Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399419.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2686.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1739
ACGTcount: A:0.26, C:0.09, G:0.11, T:0.26

Warning! 490 characters in sequence are not A, C, G, or T


Found at i:445 original size:172 final size:172

Alignment explanation


    Indices: 150--530  Score: 401
    Period size: 172  Copynumber: 2.2  Consensus size: 172

        140 NNNNNNNNNN

                             *                     *                         
        150 TGACATTCAATTATAATTTTTTTTAACCAAAAATGTACAGAGAATTCAAATTGCAATCAATTTTG
          1 TGACATTCAATTATAATCTTTTTTAACCAAAAATGTACAAAGAATTCAAATTGCAATCAATTTTG

                                            *         **********             
        215 AAATTACAAAACCATTTAAAGTGAGTATTAAGGCTTTTGAAGNNNNNNNNNNCTATAAATGGACT
         66 AAATTACAAAACCATTTAAAGTGAGTATTAAGACTTTTGAAGGAATGGGTGACTATAAATGGACT

                   *                               *      
        280 TTTCTTGTCAATG-AATACC-CTTTCTGT-CATATT-TCTTGACAT
        131 TTTCTTGCCAA-GAAATACCTCTTTCTGTGCAT-TTCTCATG--AT

                                       *                        *            
        322 TGACATTCAATTATAATCTTTTTTAACGAAAAATGTACAAAGAATTCAAATTTCAATCAATTTTG
          1 TGACATTCAATTATAATCTTTTTTAACCAAAAATGTACAAAGAATTCAAATTGCAATCAATTTTG

             *            **********                                         
        387 AGATTACAAAACCANNNNNNNNNNGTATTAAGACTTTTGAAGGAATGGGTGACTATAAATGGACT
         66 AAATTACAAAACCATTTAAAGTGAGTATTAAGACTTTTGAAGGAATGGGTGACTATAAATGGACT

                                *     *   *           
        452 TTTCTTGCCAAGAAATACCTTTTTCTTTGCGTTTCTCATGAT
        131 TTTCTTGCCAAGAAATACCTCTTTCTGTGCATTTCTCATGAT

                           *   *                 
        494 TGACATTCAATTATAGTCTGTTTTAACCAAAAATGTA
          1 TGACATTCAATTATAATCTTTTTTAACCAAAAATGTA

        531 AAAAACGTTA


Statistics
Matches: 171,  Mismatches: 34, Indels: 8
        0.80            0.16        0.04

Matches are distributed among these distances:
 171    1  0.01
 172  156  0.91
 173    8  0.05
 174    6  0.04

ACGTcount: A:0.34, C:0.13, G:0.12, T:0.36


Consensus pattern (172 bp):   
TGACATTCAATTATAATCTTTTTTAACCAAAAATGTACAAAGAATTCAAATTGCAATCAATTTTG
AAATTACAAAACCATTTAAAGTGAGTATTAAGACTTTTGAAGGAATGGGTGACTATAAATGGACT
TTTCTTGCCAAGAAATACCTCTTTCTGTGCATTTCTCATGAT
Done.