Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018397275.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_34.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2955990
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 53928 characters in sequence are not A, C, G, or T
File 5 of 8
Found at i:1678813 original size:28 final size:28
Alignment explanation
Indices: 1678782--1678837 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
1678772 TATTTAAAAA
1678782 ATTTAAAATAAAATTTTAT-TCTTTTATT
1 ATTTAAAATAAAATTTTATAT-TTTTATT
* * *
1678810 ATTTCAATTAAATTTTTATATTTTTATT
1 ATTTAAAATAAAATTTTATATTTTTATT
1678838 TTATACTAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 23 0.96
29 1 0.04
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.61
Consensus pattern (28 bp):
ATTTAAAATAAAATTTTATATTTTTATT
Found at i:1689369 original size:21 final size:19
Alignment explanation
Indices: 1689340--1689382 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
1689330 TTAACATATT
1689340 TAATATTATTCAATTAAAATA
1 TAATATTATT--ATTAAAATA
* *
1689361 TAATTTTATTATTTAAATA
1 TAATATTATTATTAAAATA
1689380 TAA
1 TAA
1689383 AATAAATAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 11 0.55
21 9 0.45
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (19 bp):
TAATATTATTATTAAAATA
Found at i:1694477 original size:3 final size:3
Alignment explanation
Indices: 1694471--1694509 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
1694461 GTTGTTGTTG
1694471 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1694510 GCTTTTGTGT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:1701790 original size:74 final size:73
Alignment explanation
Indices: 1701712--1701909 Score: 234
Period size: 74 Copynumber: 2.7 Consensus size: 73
1701702 CAAACAGAAT
* * * * *
1701712 GCTCTTAGTTGACTAACCATATTTTTTAGTCGATTAAGTCTTCTTTGTCTTGTAGTTGAATTCTT
1 GCTCTTAGTTGACTAACCATATTTCTTAGTCGATTAAGT-TTCTTTGTCTTGTAATTGAAGTATC
* *
1701777 TGGTAATGA
65 TAGCAATGA
* * *
1701786 GCTCTTAGTTGACTAACTATACTTCTTAGTAGATTAAGTTCTCTTTGTCTTGTAATTGAAGTATC
1 GCTCTTAGTTGACTAACCATATTTCTTAGTCGATTAAGTT-TCTTTGTCTTGTAATTGAAGTATC
*
1701851 TAGCAGTGA
65 TAGCAATGA
* * * *
1701860 GTTCTTAGTTAACTAACCATGTTTCTTAGTCGATTAAGTTTTCTCTGTCT
1 GCTCTTAGTTGACTAACCATATTTCTTAGTCGATTAAG-TTTCTTTGTCT
1701910 CTGAACTAGT
Statistics
Matches: 104, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
73 1 0.01
74 101 0.97
75 2 0.02
ACGTcount: A:0.23, C:0.15, G:0.17, T:0.45
Consensus pattern (73 bp):
GCTCTTAGTTGACTAACCATATTTCTTAGTCGATTAAGTTTCTTTGTCTTGTAATTGAAGTATCT
AGCAATGA
Found at i:1703035 original size:17 final size:17
Alignment explanation
Indices: 1703015--1703047 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
1703005 TTCTTGATAA
1703015 AATAA-AACTCTTTATTG
1 AATAATAACT-TTTATTG
1703032 AATAATAACTTTTATT
1 AATAATAACTTTTATT
1703048 TTGTTATTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.42, C:0.09, G:0.03, T:0.45
Consensus pattern (17 bp):
AATAATAACTTTTATTG
Found at i:1706656 original size:2 final size:2
Alignment explanation
Indices: 1706649--1706694 Score: 83
Period size: 2 Copynumber: 22.5 Consensus size: 2
1706639 TATTTTTCAG
1706649 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TGA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA
1706692 TA T
1 TA T
1706695 GTGAAATGAG
Statistics
Matches: 43, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 41 0.95
3 2 0.05
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (2 bp):
TA
Found at i:1712392 original size:3 final size:3
Alignment explanation
Indices: 1712384--1712411 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
1712374 AATATCATTC
1712384 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1712412 GCCACGTTAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:1714461 original size:58 final size:58
Alignment explanation
Indices: 1714372--1714482 Score: 154
Period size: 58 Copynumber: 1.9 Consensus size: 58
1714362 CTTATCTTCA
* * * *
1714372 ATTAAGATAAAAATATTTTATCTTCTCTAAATTGAGA-AAATATGTTTTCTTGCCTAG
1 ATTAAGATAAAAATATTTTATCTTATCTAAATTAAGACAAACATATTTTCTTGCCTAG
1714429 ATTAAGATAAAAAATATTTT-TCTTATCTTAAATTAAGACAAACATATTTTCTTG
1 ATTAAGAT-AAAAATATTTTATCTTATC-TAAATTAAGACAAACATATTTTCTTG
1714483 TCTAAATTGA
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
57 14 0.30
58 20 0.43
59 13 0.28
ACGTcount: A:0.40, C:0.10, G:0.08, T:0.42
Consensus pattern (58 bp):
ATTAAGATAAAAATATTTTATCTTATCTAAATTAAGACAAACATATTTTCTTGCCTAG
Found at i:1719177 original size:12 final size:13
Alignment explanation
Indices: 1719158--1719218 Score: 85
Period size: 12 Copynumber: 4.9 Consensus size: 13
1719148 CAGAATAGTT
1719158 TCTTGCTGCCTCC
1 TCTTGCTGCCTCC
1719171 T-TTGCTGCCT-C
1 TCTTGCTGCCTCC
1719182 TCTTGCTGCCT-C
1 TCTTGCTGCCTCC
1719194 TCTTTGCTGCCT-C
1 TC-TTGCTGCCTCC
1719207 TCTTGCTGCCTC
1 TCTTGCTGCCTC
1719219 AAAAATCTCT
Statistics
Matches: 45, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
11 2 0.04
12 30 0.67
13 13 0.29
ACGTcount: A:0.00, C:0.41, G:0.16, T:0.43
Consensus pattern (13 bp):
TCTTGCTGCCTCC
Found at i:1719204 original size:25 final size:24
Alignment explanation
Indices: 1719158--1719218 Score: 113
Period size: 25 Copynumber: 2.5 Consensus size: 24
1719148 CAGAATAGTT
1719158 TCTTGCTGCCTCCTTTGCTGCCTC
1 TCTTGCTGCCTCCTTTGCTGCCTC
1719182 TCTTGCTGCCTCTCTTTGCTGCCTC
1 TCTTGCTGCCTC-CTTTGCTGCCTC
1719207 TCTTGCTGCCTC
1 TCTTGCTGCCTC
1719219 AAAAATCTCT
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
24 12 0.33
25 24 0.67
ACGTcount: A:0.00, C:0.41, G:0.16, T:0.43
Consensus pattern (24 bp):
TCTTGCTGCCTCCTTTGCTGCCTC
Found at i:1720386 original size:3 final size:3
Alignment explanation
Indices: 1720378--1720407 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
1720368 ATTCACATCG
1720378 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1720408 TAAGCAACAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:1728641 original size:33 final size:32
Alignment explanation
Indices: 1728602--1728712 Score: 82
Period size: 33 Copynumber: 3.2 Consensus size: 32
1728592 TTTGTGGTGG
1728602 ATTAGTTTTTTAGGATTGTGGTGGATTTCAAC
1 ATTAGTTTTTTAGGATTGTGGTGGATTTCAAC
* **
1728634 ATGTAGTTTGAATATTAGGATTGTGGCGGATGAGCTAA-
1 AT-TAGTTT---T-TTAGGATTGTGGTGGAT-TTC-AAC
* *
1728672 ATTA-TCATTTTAGAATTGTGGTGGATTTCAAC
1 ATTAGT-TTTTTAGGATTGTGGTGGATTTCAAC
1728704 ATATAGTTT
1 AT-TAGTTT
1728713 GAATATTAGT
Statistics
Matches: 59, Mismatches: 9, Indels: 21
0.66 0.10 0.24
Matches are distributed among these distances:
31 2 0.03
32 5 0.08
33 24 0.41
34 2 0.03
36 2 0.03
37 19 0.32
38 3 0.05
39 2 0.03
ACGTcount: A:0.27, C:0.06, G:0.24, T:0.42
Consensus pattern (32 bp):
ATTAGTTTTTTAGGATTGTGGTGGATTTCAAC
Found at i:1728653 original size:37 final size:36
Alignment explanation
Indices: 1728611--1728721 Score: 97
Period size: 37 Copynumber: 3.1 Consensus size: 36
1728601 GATTAGTTTT
