Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399451.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2715.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1943
ACGTcount: A:0.25, C:0.08, G:0.10, T:0.24

Warning! 639 characters in sequence are not A, C, G, or T


Found at i:1941 original size:171 final size:171

Alignment explanation


    Indices: 1495--1943  Score: 510
    Period size: 171  Copynumber: 2.6  Consensus size: 171

       1485 NNNNNNNNNN

                                                   *             * *       * 
       1495 AACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAA-TGAGTGACTATAAATAAAATTTTCTTAC
          1 AACCATTTAAAGCGAGTAATAAGGCTTTTGAA-GAAGTGGGTGACTATAAATAGACTTTTCTTGC

                                                 * *             *       *   
       1559 CAATGAATGCCTTTTTCTTCATGTTTCTAGAGGTAGATAATCAATTATAGTCTGTTTTAACTAAA
         65 CAATGAATGCCTTTTTCTTCATGTTTCTAGAGGTAGACATTCAATTATAGTCTATTTTAACCAAA

                          *               * *    *    
       1624 AATTTTAAGAAATTTAACTTAAAATCAATTGTGAGATTATAA
        130 AATTTTAAGAAATTCAACTTAAAATCAATTATAAGATGATAA

               *            *     *           *     *     *                  
       1666 AACAATTTAAAGCGAGGAATAAAGCTTTTGAAG-GGATGGTTGACTGTAAATAGACTTTTCTTGC
          1 AACCATTTAAAGCGAGTAATAAGGCTTTTGAAGAAG-TGGGTGACTATAAATAGACTTTTCTTGC

                  *                *          *                              
       1730 CAATGATTGCCTTTTTCTTCATGGTTCTCA-AGGAAGACATTCAATTATAGTCTATTTTAACCAN
         65 CAATGAATGCCTTTTTCTTCATGTTTCT-AGAGGTAGACATTCAATTATAGTCTATTTTAACCA-

            *********                  *                
       1794 NNNNNNNNNA-AAATTCAACTTAAAATTAATTATAAGATGATAA
        128 AAAATTTTAAGAAATTCAACTTAAAATCAATTATAAGATGATAA

                        * *      *                   *                     * 
       1837 AACCATTTAAAGTGTGTAATATGGCTTTTGAAGAAGTGGGTAACTATAAATAGACTTTTCTTGTC
          1 AACCATTTAAAGCGAGTAATAAGGCTTTTGAAGAAGTGGGTGACTATAAATAGACTTTTCTTGCC

                                                      
       1902 AATGAATGCCTTTTTCTTCATGTTTCTAGAGGTAGACATTCA
         66 AATGAATGCCTTTTTCTTCATGTTTCTAGAGGTAGACATTCA


Statistics
Matches: 227,  Mismatches: 45, Indels: 12
        0.80            0.16        0.04

Matches are distributed among these distances:
 170    2  0.01
 171  222  0.98
 172    3  0.01

ACGTcount: A:0.35, C:0.12, G:0.15, T:0.36


Consensus pattern (171 bp):   
AACCATTTAAAGCGAGTAATAAGGCTTTTGAAGAAGTGGGTGACTATAAATAGACTTTTCTTGCC
AATGAATGCCTTTTTCTTCATGTTTCTAGAGGTAGACATTCAATTATAGTCTATTTTAACCAAAA
ATTTTAAGAAATTCAACTTAAAATCAATTATAAGATGATAA
Done.