Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399394.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2660.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3915
ACGTcount: A:0.36, C:0.14, G:0.15, T:0.34


Found at i:771 original size:18 final size:18

Alignment explanation


    Indices: 750--787  Score: 51
    Period size: 18  Copynumber: 2.1  Consensus size: 18

        740 TTAAAATCAG

                               
        750 AATA-ATTAAAAATATATA
          1 AATATATTAAAAAT-TATA

                 *            
        768 AATATGTTAAAAATTATA
          1 AATATATTAAAAATTATA

              
        786 AA
          1 AA

        788 CTAAAATTTT


Statistics
Matches: 18,  Mismatches: 1, Indels: 2
        0.86            0.05        0.10

Matches are distributed among these distances:
  18   10  0.56
  19    8  0.44

ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34


Consensus pattern (18 bp):   
AATATATTAAAAATTATA
Done.