1728611 TTAGGATTGTGGTGGATTTCAACATGTAGTTTGAATA
1 TTAGGATTGTGGTGGATTTCAACAT-TAGTTTGAATA
* ** * *
1728648 TTAGGATTGTGGCGGATGAGCTAA-ATTA---T-CATT
1 TTAGGATTGTGGTGGAT-TTC-AACATTAGTTTGAATA
*
1728681 TTAGAATTGTGGTGGATTTCAACATATAGTTTGAATA
1 TTAGGATTGTGGTGGATTTCAACAT-TAGTTTGAATA
1728718 TTAG
1 TTAG
1728722 TTTTTTTTTT
Statistics
Matches: 55, Mismatches: 11, Indels: 16
0.67 0.13 0.20
Matches are distributed among these distances:
31 2 0.04
32 3 0.05
33 19 0.35
34 1 0.02
36 1 0.02
37 24 0.44
38 3 0.05
39 2 0.04
ACGTcount: A:0.29, C:0.06, G:0.25, T:0.40
Consensus pattern (36 bp):
TTAGGATTGTGGTGGATTTCAACATTAGTTTGAATA
Found at i:1729742 original size:20 final size:20
Alignment explanation
Indices: 1729713--1729752 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
1729703 TGAGTGTAAG
1729713 ATTTTTTCTTTTC-TCTTTT
1 ATTTTTTCTTTTCTTCTTTT
1729732 ATTTCTTTCTTTTCTTCTTTT
1 ATTT-TTTCTTTTCTTCTTTT
1729753 TCTTTTTCCT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 4 0.21
20 9 0.47
21 6 0.32
ACGTcount: A:0.05, C:0.17, G:0.00, T:0.78
Consensus pattern (20 bp):
ATTTTTTCTTTTCTTCTTTT
Found at i:1735869 original size:22 final size:22
Alignment explanation
Indices: 1735844--1735975 Score: 97
Period size: 22 Copynumber: 6.1 Consensus size: 22
1735834 GCGTAGTCAA
* *
1735844 TTTTTGAGTATTGTGTGACTAG
1 TTTTTAAGTATTGCGTGACTAG
* *
1735866 TTTTTAAGCATTGTGTGACT-G
1 TTTTTAAGTATTGCGTGACTAG
** ** * * *
1735887 ACTTTGGGTATTACATGACTAA
1 TTTTTAAGTATTGCGTGACTAG
*
1735909 TTTTTAAGTATTGTGTGACT-G
1 TTTTTAAGTATTGCGTGACTAG
** * *
1735930 ACTTTAAGCATTGCATGACTAG
1 TTTTTAAGTATTGCGTGACTAG
*
1735952 TTTTTAAGAATTGCGTGACTAG
1 TTTTTAAGTATTGCGTGACTAG
1735974 TT
1 TT
1735976 GATATGGCAT
Statistics
Matches: 80, Mismatches: 28, Indels: 4
0.71 0.25 0.04
Matches are distributed among these distances:
21 28 0.35
22 52 0.65
ACGTcount: A:0.24, C:0.10, G:0.22, T:0.44
Consensus pattern (22 bp):
TTTTTAAGTATTGCGTGACTAG
Found at i:1735913 original size:43 final size:43
Alignment explanation
Indices: 1735859--1735971 Score: 154
Period size: 43 Copynumber: 2.6 Consensus size: 43
1735849 GAGTATTGTG
* ** *
1735859 TGACTAGTTTTTAAGCATTGTGTGACTGACTTTGGGTATTACA
1 TGACTAGTTTTTAAGAATTGTGTGACTGACTTTAAGCATTACA
* * *
1735902 TGACTAATTTTTAAGTATTGTGTGACTGACTTTAAGCATTGCA
1 TGACTAGTTTTTAAGAATTGTGTGACTGACTTTAAGCATTACA
*
1735945 TGACTAGTTTTTAAGAATTGCGTGACT
1 TGACTAGTTTTTAAGAATTGTGTGACT
1735972 AGTTGATATG
Statistics
Matches: 61, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 61 1.00
ACGTcount: A:0.26, C:0.12, G:0.21, T:0.42
Consensus pattern (43 bp):
TGACTAGTTTTTAAGAATTGTGTGACTGACTTTAAGCATTACA
Found at i:1735948 original size:21 final size:21
Alignment explanation
Indices: 1735868--1735949 Score: 56
Period size: 21 Copynumber: 3.9 Consensus size: 21
1735858 GTGACTAGTT
**
1735868 TTTAAGCATTGTGTGACTGAC
1 TTTAAGCATTGCATGACTGAC
** * * * *
1735889 TTTGGGTATTACATGACTAATT
1 TTTAAGCATTGCATGACTGA-C
* **
1735911 TTTAAGTATTGTGTGACTGAC
1 TTTAAGCATTGCATGACTGAC
1735932 TTTAAGCATTGCATGACT
1 TTTAAGCATTGCATGACT
1735950 AGTTTTTAAG
Statistics
Matches: 42, Mismatches: 18, Indels: 2
0.68 0.29 0.03
Matches are distributed among these distances:
21 28 0.67
22 14 0.33
ACGTcount: A:0.26, C:0.12, G:0.21, T:0.41
Consensus pattern (21 bp):
TTTAAGCATTGCATGACTGAC
Found at i:1736084 original size:22 final size:21
Alignment explanation
Indices: 1736054--1736112 Score: 73
Period size: 22 Copynumber: 2.8 Consensus size: 21
1736044 GCATTGCTTA
* *
1736054 AAAATCAATCACGTAATATCT
1 AAAACCAATCACGTAATACCT
*
1736075 AAAAGCCAATCACGCAATACCT
1 AAAA-CCAATCACGTAATACCT
*
1736097 AAAACCAATCATGTAA
1 AAAACCAATCACGTAA
1736113 AGCTTAAAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
21 14 0.44
22 18 0.56
ACGTcount: A:0.49, C:0.24, G:0.07, T:0.20
Consensus pattern (21 bp):
AAAACCAATCACGTAATACCT
Found at i:1737591 original size:21 final size:22
Alignment explanation
Indices: 1737566--1737609 Score: 72
Period size: 21 Copynumber: 2.0 Consensus size: 22
1737556 AAGTGATTAA
1737566 TTTAAGTTATTTTAGTT-AAAT
1 TTTAAGTTATTTTAGTTGAAAT
*
1737587 TTTAAGTTATTTTATTTGAAAT
1 TTTAAGTTATTTTAGTTGAAAT
1737609 T
1 T
1737610 ACTTTAAGAG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 16 0.76
22 5 0.24
ACGTcount: A:0.32, C:0.00, G:0.09, T:0.59
Consensus pattern (22 bp):
TTTAAGTTATTTTAGTTGAAAT
Found at i:1755893 original size:15 final size:15
Alignment explanation
Indices: 1755873--1755926 Score: 90
Period size: 15 Copynumber: 3.6 Consensus size: 15
1755863 TTTACAATGC
1755873 AATGTGATTACAGGT
1 AATGTGATTACAGGT
1755888 AATGTGATTACAGGT
1 AATGTGATTACAGGT
**
1755903 AATGTGATTACAAAT
1 AATGTGATTACAGGT
1755918 AATGTGATT
1 AATGTGATT
1755927 GCAGAGAAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 37 1.00
ACGTcount: A:0.37, C:0.06, G:0.22, T:0.35
Consensus pattern (15 bp):
AATGTGATTACAGGT
Found at i:1756154 original size:38 final size:38
Alignment explanation
Indices: 1756111--1756222 Score: 163
Period size: 37 Copynumber: 2.9 Consensus size: 38
1756101 TCATCTCTTA
* * * *
1756111 AATATATTTTTAATGTCATATATTTTATTTTTATTTTT
1 AATATATTTTTTATATTATATATTTTATTTTAATTTTT
*
1756149 AATATATTTTTTTATATTATATATTTTATTTTCA-TTTT
1 AATATA-TTTTTTATATTATATATTTTATTTTAATTTTT
1756187 AATATATTTTTTATATTATATATTTTATTTTAATTT
1 AATATATTTTTTATATTATATATTTTATTTTAATTT
1756223 CTTTTACTTA
Statistics
Matches: 67, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
37 26 0.39
38 18 0.27
39 23 0.34
ACGTcount: A:0.30, C:0.02, G:0.01, T:0.67
Consensus pattern (38 bp):
AATATATTTTTTATATTATATATTTTATTTTAATTTTT
Found at i:1756158 original size:17 final size:16
Alignment explanation
Indices: 1756136--1756311 Score: 50
Period size: 15 Copynumber: 10.8 Consensus size: 16
1756126 TCATATATTT
1756136 TATTTTTATTTTTAATA
1 TATTTTTATTTTT-ATA
1756153 TATTTTT-TTATATTATA
1 TATTTTTATT-T-TTATA
*
1756170 TATTTTATTTTCATTTTAATA
1 TA---T-TTTT-ATTTTTATA
*
1756191 TATTTTT-TATATTATA
1 TATTTTTAT-TTTTATA
1756207 TA-TTTTA-TTTTA-A
1 TATTTTTATTTTTATA
*
1756220 TTTCTTTTACTTATATTATA
1 TAT-TTTTA-TT-T-TTATA
* * *
1756240 CAAATTTTAATTTT-TA
1 -TATTTTTATTTTTATA
* *
1756256 TA-TTATA-TTATATTA
1 TATTTTTATTTTTA-TA
*
1756271 TATTTTTA-TATTATA
1 TATTTTTATTTTTATA
*
1756286 TA-TTTTATTTTAATA
1 TATTTTTATTTTTATA
1756301 -ATTTTTATTTT
1 TATTTTTATTTT
1756312 AATTATAACA
Statistics
Matches: 119, Mismatches: 17, Indels: 48
0.65 0.09 0.26
Matches are distributed among these distances:
13 5 0.04
14 14 0.12
15 33 0.28
16 18 0.15
17 20 0.17
18 5 0.04
19 4 0.03
20 7 0.06
21 10 0.08
22 1 0.01
23 2 0.02
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (16 bp):
TATTTTTATTTTTATA
Found at i:1756162 original size:19 final size:19
Alignment explanation
Indices: 1756138--1756203 Score: 66
Period size: 21 Copynumber: 3.4 Consensus size: 19
1756128 ATATATTTTA
1756138 TTTTTATTTTTAATATATT
1 TTTTTATTTTTAATATATT
*
1756157 TTTTTA-TATT-ATATATT
