Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399397.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2663.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 865

Length: 1443
ACGTcount: A:0.18, C:0.08, G:0.08, T:0.16

Warning! 729 characters in sequence are not A, C, G, or T


Found at i:882 original size:19 final size:18

Alignment explanation


    Indices: 842--889  Score: 60
    Period size: 18  Copynumber: 2.6  Consensus size: 18

        832 AATAATGGAA

                *            *
        842 AAAAGAATATTTTAAAAT
          1 AAAATAATATTTTAAAAC

                           *   
        860 AAAATAATATTTTATTAAC
          1 AAAATAATATTTTA-AAAC

                       
        879 AAAATAATATT
          1 AAAATAATATT

        890 AAAATATTAA


Statistics
Matches: 26,  Mismatches: 3, Indels: 1
        0.87            0.10        0.03

Matches are distributed among these distances:
  18   13  0.50
  19   13  0.50

ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38


Consensus pattern (18 bp):   
AAAATAATATTTTAAAAC
Done.