Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399446.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_271.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4466
ACGTcount: A:0.22, C:0.07, G:0.08, T:0.21

Warning! 1854 characters in sequence are not A, C, G, or T


Found at i:2730 original size:172 final size:168

Alignment explanation


    Indices: 2303--2810  Score: 465
    Period size: 171  Copynumber: 3.0  Consensus size: 168

       2293 NNNNNNNNTC

                  *        *                                      **  *      
       2303 TAAAAATATTCAACTTAAAA-CAAATTATGAGATTATAAAACT-ATTT-AA-AGCCT-CTAAGGC
          1 TAAAAAAATTCAACTGAAAATC-AATTATGAGATTATAAAA-TAATTTAAAGAGAGTAGTAAGGC

                   *                           *  *                     *    
       2363 -TTTGAATGAATGAGTGACTATAAATGGA-TTTTGTTTGCCAATGAATGCCTTTTTCTTCCTGTT
         64 TTTTGAAGGAATGAGT-ACTATAAATGGACTTTT-CTTCCCAATGAATGCCTTTTTC-TCATGTT

                       *       *        *       *      *
       2426 TCTCAAGATAAACATTCAAATATAGTCTATTTTAACCAAAAATG
        126 TCTCAAGATAAGCATTCAATTATAGTCTGTTTTAA-TAAAAATA

                  *    *   *          *                                      
       2470 TAAAAATATTCTACTTAAAATCAATTGTGAGATTATAAAATAATTTAAAGAGAGTAGTAAGGCTT
          1 TAAAAAAATTCAACTGAAAATCAATTATGAGATTATAAAATAATTTAAAGAGAGTAGTAAGGCTT

                       *  *         *                                        
       2535 TTGAAGGAATGGGTGCTTATAAATTGACTTTTCTTCCCAATGAATGCCTTTTTCTACATGTTTCT
         66 TTGAAGGAATGAGTAC-TATAAATGGACTTTTCTTCCCAATGAATGCCTTTTTCT-CATGTTTCT

                 *                    *              
       2600 CAAGACAAGCATTCAATTATAGTCTGGTTTAATGAAAAATA
        129 CAAGATAAGCATTCAATTATAGTCTGTTTTAAT-AAAAATA

                                                  *   *        *    *********
       2641 TAAAAAAAATTCAACTGAAAATCAATTATGAGATTATAGAATCATTTAAAGCGAGTNNNNNNNNN
          1 T-AAAAAAATTCAACTGAAAATCAATTATGAGATTATAAAATAATTTAAAGAGAGTAGTAAGGCT

            *                                    *         **       *        
       2706 NTTGAAGGAATGAGTAACTATAAATGGACTTTTCTTCTCAATGAATGGTTTTTTCTTATGTTTCA
         65 TTTGAAGGAATGAGT-ACTATAAATGGACTTTTCTTCCCAATGAATGCCTTTTTCTCATGTTTC-

              *  *                                   
       2771 T-GAGGTAAGCATTCAATTATAGTCTGTTTTAACTAAAAAT
        128 TCAAGATAAGCATTCAATTATAGTCTGTTTTAA-TAAAAAT

       2811 GTGAAANNNN


Statistics
Matches: 280,  Mismatches: 47, Indels: 24
        0.80            0.13        0.07

Matches are distributed among these distances:
 166    1  0.00
 167   40  0.14
 168    3  0.01
 169    3  0.01
 170    8  0.03
 171  124  0.44
 172  100  0.36
 173    1  0.00

ACGTcount: A:0.37, C:0.12, G:0.14, T:0.36


Consensus pattern (168 bp):   
TAAAAAAATTCAACTGAAAATCAATTATGAGATTATAAAATAATTTAAAGAGAGTAGTAAGGCTT
TTGAAGGAATGAGTACTATAAATGGACTTTTCTTCCCAATGAATGCCTTTTTCTCATGTTTCTCA
AGATAAGCATTCAATTATAGTCTGTTTTAATAAAAATA
Done.