1 TTTTTATTTTTAATATATT
1756174 TTATTT-TCATTTTAATATATT
1 TT-TTTAT--TTTTAATATATT
1756195 TTTTATATT
1 TTTT-TATT
1756204 ATATATTTTA
Statistics
Matches: 38, Mismatches: 2, Indels: 13
0.72 0.04 0.25
Matches are distributed among these distances:
17 9 0.24
18 6 0.16
19 6 0.16
20 6 0.16
21 10 0.26
22 1 0.03
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (19 bp):
TTTTTATTTTTAATATATT
Found at i:1756260 original size:23 final size:23
Alignment explanation
Indices: 1756230--1756285 Score: 69
Period size: 23 Copynumber: 2.4 Consensus size: 23
1756220 TTTCTTTTAC
*
1756230 TTATATTATACAAATTTTA-ATTT
1 TTATATTATA-AAATATTATATTT
**
1756253 TTATATTATATTATATTATATTT
1 TTATATTATAAAATATTATATTT
1756276 TTATATTATA
1 TTATATTATA
1756286 TATTTTATTT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
22 5 0.17
23 24 0.83
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.61
Consensus pattern (23 bp):
TTATATTATAAAATATTATATTT
Found at i:1756263 original size:5 final size:5
Alignment explanation
Indices: 1756253--1756286 Score: 54
Period size: 5 Copynumber: 7.2 Consensus size: 5
1756243 ATTTTAATTT
1756253 TTATA TTATA TTATA TTATA TT-T- TTATA TTATA T
1 TTATA TTATA TTATA TTATA TTATA TTATA TTATA T
1756287 ATTTTATTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
3 2 0.07
4 2 0.07
5 23 0.85
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (5 bp):
TTATA
Found at i:1756304 original size:14 final size:16
Alignment explanation
Indices: 1756269--1756314 Score: 62
Period size: 15 Copynumber: 3.1 Consensus size: 16
1756259 TATATTATAT
*
1756269 TATATTTTTATATT-A
1 TATATTTTTATTTTAA
1756284 TATA-TTTTATTTTAA
1 TATATTTTTATTTTAA
1756299 TA-ATTTTTATTTTAA
1 TATATTTTTATTTTAA
1756314 T
1 T
1756315 TATAACATTA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
14 9 0.32
15 19 0.68
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (16 bp):
TATATTTTTATTTTAA
Found at i:1758869 original size:18 final size:19
Alignment explanation
Indices: 1758831--1758870 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
1758821 AGATTAAATC
*
1758831 GGAGAATGTAGTGGCGGAT
1 GGAGAATGTAGTGGAGGAT
*
1758850 GGAGAGTGTAGT-GAGGAT
1 GGAGAATGTAGTGGAGGAT
1758868 GGA
1 GGA
1758871 CATTGGACCA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 8 0.42
19 11 0.58
ACGTcount: A:0.28, C:0.03, G:0.50, T:0.20
Consensus pattern (19 bp):
GGAGAATGTAGTGGAGGAT
Found at i:1772352 original size:33 final size:29
Alignment explanation
Indices: 1772271--1772363 Score: 107
Period size: 29 Copynumber: 3.1 Consensus size: 29
1772261 AATCGGAGAG
*
1772271 AATAATGAAAGAGAGAAAGAGAAGAAAAA
1 AATAATGAAAGAGAGAAACAGAAGAAAAA
* *
1772300 AATAATGAAAGGGAAAAACAGAAGAAAGGAA
1 AATAATGAAAGAGAGAAACAGAAGAAA--AA
1772331 AGA-AGATCGAAAGAGAGAAACAGAAGAAAAA
1 A-ATA-AT-GAAAGAGAGAAACAGAAGAAAAA
1772362 AA
1 AA
1772364 AAGGAGAAAA
Statistics
Matches: 54, Mismatches: 5, Indels: 9
0.79 0.07 0.13
Matches are distributed among these distances:
29 24 0.44
30 1 0.02
31 7 0.13
32 3 0.06
33 19 0.35
ACGTcount: A:0.67, C:0.03, G:0.25, T:0.05
Consensus pattern (29 bp):
AATAATGAAAGAGAGAAACAGAAGAAAAA
Found at i:1772582 original size:19 final size:20
Alignment explanation
Indices: 1772558--1772607 Score: 59
Period size: 19 Copynumber: 2.6 Consensus size: 20
1772548 TTAATCAATT
*
1772558 TTAATTTAATAAGAA-ACAA
1 TTAATTTAATAACAACACAA
* *
1772577 TTAA-TTAATGACAACATAA
1 TTAATTTAATAACAACACAA
1772596 TTAATTTAATAA
1 TTAATTTAATAA
1772608 ATTTTAAGGT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
18 8 0.32
19 11 0.44
20 6 0.24
ACGTcount: A:0.54, C:0.06, G:0.04, T:0.36
Consensus pattern (20 bp):
TTAATTTAATAACAACACAA
Found at i:1780682 original size:3 final size:3
Alignment explanation
Indices: 1780676--1780700 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
1780666 AACACATTAT
1780676 TAG TAG TAG TAG TAG TAG TAG TAG T
1 TAG TAG TAG TAG TAG TAG TAG TAG T
1780701 GACAATGATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.32, T:0.36
Consensus pattern (3 bp):
TAG
Found at i:1783493 original size:16 final size:18
Alignment explanation
Indices: 1783474--1783509 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
1783464 CCTAAACCTA
1783474 ATCC-AATCTA-ATATAC
1 ATCCAAATCTAGATATAC
1783490 ATCCAAATCTAGATATAC
1 ATCCAAATCTAGATATAC
1783508 AT
1 AT
1783510 AATCAAATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 4 0.22
17 6 0.33
18 8 0.44
ACGTcount: A:0.44, C:0.22, G:0.03, T:0.31
Consensus pattern (18 bp):
ATCCAAATCTAGATATAC
Found at i:1790756 original size:67 final size:69
Alignment explanation
Indices: 1790663--1790810 Score: 192
Period size: 69 Copynumber: 2.2 Consensus size: 69
1790653 CTAAGCTTTA
* ** ** *
1790663 GAAAAGCTAGTTTTGGGTTTTGGTTGATCTTG-GGAAAAACT-ATTGTTAAAGGTTATGGCTGAG
1 GAAAAGCCA-TTTTGGGTTTTGGTTGATCCCGTAAAAAAAATCATTGTTAAAGGTTATGGCTGAG
1790726 CCTAT
65 CCTAT
1790731 GAAAAGCCATTTTGGGTTTTGGTTGATCCCGTAAAAAAAATCATTGTTAAAGGTTATGGCTGAGC
1 GAAAAGCCATTTTGGGTTTTGGTTGATCCCGTAAAAAAAATCATTGTTAAAGGTTATGGCTGAGC
* *
1790796 TTGT
66 CTAT
*
1790800 GAAAAGTCATT
1 GAAAAGCCATT
1790811 GTAAAAACTT
Statistics
Matches: 69, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
67 20 0.29
68 14 0.20
69 35 0.51
ACGTcount: A:0.29, C:0.10, G:0.26, T:0.35
Consensus pattern (69 bp):
GAAAAGCCATTTTGGGTTTTGGTTGATCCCGTAAAAAAAATCATTGTTAAAGGTTATGGCTGAGC
CTAT
Found at i:1791165 original size:2 final size:2
Alignment explanation
Indices: 1791158--1791182 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
1791148 ATAAAATAAG
1791158 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
1791183 GTAAGAATCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:1791693 original size:21 final size:22
Alignment explanation
Indices: 1791664--1791707 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
1791654 GAATAGCTAA
1791664 TTTAAGTTATTTTA-GTTAAAT
1 TTTAAGTTATTTTATGTTAAAT
* *
1791685 TTTATGTTATTTTATTTTAAAT
1 TTTAAGTTATTTTATGTTAAAT
1791707 T
1 T
1791708 ACTCTAAGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 13 0.65
22 7 0.35
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.64
Consensus pattern (22 bp):
TTTAAGTTATTTTATGTTAAAT
Found at i:1793451 original size:27 final size:27
Alignment explanation
Indices: 1793420--1793538 Score: 82
Period size: 27 Copynumber: 4.4 Consensus size: 27
1793410 ATCTCTTCCT
*
1793420 TATTCATCCACTCCTATTGATTAAGAC
1 TATTCATCCACTCCTAATGATTAAGAC
* ** *
1793447 TATTCATTCACTTTTAATGGTT-AGAAGC
1 TATTCATCCACTCCTAATGATTAAG-A-C
* *
1793475 -ATTCATCCACTCCTAGTGAGTTAAGAG
1 TATTCATCCACTCCTAATGA-TTAAGAC
* * * *
1793502 TATTCAACCACTTCTAATGGTTTAA-AG
1 TATTCATCCACTCCTAAT-GATTAAGAC
1793529 TATTCATCCA
1 TATTCATCCA
1793539 TTTGTTACAA
Statistics
Matches: 70, Mismatches: 16, Indels: 12
0.71 0.16 0.12
Matches are distributed among these distances:
26 2 0.03
27 43 0.61
28 22 0.31
29 3 0.04
ACGTcount: A:0.30, C:0.21, G:0.12, T:0.37
Consensus pattern (27 bp):
