Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399431.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2697.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5706
ACGTcount: A:0.19, C:0.09, G:0.10, T:0.18

Warning! 2486 characters in sequence are not A, C, G, or T


Found at i:3796 original size:35 final size:35

Alignment explanation


    Indices: 3726--3808  Score: 103
    Period size: 35  Copynumber: 2.4  Consensus size: 35

       3716 CCAAGCTTTT

                          *        ***         
       3726 ACAATGGCTTTTCACAGGCTCAGTGTCAACCTTCA
          1 ACAATGGCTTTTCAAAGGCTCAGCCACAACCTTCA

                                          *    
       3761 ACAATGGCTTTTCAAAGGCTCAGCCACAACGTTCA
          1 ACAATGGCTTTTCAAAGGCTCAGCCACAACCTTCA

                *  *     
       3796 ACAAGGGTTTTTC
          1 ACAATGGCTTTTC

       3809 CCAGGATCAA


Statistics
Matches: 41,  Mismatches: 7, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  35   41  1.00

ACGTcount: A:0.28, C:0.27, G:0.18, T:0.28


Consensus pattern (35 bp):   
ACAATGGCTTTTCAAAGGCTCAGCCACAACCTTCA
Done.