Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399438.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2702.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1822
ACGTcount: A:0.21, C:0.07, G:0.08, T:0.20

Warning! 796 characters in sequence are not A, C, G, or T


Found at i:1069 original size:171 final size:162

Alignment explanation


    Indices: 759--1075  Score: 327
    Period size: 171  Copynumber: 1.9  Consensus size: 162

        749 NNNAAACCGA

                                                             *               
        759 GTAATAAGGCTTTTGAAGGAATGGATGACTATAAATGAACTTTTCTTCTGAATGAATAAGCTTTT
          1 GTAATAAGGCTTTTGAAGGAATGGATGACTATAAATGAACTTTTCTTCTCAATGAATAAGCTTTT

                             *   ** * *            *                   *     
        824 TCTGCATGTTTCCCAAGGCAGGTATTTAATTAGAGTCGATTTTAACAAAAAATATAAAATAATTC
         66 TCTGCATGTTTCCCAAGACAGACAATCAATTAGAGTCGACTTTAACAAAAAATATAAAAAAATTC

                                                      
        889 AACTTAAAATCAATTANNNNNNNNNNAAACCATTAAAAGCGG
        131 AACTTAAAATCAATTA----------AAACCATTAAAAGCGG

                                              *                      *       
        931 GTAATAA-GCGTTTTGAAGGAAT-GAGTGACTATGAATGAACTTTTCTTCTCAATGAGT-AGCTT
          1 GTAATAAGGC-TTTTGAAGGAATGGA-TGACTATAAATGAACTTTTCTTCTCAATGAATAAGCTT

                          ** *  *             *                  *  *        
        993 TTTCTGCATGTTTCTTATGATAGACAATCAATTATAGTCTG-CTTTAACAAAACATTTAAAAAAA
         64 TTTCTGCATGTTTCCCAAGACAGACAATCAATTAGAGTC-GACTTTAACAAAAAATATAAAAAAA

                         *     
       1057 TTCAACTTAAAATTAATTA
        128 TTCAACTTAAAATCAATTA

       1076 TGAGATTATA


Statistics
Matches: 124,  Mismatches: 18, Indels: 7
        0.83            0.12        0.05

Matches are distributed among these distances:
 171   75  0.60
 172   49  0.40

ACGTcount: A:0.37, C:0.12, G:0.14, T:0.34


Consensus pattern (162 bp):   
GTAATAAGGCTTTTGAAGGAATGGATGACTATAAATGAACTTTTCTTCTCAATGAATAAGCTTTT
TCTGCATGTTTCCCAAGACAGACAATCAATTAGAGTCGACTTTAACAAAAAATATAAAAAAATTC
AACTTAAAATCAATTAAAACCATTAAAAGCGG
Done.