TATTCATCCACTCCTAATGATTAAGAC
Found at i:1793514 original size:55 final size:54
Alignment explanation
Indices: 1793421--1793538 Score: 157
Period size: 55 Copynumber: 2.2 Consensus size: 54
1793411 TCTCTTCCTT
* ** *
1793421 ATTCATCCACTCCTATTGATTAAGACTATTCATTCACTTTTAATGG-TTAGAAGC
1 ATTCATCCACTCCTAGTGATTAAGACTATTCAACCACTTCTAATGGTTTA-AAGC
* *
1793475 ATTCATCCACTCCTAGTGAGTTAAGAGTATTCAACCACTTCTAATGGTTTAAAGT
1 ATTCATCCACTCCTAGTGA-TTAAGACTATTCAACCACTTCTAATGGTTTAAAGC
1793530 ATTCATCCA
1 ATTCATCCA
1793539 TTTGTTACAA
Statistics
Matches: 56, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
54 18 0.32
55 35 0.62
56 3 0.05
ACGTcount: A:0.31, C:0.21, G:0.12, T:0.36
Consensus pattern (54 bp):
ATTCATCCACTCCTAGTGATTAAGACTATTCAACCACTTCTAATGGTTTAAAGC
Found at i:1800788 original size:24 final size:22
Alignment explanation
Indices: 1800760--1800821 Score: 72
Period size: 21 Copynumber: 2.8 Consensus size: 22
1800750 TACATTTTAG
* *
1800760 AATGTATTGATAGATTTGGTCGA
1 AATGTATTGATACATTT-GTCCA
*
1800783 AGATGTATCGATACA-TTGTCCA
1 A-ATGTATTGATACATTTGTCCA
1800805 AATGTATTGATACATTT
1 AATGTATTGATACATTT
1800822 AAAGTAGAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
21 12 0.36
22 7 0.21
23 3 0.09
24 11 0.33
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (22 bp):
AATGTATTGATACATTTGTCCA
Found at i:1800954 original size:22 final size:21
Alignment explanation
Indices: 1800929--1800977 Score: 55
Period size: 20 Copynumber: 2.3 Consensus size: 21
1800919 CATTCATTCA
*
1800929 AAATTAGGGCAAATTTATCGAT
1 AAATTAGGGC-AATATATCGAT
*
1800951 AAATT-TGGCAATATATCGAT
1 AAATTAGGGCAATATATCGAT
*
1800971 ACATTAG
1 AAATTAG
1800978 ATAGGAAAGA
Statistics
Matches: 22, Mismatches: 4, Indels: 3
0.76 0.14 0.10
Matches are distributed among these distances:
20 14 0.64
21 3 0.14
22 5 0.23
ACGTcount: A:0.41, C:0.10, G:0.16, T:0.33
Consensus pattern (21 bp):
AAATTAGGGCAATATATCGAT
Found at i:1802556 original size:34 final size:32
Alignment explanation
Indices: 1802518--1802584 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 32
1802508 TGAAGATCTG
* *
1802518 TGGAGACATTAAGGATGATGATATGCCCTTATAT
1 TGGAGA-ATTAAAGATAATGATATGCCC-TATAT
*
1802552 TGGAGATTTAAAGATAATGATATGCCCTATAT
1 TGGAGAATTAAAGATAATGATATGCCCTATAT
1802584 T
1 T
1802585 TTGAGATCTT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
32 6 0.20
33 18 0.60
34 6 0.20
ACGTcount: A:0.34, C:0.10, G:0.21, T:0.34
Consensus pattern (32 bp):
TGGAGAATTAAAGATAATGATATGCCCTATAT
Found at i:1817144 original size:179 final size:179
Alignment explanation
Indices: 1816829--1817177 Score: 576
Period size: 179 Copynumber: 1.9 Consensus size: 179
1816819 TAACACCTTA
1816829 ATTTTATCCAAACAACTAAGAATTAAATTAAAAAGAAAAAATAATTTTAACAAACTAAAGACTAA
1 ATTTTATCCAAACAACTAAGAATTAAATTAAAAAGAAAAAATAATTTTAACAAACTAAAGACTAA
*
1816894 AACTAATCCAAATTAACTAGAAAAATTATTTTATTAAATCTGATTGACTTTTAGACTTAAGATTC
66 AACTAATCCAAATTAACTAGAAAAATTATTTTATTAAATCTGATCGACTTTTAGACTTAAGATTC
1816959 TGAAAAGCTCAGTCCAAATCTCCTACTAAAGTGACCACCCCTAGCACTG
131 TGAAAAGCTCAGTCCAAATCTCCTACTAAAGTGACCACCCCTAGCACTG
* * * *
1817008 ATTTTGTCCAAACAACTAAGAATTAAGTTAAAAAGAGAAATTAATTTTAACAAACTAAAGACTAA
1 ATTTTATCCAAACAACTAAGAATTAAATTAAAAAGAAAAAATAATTTTAACAAACTAAAGACTAA
* * *
1817073 AACTAATCTAAATTAACTAGCAAAATTATTTTATTAAAT-TCGATCGACTTTTAAGCCTT-AGAT
66 AACTAATCCAAATTAACTAGAAAAATTATTTTATTAAATCT-GATCGACTTTT-AGACTTAAGAT
* *
1817136 TTTGAAAAGCTCAGTCCAAATCTCCTAGTAAAGTGACCACCC
129 TCTGAAAAGCTCAGTCCAAATCTCCTACTAAAGTGACCACCC
1817178 ATGGAACTAA
Statistics
Matches: 158, Mismatches: 10, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
178 1 0.01
179 152 0.96
180 5 0.03
ACGTcount: A:0.44, C:0.17, G:0.09, T:0.30
Consensus pattern (179 bp):
ATTTTATCCAAACAACTAAGAATTAAATTAAAAAGAAAAAATAATTTTAACAAACTAAAGACTAA
AACTAATCCAAATTAACTAGAAAAATTATTTTATTAAATCTGATCGACTTTTAGACTTAAGATTC
TGAAAAGCTCAGTCCAAATCTCCTACTAAAGTGACCACCCCTAGCACTG
Found at i:1827672 original size:76 final size:76
Alignment explanation
Indices: 1827490--1827664 Score: 262
Period size: 76 Copynumber: 2.3 Consensus size: 76
1827480 AAATGCCATC
* * * *
1827490 TATTTTAATTTTGGGTAATTCATAAAAAAAGGAAATTGTTTCCCATTTTAAAAGTAATTCCTATA
1 TATTTTAATTTTGGGTAATTCATAAAAATAGGAAATTGTTTCCCACTTTAAAAGAAATTCCTAAA
1827555 ATTAAGGATAG
66 ATTAAGGATAG
* * * *
1827566 AATTTTAATTTTGGGTGATTCATAAAAATAGGAAATTGTTTCCTACTTTAAAAGAAATTTCTAAA
1 TATTTTAATTTTGGGTAATTCATAAAAATAGGAAATTGTTTCCCACTTTAAAAGAAATTCCTAAA
1827631 ATTAAGGATAG
66 ATTAAGGATAG
*
1827642 TATTTTAA-TTTGGGAAATTCATA
1 TATTTTAATTTTGGGTAATTCATA
1827665 GCCAATAGTT
Statistics
Matches: 88, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
75 13 0.15
76 75 0.85
ACGTcount: A:0.39, C:0.07, G:0.14, T:0.40
Consensus pattern (76 bp):
TATTTTAATTTTGGGTAATTCATAAAAATAGGAAATTGTTTCCCACTTTAAAAGAAATTCCTAAA
ATTAAGGATAG
Found at i:1841276 original size:17 final size:17
Alignment explanation
Indices: 1841250--1841293 Score: 72
Period size: 17 Copynumber: 2.6 Consensus size: 17
1841240 AAAACTAATT
1841250 CATA-GTAGTATATTTA
1 CATACGTAGTATATTTA
1841266 CATACGTAGTATATTTA
1 CATACGTAGTATATTTA
*
1841283 CATACATAGTA
1 CATACGTAGTA
1841294 GATTCGCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
16 4 0.15
17 22 0.85
ACGTcount: A:0.39, C:0.11, G:0.11, T:0.39
Consensus pattern (17 bp):
CATACGTAGTATATTTA
Found at i:1843843 original size:6 final size:6
Alignment explanation
Indices: 1843834--1843873 Score: 64
Period size: 6 Copynumber: 6.8 Consensus size: 6
1843824 TTTAATGATA
*
1843834 ATTTAT ATTTAT ATTTGT ATTTAT A-TTAT ATTTAT ATTTA
1 ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTA
1843874 ATAGATTCAT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
5 5 0.16
6 26 0.84
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.65
Consensus pattern (6 bp):
ATTTAT
Found at i:1845644 original size:20 final size:20
Alignment explanation
Indices: 1845588--1845636 Score: 98
Period size: 20 Copynumber: 2.5 Consensus size: 20
1845578 AAATTAGGGC
1845588 AAATGTATCAATACATTGCA
1 AAATGTATCAATACATTGCA
1845608 AAATGTATCAATACATTGCA
1 AAATGTATCAATACATTGCA
1845628 AAATGTATC
1 AAATGTATC
1845637 GATCCATTAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.45, C:0.14, G:0.10, T:0.31
Consensus pattern (20 bp):
AAATGTATCAATACATTGCA
Found at i:1853791 original size:14 final size:14
Alignment explanation
Indices: 1853772--1853813 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
1853762 GAAAGCAAAA
1853772 AGAAAGAAGGAAAG
1 AGAAAGAAGGAAAG
*
1853786 AGAAAGGAGAGAAA-
1 AGAAAGAAG-GAAAG
*
1853800 AGAAAGAAGAAAAG
1 AGAAAGAAGGAAAG
1853814 CTAGAAGGAG
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
13 3 0.13
14 16 0.70
15 4 0.17
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (14 bp):
AGAAAGAAGGAAAG
Found at i:1855331 original size:25 final size:25
Alignment explanation
Indices: 1855297--1855359 Score: 83
Period size: 25 Copynumber: 2.5 Consensus size: 25
