCTTTTG-AAGGAATGGGTG
* * * * * * ** *
3223 ATTATAAATAGA-ATGTCTTCTCAATGAATTG--GTTCTTCTACATATTTTCT-AAGACAGACAT
64 ACTATAAATGGACTTTTCTTCTCAATGAA-TGCCTTTC-TCTTCA-GGTTTCTAAAG-TAGACAT
* * * *
3284 TCAGTTATAATCTGTTTTAA-CTAAAAATATAAAAAAATTC-ATCGTAAAATCAATTATGAGATT
125 TCAATTATAATCTGTTTTAATC-AAAAATATAAAAAAAATCTAACTTAAAATCAATTATGAGATT
* * * *
3347 ATAAAATCATTTGAAACGAGTAATAAGGCTTTTGAA-GAGATGGGTGACTATAAATGGACATTTC
189 ATAAAATCATTTAAAACGAGTAATAAGGCTTTTGAAGGA-ATGAGTAACTATAAATGGACTTTTC
* * * * * * * * *
3411 TTATCAATAAATGCCTATTACTACACATTTCTCAACGTAGACATTCAATTATAATCTATTTTAAT
253 TTATCAATGAATGGCTTTTTCTACACGTTTCTCGAGGCAGACATTCAATTATAATCTGTTTTAAT
* *
3476 GAAAAAAATTAAA-AAATTCAACTT
318 -AAAAACATAAAATAAATTCAACTT
* *
3500 AAAATCAATTATGAGATTATAAAACCATTTAAAGCCAGTAATAAGGCTTTTGAAGGGATGGGTGA
1 AAAATCAATTATGAGATTATAAAA-CATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGA
* ** * * * ** *
3565 CTATAAATGGACTTGTT-TTCTCAATGAGTGGTTTTTTTTTACATGTTTCTCTAGATAGACATTA
65 CTATAAATGGACTT-TTCTTCTCAATGAATGCCTTTCTCTT-CAGGTTTCTAAAG-TAGACATTC
* * * * * *
3629 AATTATAGTCTATTTAAATGAAAAATAT-AAATAAATTTAACTTAAAATCAATTATGAGATTATA
127 AATTATAATCTGTTTTAATCAAAAATATAAAAAAAATCTAACTTAAAATCAATTATGAGATTATA
* ********** * * *
3693 AAACCANNNNNNNNNNGTAATAAGGCTTTTGAACGAAT-AGGTGACTATAAATGGACTTTTCTTG
192 AAATCATTTAAAACGAGTAATAAGGCTTTTGAAGGAATGA-GTAACTATAAATGGACTTTTCTTA
* * * * * * *
3757 TCAATGAAAGCCTTTATCTTCATGTTTCTCGAGGTAGACATTCAATTATAATCTGTTTTAACCCA
256 TCAATGAATGGCTTTTTCTACACGTTTCTCGAGGCAGACATTCAATTATAATCTGTTTTAA--TA
*** *
3822 AAATTTTAAAA-AAATTTAACTT
319 AAAACATAAAATAAATTCAACTT
* *
3844 AAAATCAATTTTGAGATTATAAAACCTTTTAAAG
1 AAAATCAATTATGAGATTATAAAA-CATTTAAAG
3878 TGAGNNNNNN
Statistics
Matches: 1406, Mismatches: 278, Indels: 121
0.78 0.15 0.07
Matches are distributed among these distances:
339 10 0.01
340 165 0.12
341 348 0.25
342 117 0.08
343 591 0.42
344 174 0.12
345 1 0.00
ACGTcount: A:0.40, C:0.11, G:0.13, T:0.35
Consensus pattern (341 bp):
AAAATCAATTATGAGATTATAAAACATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGAC
TATAAATGGACTTTTCTTCTCAATGAATGCCTTTCTCTTCAGGTTTCTAAAGTAGACATTCAATT
ATAATCTGTTTTAATCAAAAATATAAAAAAAATCTAACTTAAAATCAATTATGAGATTATAAAAT
