Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399422.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2689.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1727
ACGTcount: A:0.15, C:0.11, G:0.04, T:0.20

Warning! 864 characters in sequence are not A, C, G, or T


Found at i:1017 original size:15 final size:16

Alignment explanation


    Indices: 996--1060  Score: 58
    Period size: 20  Copynumber: 3.6  Consensus size: 16

        986 AAAATATTAA

                            
        996 TATTTAAATATTATTT
          1 TATTTAAATATTATTT

                               
       1012 TATTAATAAAATATTATTT
          1 TATT--T-AAATATTATTT

                                
       1031 TATTAAATAAAATATTATTT
          1 TATT---T-AAATATTATTT

                      
       1051 TATTTTAAAT
          1 TA-TTTAAAT

       1061 TTTTCAACTT


Statistics
Matches: 44,  Mismatches: 0, Indels: 9
        0.83            0.00        0.17

Matches are distributed among these distances:
  16    4  0.09
  17    4  0.09
  18    2  0.05
  19   15  0.34
  20   17  0.39
  21    2  0.05

ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55


Consensus pattern (16 bp):   
TATTTAAATATTATTT

Found at i:1025 original size:19 final size:20

Alignment explanation


    Indices: 1001--1054  Score: 101
    Period size: 20  Copynumber: 2.8  Consensus size: 20

        991 ATTAATATTT

                                
       1001 AAATATTATTTTATT-AATA
          1 AAATATTATTTTATTAAATA

                                
       1020 AAATATTATTTTATTAAATA
          1 AAATATTATTTTATTAAATA

                           
       1040 AAATATTATTTTATT
          1 AAATATTATTTTATT

       1055 TTAAATTTTT


Statistics
Matches: 34,  Mismatches: 0, Indels: 1
        0.97            0.00        0.03

Matches are distributed among these distances:
  19   15  0.44
  20   19  0.56

ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54


Consensus pattern (20 bp):   
AAATATTATTTTATTAAATA

Done.