1855287 CGATCTGTGA
*
1855297 TTGATATATGTGGCAAGGCCATG-GG
1 TTGATATATGTGGCAAGGCCA-GAAG
*
1855322 TTGATATATGTGGCTAGGCCAGAAG
1 TTGATATATGTGGCAAGGCCAGAAG
*
1855347 TTGATATACGTGG
1 TTGATATATGTGG
1855360 TTGCGACCAC
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
24 1 0.03
25 33 0.97
ACGTcount: A:0.25, C:0.11, G:0.33, T:0.30
Consensus pattern (25 bp):
TTGATATATGTGGCAAGGCCAGAAG
Found at i:1858595 original size:35 final size:35
Alignment explanation
Indices: 1858546--1858640 Score: 104
Period size: 35 Copynumber: 2.7 Consensus size: 35
1858536 CTCAAGTACA
**
1858546 TAATTAA--AAATTATTTAATTAAGTTGTTGGGCT
1 TAATTAATTAAATTATTTAATTAAGTCATTGGGCT
* * *
1858579 TAATTAATTAAATTATTCAATTAAATCATTGGTCT
1 TAATTAATTAAATTATTTAATTAAGTCATTGGGCT
* *
1858614 TAATTGATTAAAATTGTTTAATTAAGT
1 TAATTAATT-AAATTATTTAATTAAGT
1858641 GGTTAAACTT
Statistics
Matches: 50, Mismatches: 9, Indels: 3
0.81 0.15 0.05
Matches are distributed among these distances:
33 7 0.14
35 29 0.58
36 14 0.28
ACGTcount: A:0.39, C:0.04, G:0.11, T:0.46
Consensus pattern (35 bp):
TAATTAATTAAATTATTTAATTAAGTCATTGGGCT
Found at i:1861523 original size:22 final size:22
Alignment explanation
Indices: 1861493--1861544 Score: 77
Period size: 22 Copynumber: 2.4 Consensus size: 22
1861483 TAAAATGTCA
* *
1861493 TATTTATATTTTAATTATAAGT
1 TATTAATATTTTAATAATAAGT
*
1861515 TATTAATATTTTTATAATAAGT
1 TATTAATATTTTAATAATAAGT
1861537 TATTAATA
1 TATTAATA
1861545 GTTGAATACT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (22 bp):
TATTAATATTTTAATAATAAGT
Found at i:1869622 original size:21 final size:21
Alignment explanation
Indices: 1869596--1869641 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
1869586 AAATTGCTTC
*
1869596 AATGATCCTTAAATTTGTTTG
1 AATGATCCTTAAAGTTGTTTG
** *
1869617 AATGATTTTTGAAGTTGTTTG
1 AATGATCCTTAAAGTTGTTTG
1869638 AATG
1 AATG
1869642 TGTTTTTGAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.28, C:0.04, G:0.20, T:0.48
Consensus pattern (21 bp):
AATGATCCTTAAAGTTGTTTG
Found at i:1869767 original size:21 final size:22
Alignment explanation
Indices: 1869743--1869783 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
1869733 CTTGGATAAG
1869743 TTTTGAAATTGTTT-GAATTAT
1 TTTTGAAATTGTTTGGAATTAT
*
1869764 TTTTGAATTTGTTTGGAATT
1 TTTTGAAATTGTTTGGAATT
1869784 GTTGGAATGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.24, C:0.00, G:0.17, T:0.59
Consensus pattern (22 bp):
TTTTGAAATTGTTTGGAATTAT
Found at i:1869784 original size:31 final size:31
Alignment explanation
Indices: 1869744--1869811 Score: 100
Period size: 31 Copynumber: 2.2 Consensus size: 31
1869734 TTGGATAAGT
* *
1869744 TTTGAAATTGTTTGAATTATTTTTGAATTTG
1 TTTGAAATTGTTGGAATGATTTTTGAATTTG
*
1869775 TTTGGAATTGTTGGAATGATTTTTGAATTTG
1 TTTGAAATTGTTGGAATGATTTTTGAATTTG
*
1869806 CTTGAA
1 TTTGAA
1869812 TGGTTTTAAG
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.25, C:0.01, G:0.21, T:0.53
Consensus pattern (31 bp):
TTTGAAATTGTTGGAATGATTTTTGAATTTG
Found at i:1869909 original size:21 final size:21
Alignment explanation
Indices: 1869878--1869941 Score: 58
Period size: 21 Copynumber: 3.1 Consensus size: 21
1869868 CCAAGTGTTC
*
1869878 GGCATAAAAGTATAGAGATCT
1 GGCACAAAAGTATAGAGATCT
* * * * *
1869899 GGCTCAAAAGTCTTGATACCT
1 GGCACAAAAGTATAGAGATCT
*
1869920 AGCAC-AAAGTATAGAGATCT
1 GGCACAAAAGTATAGAGATCT
1869940 GG
1 GG
1869942 TGGCTCTTGA
Statistics
Matches: 30, Mismatches: 13, Indels: 1
0.68 0.30 0.02
Matches are distributed among these distances:
20 12 0.40
21 18 0.60
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (21 bp):
GGCACAAAAGTATAGAGATCT
Found at i:1870530 original size:29 final size:29
Alignment explanation
Indices: 1870500--1870596 Score: 99
Period size: 29 Copynumber: 3.3 Consensus size: 29
1870490 GTTATGTTTG
*
1870500 ATCCTTGAAAGGTGTATAGGTTTTGCCTG
1 ATCCTTGAAAGGTGTATAGGTTTTGCCTA
* * * *
1870529 ATCATTGAAAGG-GCT-GAGGTTATGTCTA
1 ATCCTTGAAAGGTG-TATAGGTTTTGCCTA
* *
1870557 ATCCTTCAAAAGGTGTATAGGTTTTGCTTA
1 ATCCTT-GAAAGGTGTATAGGTTTTGCCTA
1870587 ATCCTTGAAA
1 ATCCTTGAAA
1870597 AAGCATTGTA
Statistics
Matches: 52, Mismatches: 12, Indels: 8
0.72 0.17 0.11
Matches are distributed among these distances:
28 15 0.29
29 21 0.40
30 16 0.31
ACGTcount: A:0.27, C:0.13, G:0.24, T:0.36
Consensus pattern (29 bp):
ATCCTTGAAAGGTGTATAGGTTTTGCCTA
Found at i:1870537 original size:57 final size:58
Alignment explanation
Indices: 1870476--1870597 Score: 165
Period size: 58 Copynumber: 2.1 Consensus size: 58
1870466 TGATTGATTC
* * * *
1870476 TTGAAAAGGCTAAGGTTATGTTTGATCCTT-GAAAGGTGTATAGGTTTTGCCTGATCA
1 TTGAAAAGGCTAAGGTTATGTCTAATCCTTCAAAAGGTGTATAGGTTTTGCCTAATCA
* * * *
1870533 TTGAAAGGGCTGAGGTTATGTCTAATCCTTCAAAAGGTGTATAGGTTTTGCTTAATCC
1 TTGAAAAGGCTAAGGTTATGTCTAATCCTTCAAAAGGTGTATAGGTTTTGCCTAATCA
1870591 TTGAAAA
1 TTGAAAA
1870598 AGCATTGTAA
Statistics
Matches: 55, Mismatches: 9, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
57 26 0.47
58 29 0.53
ACGTcount: A:0.28, C:0.11, G:0.25, T:0.36
Consensus pattern (58 bp):
TTGAAAAGGCTAAGGTTATGTCTAATCCTTCAAAAGGTGTATAGGTTTTGCCTAATCA
Found at i:1873077 original size:21 final size:21
Alignment explanation
Indices: 1873053--1873122 Score: 63
Period size: 21 Copynumber: 3.3 Consensus size: 21
1873043 GGATATTACT
1873053 TTTAAATTTAAACAAATTAAA
1 TTTAAATTTAAACAAATTAAA
* ** * *
1873074 TTTAAATGT-AATTAGTCCT-TA
1 TTTAAATTTAAACAAAT--TAAA
1873095 TTTAAATTTAAACAAATTAAA
1 TTTAAATTTAAACAAATTAAA
1873116 TTTAAAT
1 TTTAAAT
1873123 ATAATGNNNN
Statistics
Matches: 35, Mismatches: 10, Indels: 8
0.66 0.19 0.15
Matches are distributed among these distances:
20 5 0.14
21 25 0.71
22 5 0.14
ACGTcount: A:0.49, C:0.06, G:0.03, T:0.43
Consensus pattern (21 bp):
TTTAAATTTAAACAAATTAAA
Found at i:1881928 original size:35 final size:35
Alignment explanation
Indices: 1881880--1881962 Score: 96
Period size: 35 Copynumber: 2.3 Consensus size: 35
1881870 TTAATTGTTT
*
1881880 AATTTAATCAATT-AGACCAAACAACTTAATTAAAC
1 AATTAAATCAATTAAG-CCAAACAACTTAATTAAAC
* * *
1881915 AATTAAATTAATTAAGCCCAACAATTTAATTAAAC
1 AATTAAATCAATTAAGCCAAACAACTTAATTAAAC
*
1881950 AATATTAATCAAT
1 AAT-TAAATCAAT
1881963 CAGGCCTCAT
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
35 31 0.77
36 9 0.22
ACGTcount: A:0.52, C:0.14, G:0.02, T:0.31
Consensus pattern (35 bp):
AATTAAATCAATTAAGCCAAACAACTTAATTAAAC
Found at i:1881978 original size:71 final size:70
Alignment explanation
Indices: 1881903--1882099 Score: 174
Period size: 71 Copynumber: 2.8 Consensus size: 70
1881893 AGACCAAACA
*
1881903 ACTTAATTAAACAATTAAATTAATTAAGCCCAACAATTTAATTAAACAATATTAATCAATCAGG-
1 ACTTAATTAAACAATTAAATTAATTAAGCCCAACAACTTAATTAAACAAT-TTAATCAATCAGGT
*
1881967 CCTCATG
65 CC-AATG
*** * ** *** *
1881974 ACTTAATTATTTAATTTAAA-TAATTAGGCCCAATGACTTAATTATTTAATTTAAAT-AATTAGG
1 ACTTAATTAAACAA-TTAAATTAATTAAGCCCAACAACTTAATTAAACAATTT-AATCAATCAGG
1882037 TCCAATG
64 TCCAATG
