Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399410.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2677.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2367
ACGTcount: A:0.22, C:0.06, G:0.08, T:0.21

Warning! 993 characters in sequence are not A, C, G, or T


Found at i:1470 original size:171 final size:171

Alignment explanation


    Indices: 852--1474  Score: 758
    Period size: 170  Copynumber: 3.7  Consensus size: 171

        842 NNNNNNNAAC

                                 *                          *  *    **       
        852 CATTTAAAGCGAGTAATAAGGTTTTTGAAGGAATGGGTGACTATAAATGGAGTTTTCATGCCAAT
          1 CATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATAGACTTTTTTTGCCAAT

                        *  *         *  *    *                              *
        917 GAATG-CTTTTTTTTTATGTTTCTCAAGGTAAACATTCAATTATAGTCTGTTTTAACTAAAAATC
         66 GAATGTCTTTTTCTTCATGTTTCTCGAGATAAAAATTCAATTATAGTCTGTTTTAACTAAAAATG

                  *             *                    
        981 TAAAAATATTCAACTTAAAACCAATTATGAGATTATAAAA-
        131 TAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAAT

                       *                                                     
       1021 CTATTTAAAGCCAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATAGACTTTTTTTGCCAA
          1 C-ATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATAGACTTTTTTTGCCAA

                   *                 *        *               *              
       1086 TGAAT-TTTTTTTCTTCATGTTTCTTGAGATAAACATTCAATTATAGTCTATTTTAACTAAAAAT
         65 TGAATGTCTTTTTCTTCATGTTTCTCGAGATAAAAATTCAATTATAGTCTGTTTTAACTAAAAAT

                 *       *                            
       1150 GTAAACAAATTCATCTTAAAATCAATTATGAGATTATAAAAT
        130 GTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAAT

            *        *     *    *     *   *   *   * *       *                
       1192 AATTTAAAGAGAGTAGTAAGTCTTTTTAAGAAATTGGTCATTATAAATGGACTTTTTTT-CCGAA
          1 CATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATAGACTTTTTTTGCC-AA

                  *        *  *       *                                      
       1256 TGAATGGCTTTTTCTACACGTTTC-CTATTG-TAAGAAA-TCAATTATAGTCTGTTTTAA-TGAA
         65 TGAATGTCTTTTTCTTCATGTTTCTCGA--GATAA-AAATTCAATTATAGTCTGTTTTAACT-AA

                                                          
       1317 AAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAAT
        126 AAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAAT

                                     *         *      *    *            *    
       1363 CATTTAAAGCGAGTAATAAGGCTTTCGAAGGAATGAGTGACTGTAAACAGACTTTTTTTGTCAAT
          1 CATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATAGACTTTTTTTGCCAAT

                           **  *                           
       1428 GAATGTCTTTTTCTTTTTGCTTCTCGAGATAAAAATTCAATTATAGT
         66 GAATGTCTTTTTCTTCATGTTTCTCGAGATAAAAATTCAATTATAGT

       1475 ATAATAATAA


Statistics
Matches: 380,  Mismatches: 61, Indels: 24
        0.82            0.13        0.05

Matches are distributed among these distances:
 169    3  0.01
 170  210  0.55
 171  161  0.42
 172    6  0.02

ACGTcount: A:0.37, C:0.11, G:0.14, T:0.38


Consensus pattern (171 bp):   
CATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATAGACTTTTTTTGCCAAT
GAATGTCTTTTTCTTCATGTTTCTCGAGATAAAAATTCAATTATAGTCTGTTTTAACTAAAAATG
TAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAAT
Done.