CATTTAAAACGAGTAATAAGGCTTTTGAAGGAATGAGTAACTATAAATGGACTTTTCTTATCAAT
GAATGGCTTTTTCTACACGTTTCTCGAGGCAGACATTCAATTATAATCTGTTTTAATAAAAACAT
AAAATAAATTCAACTT
Found at i:3320 original size:684 final size:674
Alignment explanation
Indices: 1790--3881 Score: 2048
Period size: 684 Copynumber: 3.1 Consensus size: 674
1780 NNNNNNNNNN
* * * * * * * *
1790 AAAATCAATTATTAGTTTATAAAAGCATTTGAAGCGAGTAATAAAGA-TTTTGAAGGAAT-GAAA
1 AAAATCATTTATGAGATTATAAAACCATTTAAAGTGAGTAAT-AAGACTTTTGAAGGAATAGGAG
* * ** * * * *
1853 AACTATAAATGGACATTTCTTAC-CAA-GAAATGGCTTTTTCTTCACGTTTCTTAAGATAGACAT
65 AA-TATAAATAGACATGTCTT-CGCAATG-AATTCCTTTCTCTACAAGTTTC-TAAGACAGACAT
* * *
1916 TCAATTATAGTCAGTTTTAATTAAAAACGT-TAAAAAATTCAACTTAAAATCAATTATT-AGTTT
126 TCAATTATAATCTGTTTTAA-TAAAAA--TATAAAAAAATCAACTTAAAATCAATT-TTGAGTTT
* * * * ** **
1979 ATAAAAGCATTTGAAGCGAGTAATAAAGATTTTGAAAGAATGAAAAACTATAAACAGACTTTTCT
187 ATAAAATCATTTGAAACGAGTAATAAGGCTTTTG-AAGAATGAGTAACTATAAATGGACTTTT-T
* * *
2044 TCTCAATGAATGGCTTTTTCTACACGTTTC-CTAAGGCAAACATTCAATTATAATCTATTTT--T
250 TCTCAATGAATGCCTTTTTCTACACGTTTCTC-AAGGTAGACATTCAATTATAATCTATTTTACT
* * *
2106 AACAAAAATGTAAAATAAATTTAACTTAAAATCAATTTTGAGATTATAAAACTATTTAAAAG-GA
314 AA-AAAAA--TAAAA-AAATTCAACTTAAAATCAATTATGAGATTATAAAAC-ATTT-AAAGCCA
* * * * *
2170 GTAATAAGGCTTTTGAAGGAAAGGGTGACTAGAAATGGACTTTTCTTTCCAATGAATGTCTTTTC
373 GTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTTTTTTCAATGAATGCCTTTT-
* * * * * **
2235 CTTT-ATGTTTTTTGAAGTAAACATTCAATTATAGTTTGTTTTAACCAAAAATATAAAAACAA-T
437 TTTTCATGTTTCTCGAGGTAGACATTCAATTATAACTTGTTTTAACCAAAAATATAAAAA-AATT
**
2298 TAACTTAAAATCAATTATGAGATTAT-AAAACTATTTCAAGCGAGTAATAAGGCTTTTGAAGGAA
501 TAACTTAAAATCAATTATGAGATTATAAAAACT-TTAAAAGCGAGTAATAAGGCTTTTGAAGGAA
* * * * * * *
2362 TTGAAGACTATAAATGAAATTTTTTTTCCAATGAATGGCTTTTT-TACACGTTTAC-AGAGGCAG
565 -AGGAGACTATAAATG-GACTTTTCTTGCAATGAATGGCTTTTTCTACATGTTT-CTAGAGGCAG
* * * *
2425 GCATTCAATTATAGCCTATTTTAATAAAAATCTAAATAAATTCATCTT
627 ACATTCAATTATAGTCTGTTTTAATAAAAATCTAAATAAATTCAACTT
* * * ** * *
2473 AAAATCAATTATGAGAGTATAAAACTATTTAAACCGAGTAATAATACTTTTGAAGGAATAGGTGA
1 AAAATCATTTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGACTTTTGAAGGAATAGGAGA
* * * * *
2538 ATATAAATAGACTTTTCTTGGCAATGAATTCCTTTCTCTTCAGGTTTCTAA-ACGTAGACATTCA
66 ATATAAATAGACATGTCTTCGCAATGAATTCCTTTCTCTACAAGTTTCTAAGAC--AGACATTCA
2602 ATTATAATCTGTTTTAATGAAAAATATAAAAAAAATCAAACTTAAAATCAATTTTGAGTTTATAA
129 ATTATAATCTGTTTTAAT-AAAAATAT-AAAAAAATC-AACTTAAAATCAATTTTGAGTTTATAA
* * * * *
2667 AATCATTTAAAATGAGTAGTAAGGCTTTTGAAGGAATGAGTAACTAAAAATGGACTTTTTTCCCA
191 AATCATTTGAAACGAGTAATAAGGCTTTTGAA-GAATGAGTAACTATAAATGGACTTTTTTCTCA
** ** * * * * *
2732 ATGAATATCTTTTTCTTTATGTTTCTCGAGGTAGATATTCAATTATAATCTGTTTTCGCTAAAAA
255 ATGAATGCCTTTTTCTACACGTTTCTCAAGGTAGACATTCAATTATAATCTATTTT-ACTAAAAA
* * * *
2797 CATAAAACAAATTCAACTAAAAATCAATTATGAGATTATAAAATCAGTTAAAGCTAGTAATAAGG
319 AATAAAA-AAATTCAACTTAAAATCAATTATGAGATTATAAAA-CATTTAAAGCCAGTAATAAGG
* * * *
2862 CTATTGAAAGAATGGGTGACTATAAATGGACTTTTTTTTTTTAATAAATGCCTTTTTTTTCATGT
382 CTTTTGAAGGAATGGGTGACTATAAATGGAC-TTTTTTTTTCAATGAATGCCTTTTTTTTCATGT
* * *
2927 TTCTCGAGGCAGATATTCAATTATAACTTGTTTTAACCAAAAATGTAAAAAAATTTAACTTAAAA
446 TTCTCGAGGTAGACATTCAATTATAACTTGTTTTAACCAAAAATATAAAAAAATTTAACTTAAAA
* *
2992 TCAATCATAAGATTATAAAAACTTTAAAAGCGAGTAATAAGGCTTTTGAAGGAAAGGGAGACTAT
511 TCAATTATGAGATTATAAAAACTTTAAAAGCGAGTAATAAGGCTTTTGAAGGAAA-GGAGACTAT
* * *
3057 AAATGGACTTTTCATAGCAATGAATGGCTTTTTCTACATGTTTCTTGAGACAGACATTCAATTAT
575 AAATGGACTTTTC-TTGCAATGAATGGCTTTTTCTACATGTTTCTAGAGGCAGACATTCAATTAT
* * *
3122 GGTTTGTTTTAATAAAAAATGTAAATAAATTCAACTT
639 AGTCTGTTTTAAT-AAAAATCTAAATAAATTCAACTT
* *
3159 AAAATCATTTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGC-TTTGAAAGGAATGGGAG
1 AAAATCATTTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGACTTTTG-AAGGAATAGGAG
* * ** *
3223 ATTATAAATAGA-ATGTCTTCTCAATGAATT-GGTTCTTCTACATATTTTCTAAGACAGACATTC
65 AATATAAATAGACATGTCTTCGCAATGAATTCCTTTC-TCTACA-AGTTTCTAAGACAGACATTC
* * * * *
3286 AGTTATAATCTGTTTTAACTAAAAATATAAAAAAATTCATCGTAAAATCAATTATGAGATTATAA
128 AATTATAATCTGTTTTAA-TAAAAATATAAAAAAA-TCAACTTAAAATCAATTTTGAGTTTATAA
* * * *
3351 AATCATTTGAAACGAGTAATAAGGCTTTTGAAGAGATGGGTGACTATAAATGGACATTTCTTATC
191 AATCATTTGAAACGAGTAATAAGGCTTTTGAAGA-ATGAGTAACTATAAATGGAC-TTTTTTCTC
* * * * * *