*
1882044 ACTTAATTAAACAAATT-AATTAATT-AG-GC-ACAACTTAATTAAACAATTTTAATCAA
1 ACTTAATTAAAC-AATTAAATTAATTAAGCCCAACAACTTAATTAAACAA-TTTAATCAA
1882100 GTGCTTGAGA
Statistics
Matches: 97, Mismatches: 22, Indels: 17
0.71 0.16 0.12
Matches are distributed among these distances:
67 15 0.15
68 6 0.06
69 3 0.03
70 27 0.28
71 41 0.42
72 5 0.05
ACGTcount: A:0.45, C:0.13, G:0.06, T:0.36
Consensus pattern (70 bp):
ACTTAATTAAACAATTAAATTAATTAAGCCCAACAACTTAATTAAACAATTTAATCAATCAGGTC
CAATG
Found at i:1882010 original size:35 final size:35
Alignment explanation
Indices: 1881971--1882052 Score: 155
Period size: 35 Copynumber: 2.3 Consensus size: 35
1881961 ATCAGGCCTC
1881971 ATGACTTAATTATTTAATTTAAATAATTAGGCCCA
1 ATGACTTAATTATTTAATTTAAATAATTAGGCCCA
*
1882006 ATGACTTAATTATTTAATTTAAATAATTAGGTCCA
1 ATGACTTAATTATTTAATTTAAATAATTAGGCCCA
1882041 ATGACTTAATTA
1 ATGACTTAATTA
1882053 AACAAATTAA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
35 46 1.00
ACGTcount: A:0.40, C:0.10, G:0.09, T:0.41
Consensus pattern (35 bp):
ATGACTTAATTATTTAATTTAAATAATTAGGCCCA
Found at i:1882033 original size:106 final size:105
Alignment explanation
Indices: 1881868--1882072 Score: 234
Period size: 106 Copynumber: 1.9 Consensus size: 105
1881858 AGCCCAGTTA
*
1881868 ACTTAATTGTTTAATTTAATCAATTAGACCAAACAACTTAATTAAACAATTAAATTAATTAAGCC
1 ACTTAATTATTTAATTTAATCAATTAGACCAAACAACTTAATTAAACAATTAAATTAATTAAGCC
*
1881933 CAACAATTTAATTAAACAATATTAATCAATCAGGCCTCATG
66 CAACAACTTAATTAAACAA-ATTAATCAATCAGGCCTCATG
* * ** *** *
1881974 ACTTAATTATTTAATTTAAAT-AATTAGGCCCAATGACTTAATTATTTAATTTAAA-TAATTAGG
1 ACTTAATTATTTAATTT-AATCAATTAGACCAAACAACTTAATTAAACAA-TTAAATTAATTAAG
* ** * *
1882037 TCCAATGACTTAATTAAACAAATTAATTAATTAGGC
64 CCCAACAACTTAATTAAACAAATTAATCAATCAGGC
1882073 ACAACTTAAT
Statistics
Matches: 82, Mismatches: 15, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
105 13 0.16
106 61 0.74
107 8 0.10
ACGTcount: A:0.44, C:0.13, G:0.07, T:0.36
Consensus pattern (105 bp):
ACTTAATTATTTAATTTAATCAATTAGACCAAACAACTTAATTAAACAATTAAATTAATTAAGCC
CAACAACTTAATTAAACAAATTAATCAATCAGGCCTCATG
Found at i:1882068 original size:35 final size:35
Alignment explanation
Indices: 1881903--1882089 Score: 150
Period size: 35 Copynumber: 5.4 Consensus size: 35
1881893 AGACCAAACA
* **
1881903 ACTTAATTAAAC-AATTAAATTAATTAAGCCCAACA
1 ACTTAATTAAACAAATT-AATTAATTAGGCCCAATG
* * *
1881938 ATTTAATTAAACAATATTAATCAATCAGGCCTC-ATG
1 ACTTAATTAAACAA-ATTAATTAATTAGGCC-CAATG
*** * *
1881974 ACTTAATTATTTAATTTAAATAATTAGGCCCAATG
1 ACTTAATTAAACAAATTAATTAATTAGGCCCAATG
*** * * *
1882009 ACTTAATTATTTAATTTAAATAATTAGGTCCAATG
1 ACTTAATTAAACAAATTAATTAATTAGGCCCAATG
*
1882044 ACTTAATTAAACAAATTAATTAATTAGGCAC-A--
1 ACTTAATTAAACAAATTAATTAATTAGGCCCAATG
1882076 ACTTAATTAAACAA
1 ACTTAATTAAACAA
1882090 TTTTAATCAA
Statistics
Matches: 126, Mismatches: 22, Indels: 11
0.79 0.14 0.07
Matches are distributed among these distances:
32 14 0.11
34 2 0.02
35 84 0.67
36 22 0.17
37 4 0.03
ACGTcount: A:0.45, C:0.13, G:0.06, T:0.35
Consensus pattern (35 bp):
ACTTAATTAAACAAATTAATTAATTAGGCCCAATG
Found at i:1883914 original size:20 final size:20
Alignment explanation
Indices: 1883885--1883925 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
1883875 TTTTTTTTTG
1883885 AAACACAAATAAAACATGCA
1 AAACACAAATAAAACATGCA
* *
1883905 AAACATAAATAAAATATGCA
1 AAACACAAATAAAACATGCA
1883925 A
1 A
1883926 GACGTACCTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.66, C:0.15, G:0.05, T:0.15
Consensus pattern (20 bp):
AAACACAAATAAAACATGCA
Found at i:1885375 original size:36 final size:36
Alignment explanation
Indices: 1885328--1885402 Score: 132
Period size: 36 Copynumber: 2.1 Consensus size: 36
1885318 TAGAGAGCTC
*
1885328 AGCGCTGCAGCTATGTAGAAGTAGCGCCGCAGCGAT
1 AGCGCTGCAGCTATGTAGAAGTAGCGCCACAGCGAT
*
1885364 AGCGCTGCAGCTATGTAGAAGTAGCGCCACAGCGCT
1 AGCGCTGCAGCTATGTAGAAGTAGCGCCACAGCGAT
1885400 AGC
1 AGC
1885403 ACAGCAGCAC
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.25, C:0.27, G:0.32, T:0.16
Consensus pattern (36 bp):
AGCGCTGCAGCTATGTAGAAGTAGCGCCACAGCGAT
Found at i:1885410 original size:36 final size:36
Alignment explanation
Indices: 1885334--1885410 Score: 118
Period size: 36 Copynumber: 2.1 Consensus size: 36
1885324 GCTCAGCGCT
* * *
1885334 GCAGCTATGTAGAAGTAGCGCCGCAGCGATAGCGCT
1 GCAGCTATGTAGAAGTAGCGCCACAGCGATAGCACA
*
1885370 GCAGCTATGTAGAAGTAGCGCCACAGCGCTAGCACA
1 GCAGCTATGTAGAAGTAGCGCCACAGCGATAGCACA
1885406 GCAGC
1 GCAGC
1885411 ACTGGGCGAC
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.27, C:0.27, G:0.31, T:0.14
Consensus pattern (36 bp):
GCAGCTATGTAGAAGTAGCGCCACAGCGATAGCACA
Found at i:1891078 original size:60 final size:60
Alignment explanation
Indices: 1890983--1891099 Score: 198
Period size: 60 Copynumber: 1.9 Consensus size: 60
1890973 TATGCTAATT
* *
1890983 TCCAAAATCCTGTCAACTTTTTTTACTTTTGGAAAATCTCCCAGCGCTGCAGCACTAAGC
1 TCCAAAATCCCGTCAACTTTTTTTACTTTTGGAAAATCTCCCAACGCTGCAGCACTAAGC
* *
1891043 TCCAAAATCCCGTCAACTTTTTTTACTTTTTGAAAATCTCCCAATGCTGCAGCACTA
1 TCCAAAATCCCGTCAACTTTTTTTACTTTTGGAAAATCTCCCAACGCTGCAGCACTA
1891100 CTCCAGCGCT
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
60 53 1.00
ACGTcount: A:0.27, C:0.28, G:0.11, T:0.33
Consensus pattern (60 bp):
TCCAAAATCCCGTCAACTTTTTTTACTTTTGGAAAATCTCCCAACGCTGCAGCACTAAGC
Found at i:1898427 original size:21 final size:22
Alignment explanation
Indices: 1898392--1898435 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
1898382 CTCTTAAAGT
1898392 AATTTAAAATAAAATAACCTAA
1 AATTTAAAATAAAATAACCTAA
* *
1898414 AATTT-AACTAAAATAACTTAA
1 AATTTAAAATAAAATAACCTAA
1898435 A
1 A
1898436 TTAATCACTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 15 0.75
22 5 0.25
ACGTcount: A:0.61, C:0.09, G:0.00, T:0.30
Consensus pattern (22 bp):
AATTTAAAATAAAATAACCTAA
Found at i:1909609 original size:4 final size:4
Alignment explanation
Indices: 1909592--1909634 Score: 59
Period size: 4 Copynumber: 10.8 Consensus size: 4
1909582 CTCTAGGCAA
* * *
1909592 ACAT ACAC ACAT ACAT ACAT ACAT ATAT ATAT ACAT ACAT ACA
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACA
1909635 AATTCTCTAG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
4 35 1.00
ACGTcount: A:0.51, C:0.23, G:0.00, T:0.26
Consensus pattern (4 bp):
ACAT
Found at i:1910534 original size:20 final size:21
Alignment explanation
Indices: 1910509--1910549 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
1910499 TCTTACCAAG
* *
1910509 AATGTATTGATTCAT-TTGCT
1 AATGTATCGATACATCTTGCT
1910529 AATGTATCGATACATCTTGCT
1 AATGTATCGATACATCTTGCT
1910550 CAGATTACAC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.27, C:0.15, G:0.15, T:0.44
Consensus pattern (21 bp):
AATGTATCGATACATCTTGCT
Found at i:1912724 original size:42 final size:42
Alignment explanation
Indices: 1912677--1912854 Score: 164
Period size: 42 Copynumber: 4.3 Consensus size: 42
1912667 AATAAAATTT
* * *
1912677 CCATGATTTTGTTGTAAATTGGATTCAATAGGTCTTCAGTTC
1 CCATGATTTTGTTGTAAACTGGATTCAGTAGGTCTTCACTTC
* * * * *
1912719 TCATGATTTTGCTGTAAACTGGATTGAGTATGTCTCCACTTC
1 CCATGATTTTGTTGTAAACTGGATTCAGTAGGTCTTCACTTC
* * *
1912761 CCATGATTTT-TTGGTAAAGTGGATTTAGTAGGTCTTTACTTC
1 CCATGATTTTGTT-GTAAACTGGATTCAGTAGGTCTTCACTTC
* * * * * *
1912803 CTATGA--TTGTTATAAAGTGGATTGAGTAGGTCTCCACATC
1 CCATGATTTTGTTGTAAACTGGATTCAGTAGGTCTTCACTTC
*
1912843 CTATGATTTTGT
1 CCATGATTTTGT
1912855 ATATTGGCTA
Statistics
Matches: 111, Mismatches: 21, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
40 32 0.29
41 3 0.03
42 76 0.68
ACGTcount: A:0.23, C:0.15, G:0.20, T:0.42
Consensus pattern (42 bp):
CCATGATTTTGTTGTAAACTGGATTCAGTAGGTCTTCACTTC
Found at i:1912831 original size:40 final size:41
Alignment explanation
Indices: 1912733--1912850 Score: 139
Period size: 40 Copynumber: 2.9 Consensus size: 41
1912723 GATTTTGCTG
* * * * *
1912733 TAAACTGGATTGAGTATGTCTCCACTTCCCATGATTTTTTGG
1 TAAAGTGGATTGAGTAGGTCTCCACTTCCTATGA-TTGTTGA
* **
1912775 TAAAGTGGATTTAGTAGGTCTTTACTTCCTATGATTGTT-A
1 TAAAGTGGATTGAGTAGGTCTCCACTTCCTATGATTGTTGA
*
1912815 TAAAGTGGATTGAGTAGGTCTCCACATCCTATGATT
1 TAAAGTGGATTGAGTAGGTCTCCACTTCCTATGATT
1912851 TTGTATATTG
Statistics
Matches: 64, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
40 32 0.50
41 4 0.06
42 28 0.44
ACGTcount: A:0.25, C:0.15, G:0.20, T:0.40
Consensus pattern (41 bp):
TAAAGTGGATTGAGTAGGTCTCCACTTCCTATGATTGTTGA
Found at i:1916218 original size:36 final size:36
Alignment explanation
Indices: 1916178--1916263 Score: 127
Period size: 36 Copynumber: 2.4 Consensus size: 36
1916168 GTGTGCGGTG
* *
1916178 TGGGAGTGCACATGGCGATAATAGCAACGTGCAGCA
1 TGGGAGTGCACATGGCGATAATAGCAACGTACAACA
** *
1916214 TGGGAGTGCACATGGCGATAATAGCAGTGTACAATA
1 TGGGAGTGCACATGGCGATAATAGCAACGTACAACA
1916250 TGGGAGTGCACATG
1 TGGGAGTGCACATG
1916264 ACTTGTGTTA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
36 45 1.00
ACGTcount: A:0.30, C:0.16, G:0.34, T:0.20
Consensus pattern (36 bp):
TGGGAGTGCACATGGCGATAATAGCAACGTACAACA
Found at i:1918542 original size:8 final size:8
Alignment explanation
Indices: 1918529--1918560 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
1918519 AAGTGAGAAG
1918529 AGAAAGGA
1 AGAAAGGA
1918537 AGAAAGGA
1 AGAAAGGA
*
1918545 AGAAAGGG
1 AGAAAGGA
1918553 AGAAAGGA
1 AGAAAGGA
1918561 GGAAGTAGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.59, C:0.00, G:0.41, T:0.00
Consensus pattern (8 bp):
AGAAAGGA
Found at i:1938915 original size:93 final size:92
Alignment explanation
Indices: 1938747--1938954 Score: 251
Period size: 93 Copynumber: 2.3 Consensus size: 92
1938737 CTTTTCATTT
*
1938747 GTTACATTTAACACTGAAAAATAAAATATGTAGCAACTCAATATCTCTCAAAACCCTATCTTTAG
1 GTTACATTTAACACTGAAAAATAAAATATGTAGCAACTCAATATCTCTAAAAACCCTATCTTTAG
*
1938812 CAGGCTGATATGCACAACATCATATTA
66 CAGGCCGATATGCACAACATCATATTA
* ** * * * *
1938839 GTTACATTTAACACTTGAGAAATGGAATATGTAGTAGCTCAATCTCTCTAAAAACCTTATCTTTA
1 GTTACATTTAACAC-TGAAAAATAAAATATGTAGCAACTCAATATCTCTAAAAACCCTATCTTTA
* * * *
1938904 GCTA-GCCGATATGTAC--CTTTTACATTA
65 GC-AGGCCGATATGCACAAC-ATCATATTA
1938931 GTTACATTTAACACTGAAAAATAA
1 GTTACATTTAACACTGAAAAATAA
1938955 TATAGGAGTA
Statistics
Matches: 97, Mismatches: 16, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
91 8 0.08
92 34 0.35
93 54 0.56
94 1 0.01
ACGTcount: A:0.38, C:0.19, G:0.11, T:0.32
Consensus pattern (92 bp):
GTTACATTTAACACTGAAAAATAAAATATGTAGCAACTCAATATCTCTAAAAACCCTATCTTTAG
CAGGCCGATATGCACAACATCATATTA
Found at i:1943810 original size:15 final size:14
Alignment explanation
Indices: 1943790--1943839 Score: 55
Period size: 14 Copynumber: 3.4 Consensus size: 14
1943780 TGAGAAGAGA
1943790 AAAGGAGAAAGAAAG
1 AAAGGAGAAA-AAAG
1943805 AAAGGAAGAAAAAAG
1 AAAGG-AGAAAAAAG
* * *
1943820 GAAGAAGAAAAAGG
1 AAAGGAGAAAAAAG
1943834 AAAGGA
1 AAAGGA
1943840 AAGANNNNNN
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
14 12 0.41
15 12 0.41
16 5 0.17
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (14 bp):
AAAGGAGAAAAAAG
Found at i:1943812 original size:26 final size:29
Alignment explanation
Indices: 1943783--1943840 Score: 77
Period size: 26 Copynumber: 2.1 Consensus size: 29
1943773 AACAAAGTGA
* *
1943783 GAAGAGAAAAGG-AGAA-AGAAA-GAAAG
1 GAAGAAAAAAGGAAGAAGAAAAAGGAAAG
1943809 GAAGAAAAAAGGAAGAAGAAAAAGGAAAG
1 GAAGAAAAAAGGAAGAAGAAAAAGGAAAG
1943838 GAA
1 GAA
1943841 AGANNNNNNN
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
26 11 0.41
27 4 0.15
28 4 0.15
29 8 0.30
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (29 bp):
GAAGAAAAAAGGAAGAAGAAAAAGGAAAG
Found at i:1956435 original size:56 final size:56
Alignment explanation
Indices: 1956331--1956437 Score: 153
Period size: 56 Copynumber: 1.9 Consensus size: 56
1956321 ATTATACAAC
* *
1956331 TTTAGATCACTTAATCAACCTAACTATGAAAAAATAAATAAAAGACTTACATGCAT
1 TTTAGATCACTAAATCAACCTAACTATGAAAAAATAAATAAAACACTTACATGCAT
* * *
1956387 TTTAGATCACTAAATCAACTTGACTATGAAAAAA-AAATGAACACACTTACA
1 TTTAGATCACTAAATCAACCTAACTATGAAAAAATAAAT-AAAACACTTACA
1956438 CGTATGTGGT
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
55 4 0.09
56 41 0.91
ACGTcount: A:0.49, C:0.17, G:0.07, T:0.27
Consensus pattern (56 bp):
TTTAGATCACTAAATCAACCTAACTATGAAAAAATAAATAAAACACTTACATGCAT
Found at i:1973234 original size:36 final size:36
Alignment explanation
Indices: 1973180--1973261 Score: 103
Period size: 36 Copynumber: 2.3 Consensus size: 36
1973170 TAGCTTCAAA
* *
1973180 GTCTTGATGCCCAACACAAAGTATAGAGA-TATGGTG
1 GTCTTGATACCCAACACAAAGTATAAAGACT-TGGTG
**
1973216 GTCTTGATACCCGGCACAAAGTATAAAGACTTGGTG
1 GTCTTGATACCCAACACAAAGTATAAAGACTTGGTG
*
1973252 GTCTCGATAC
1 GTCTTGATAC
1973262 TTGACTTTAA
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
36 39 0.98
37 1 0.03
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (36 bp):
GTCTTGATACCCAACACAAAGTATAAAGACTTGGTG
Found at i:1976924 original size:68 final size:67
Alignment explanation
Indices: 1976783--1977015 Score: 186
Period size: 68 Copynumber: 3.4 Consensus size: 67
1976773 NNNNNTAAGG
* * * * * * * *
1976783 TATATGGAATTTACATCATATACATAATCTTATAGCATTTATGATGCTTGCTCCATCATCTCATG
1 TATATGGAATCTACATCATATACATAATCTCATAGCATTAATCATGCATACTACATCAGCT-ATG
1976848 TAA
65 TAA
1976851 TATATGGAATCTACATCATATACATAATCTCATAGCATTAATCATGCATACTTAC-TCAGCT-TG
1 TATATGGAATCTACATCATATACATAATCTCATAGCATTAATCATGCATAC-TACATCAGCTATG
1976914 T-A
65 TAA
* * * ** * ** *
1976916 TGGCATATGAAATCTACATCATATACACAGTCTTGTAGTA-TACATCATGCATACTTGATCATCT
1 T---ATATGGAATCTACATCATATACATAATCTCATAGCATTA-ATCATGCATACTACATCAGCT
* *
1976980 CATATCA
62 -ATGTAA
* *
1976987 TATATGGAATTTATATCATATACATAATC
1 TATATGGAATCTACATCATATACATAATC
1977016 CTTAAGGCAT
Statistics
Matches: 133, Mismatches: 23, Indels: 18
0.76 0.13 0.10
Matches are distributed among these distances:
65 2 0.02
66 3 0.02
67 3 0.02
68 119 0.89
69 2 0.02
70 2 0.02
71 2 0.02