3416 AATAAATGCCTATTACTACACATTTCTCAACGTAGACATTCAATTATAATCTATTTTAATGAAAA
254 AATGAATGCCTTTTTCTACACGTTTCTCAAGGTAGACATTCAATTATAATCTATTTTACT-AAAA
*
3481 AAATTAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCCAGTAATAAGG
318 AAATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAA-CATTTAAAGCCAGTAATAAGG
* * * * **
3546 CTTTTGAAGGGATGGGTGACTATAAATGGACTTGTTTTCTCAATGAGTGGTTTTTTTTTACATGT
382 CTTTTGAAGGAATGGGTGACTATAAATGGACTTTTTTTTTCAATGAATGCCTTTTTTTT-CATGT
* * * * * * ** *
3611 TTCTCTAGATAGACATTAAATTAT-AGTCTATTTAAATGAAAAATATAAATAAATTTAACTTAAA
446 TTCTCGAGGTAGACATTCAATTATAACT-TGTTTTAACCAAAAATATAAAAAAATTTAACTTAAA
* *********** * *
3675 ATCAATTATGAGATTATAAAACCANNNNNNNNNNGTAATAAGGCTTTTGAACGAATAGGTGACTA
510 ATCAATTATGAGATTATAAAAACTTTAAAAGCGAGTAATAAGGCTTTTGAAGGAA-AGGAGACTA
* * * * * *
3740 TAAATGGACTTTTCTTGTCAATGAAAGCCTTTATCTTCATGTTTCTCGAGGTAGACATTCAATTA
574 TAAATGGACTTTTCTTG-CAATGAATGGCTTTTTCTACATGTTTCTAGAGGCAGACATTCAATTA
* * * * * *
3805 TAATCTGTTTTAACCCAAAATTTTAAAAAAATTTAACTT
638 TAGTCTGTTTTAA--TAAAAATCTAAATAAATTCAACTT
*
3844 AAAATCAATTT-TGAGATTATAAAACCTTTTAAAGTGAG
1 AAAATC-ATTTATGAGATTATAAAACCATTTAAAGTGAG
3882 NNNNNNNNNN
Statistics
Matches: 1165, Mismatches: 201, Indels: 84
0.80 0.14 0.06
Matches are distributed among these distances:
681 2 0.00
682 12 0.01
683 288 0.25
684 550 0.47
685 214 0.18
686 97 0.08
687 2 0.00
ACGTcount: A:0.40, C:0.11, G:0.13, T:0.35
Consensus pattern (674 bp):
AAAATCATTTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGACTTTTGAAGGAATAGGAGA
ATATAAATAGACATGTCTTCGCAATGAATTCCTTTCTCTACAAGTTTCTAAGACAGACATTCAAT
TATAATCTGTTTTAATAAAAATATAAAAAAATCAACTTAAAATCAATTTTGAGTTTATAAAATCA
TTTGAAACGAGTAATAAGGCTTTTGAAGAATGAGTAACTATAAATGGACTTTTTTCTCAATGAAT
GCCTTTTTCTACACGTTTCTCAAGGTAGACATTCAATTATAATCTATTTTACTAAAAAAATAAAA
AAATTCAACTTAAAATCAATTATGAGATTATAAAACATTTAAAGCCAGTAATAAGGCTTTTGAAG
GAATGGGTGACTATAAATGGACTTTTTTTTTCAATGAATGCCTTTTTTTTCATGTTTCTCGAGGT
AGACATTCAATTATAACTTGTTTTAACCAAAAATATAAAAAAATTTAACTTAAAATCAATTATGA
GATTATAAAAACTTTAAAAGCGAGTAATAAGGCTTTTGAAGGAAAGGAGACTATAAATGGACTTT
TCTTGCAATGAATGGCTTTTTCTACATGTTTCTAGAGGCAGACATTCAATTATAGTCTGTTTTAA
TAAAAATCTAAATAAATTCAACTT
Done.