ACGTcount: A:0.35, C:0.18, G:0.10, T:0.37
Consensus pattern (67 bp):
TATATGGAATCTACATCATATACATAATCTCATAGCATTAATCATGCATACTACATCAGCTATGT
AA
Found at i:1982007 original size:8 final size:8
Alignment explanation
Indices: 1981991--1982032 Score: 57
Period size: 8 Copynumber: 5.0 Consensus size: 8
1981981 ACATGGCATC
1981991 TTTTATTTT
1 TTTTA-TTT
*
1982000 TTTTTTTT
1 TTTTATTT
1982008 ATTTTATTT
1 -TTTTATTT
1982017 TTTTATTT
1 TTTTATTT
1982025 TTTTATTT
1 TTTTATTT
1982033 CTTTGAGTAC
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
8 19 0.63
9 11 0.37
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (8 bp):
TTTTATTT
Found at i:1982009 original size:13 final size:13
Alignment explanation
Indices: 1981991--1982028 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
1981981 ACATGGCATC
1981991 TTTTATTTTTTTT
1 TTTTATTTTTTTT
*
1982004 TTTTATTTTATTT
1 TTTTATTTTTTTT
1982017 TTTTATTTTTTT
1 TTTTATTTTTTT
1982029 ATTTCTTTGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.11, C:0.00, G:0.00, T:0.89
Consensus pattern (13 bp):
TTTTATTTTTTTT
Found at i:1982014 original size:18 final size:19
Alignment explanation
Indices: 1981991--1982026 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
1981981 ACATGGCATC
1981991 TTTTATTTTTTT-TTTTTA
1 TTTTATTTTTTTATTTTTA
1982009 TTTTATTTTTTTATTTTT
1 TTTTATTTTTTTATTTTT
1982027 TTATTTCTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.11, C:0.00, G:0.00, T:0.89
Consensus pattern (19 bp):
TTTTATTTTTTTATTTTTA
Found at i:1982019 original size:16 final size:16
Alignment explanation
Indices: 1981991--1982032 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 16
1981981 ACATGGCATC
*
1981991 TTTTATTTTTTTTTTTT
1 TTTTA-TTTTTTTATTT
1982008 ATTTTATTTTTTTATTT
1 -TTTTATTTTTTTATTT
1982025 TTTTATTT
1 TTTTATTT
1982033 CTTTGAGTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 8 0.35
17 10 0.43
18 5 0.22
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (16 bp):
TTTTATTTTTTTATTT
Found at i:1996857 original size:15 final size:15
Alignment explanation
Indices: 1996816--1996859 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
1996806 ACTTTACAAT
*
1996816 GCAATGTGATTGCAG
1 GCAATGTGATTGCAA
* *
1996831 GTAATATGATTGCAA
1 GCAATGTGATTGCAA
*
1996846 GCAATGTCATTGCA
1 GCAATGTGATTGCA
1996860 GGGAAAATAA
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.30
Consensus pattern (15 bp):
GCAATGTGATTGCAA
Found at i:1997147 original size:34 final size:33
Alignment explanation
Indices: 1997075--1997162 Score: 104
Period size: 33 Copynumber: 2.6 Consensus size: 33
1997065 TTTTAATGTC
* * *
1997075 ATATATTTTATTTTCATTTATTATTATAATCTT
1 ATATATTTTATTTTTATTTTTTAATATAATCTT
*
1997108 ATATATTTTATTTTTATTTTTCTAATATAATTTT
1 ATATATTTTATTTTTATTTTT-TAATATAATCTT
* *
1997142 TTATATTATATATTTTATTTT
1 ATATATTTTAT-TTTTATTTT
1997163 AATTTATTTT
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
33 19 0.40
34 19 0.40
35 9 0.19
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.67
Consensus pattern (33 bp):
ATATATTTTATTTTTATTTTTTAATATAATCTT
Found at i:1997173 original size:50 final size:50
Alignment explanation
Indices: 1997114--1997268 Score: 123
Period size: 50 Copynumber: 3.0 Consensus size: 50
1997104 TCTTATATAT
*
1997114 TTTATTTTTATTTTTCTAATATAATTTTTTATATTATATATTTTATTTTAA
1 TTTA-TTTTATTTTTCTTATATAATTTTTTATATTATATATTTTATTTTAA
** * * * * * * *
1997165 TTTATTTTACCTATATTATATAAATTTTAATTTTTTATATTTTATTTTAT
1 TTTATTTTATTTTTCTTATATAATTTTTTATATTATATATTTTATTTTAA
* * * * * *
1997215 TTTAATTT-TTATTCTTATGTTATATATTTTATGTTAATATTTTTTATTTTAA
1 TTTATTTTATTTTTCTTAT-ATA-ATTTTTTATATT-ATATATTTTATTTTAA
1997267 TT
1 TT
1997269 ATAATATTAT
Statistics
Matches: 77, Mismatches: 24, Indels: 5
0.73 0.23 0.05
Matches are distributed among these distances:
49 5 0.06
50 45 0.58
51 12 0.16
52 15 0.19
ACGTcount: A:0.28, C:0.03, G:0.01, T:0.68
Consensus pattern (50 bp):
TTTATTTTATTTTTCTTATATAATTTTTTATATTATATATTTTATTTTAA
Found at i:1997203 original size:24 final size:25
Alignment explanation
Indices: 1997176--1997224 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
1997166 TTATTTTACC
1997176 TATATTATA-TAAATTTTAATTTTT
1 TATATTATATTAAATTTTAATTTTT
* **
1997200 TATATTTTATTTTATTTTAATTTTT
1 TATATTATATTAAATTTTAATTTTT
1997225 ATTCTTATGT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
24 8 0.38
25 13 0.62
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (25 bp):
TATATTATATTAAATTTTAATTTTT
Found at i:1997206 original size:35 final size:32
Alignment explanation
Indices: 1997143--1997208 Score: 80
Period size: 35 Copynumber: 1.9 Consensus size: 32
1997133 TATAATTTTT
1997143 TATATTATATATTTTATTTTAATTTATTTTACC
1 TATATTATATATTTTATTTT-ATTTATTTTACC
1997176 TATATTATATAAATTTTAATTTT-TTATATTTTA
1 TATATTATAT--ATTTT-ATTTTATT-TATTTTA
1997209 TTTTATTTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
33 10 0.34
34 2 0.07
35 12 0.41
36 5 0.17
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (32 bp):
TATATTATATATTTTATTTTATTTATTTTACC
Found at i:1997254 original size:15 final size:15
Alignment explanation
Indices: 1997224--1997267 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
1997214 TTTTAATTTT
1997224 TATTCTTATGTT-ATA
1 TATT-TTATGTTAATA
1997239 TATTTTATGTTAATA
1 TATTTTATGTTAATA
* *
1997254 TTTTTTATTTTAAT
1 TATTTTATGTTAAT
1997268 TATAATATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
14 7 0.27
15 19 0.73
ACGTcount: A:0.27, C:0.02, G:0.05, T:0.66
Consensus pattern (15 bp):
TATTTTATGTTAATA
Found at i:1997256 original size:13 final size:14
Alignment explanation
Indices: 1997224--1997257 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
1997214 TTTTAATTTT
1997224 TATTCTTATGTTATA
1 TATT-TTATGTTATA
1997239 TATTTTATGTTA-A
1 TATTTTATGTTATA
1997252 TATTTT
1 TATTTT
1997258 TTATTTTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 7 0.37
14 8 0.42
15 4 0.21
ACGTcount: A:0.26, C:0.03, G:0.06, T:0.65
Consensus pattern (14 bp):
TATTTTATGTTATA
Found at i:1997260 original size:52 final size:54
Alignment explanation
Indices: 1997143--1997265 Score: 128
Period size: 52 Copynumber: 2.3 Consensus size: 54
1997133 TATAATTTTT
**
1997143 TATATTATATATTTTATTTTAATTTATTTTACCTATATTATATAAATTTTAATTTTT
1 TATATT-T-TATTTTATTTTAATTTATTTTACCTATATTATAT-AATTTTAATTTAA
* *
1997200 TATATTTTATTTTATTTTAATTT-TTATT-CTTATGTTATAT-ATTTT-ATGTTAA
1 TATATTTTATTTTATTTTAATTTATT-TTACCTATATTATATAATTTTAAT-TTAA
*
1997252 TATTTTTTATTTTA
1 TATATTTTATTTTA
1997266 ATTATAATAT
Statistics
Matches: 59, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
51 2 0.03
52 20 0.34
54 12 0.20
55 18 0.31
56 1 0.02
57 6 0.10
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (54 bp):
TATATTTTATTTTATTTTAATTTATTTTACCTATATTATATAATTTTAATTTAA
Found at i:2004102 original size:25 final size:25
Alignment explanation
Indices: 2004069--2004123 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
2004059 TGTGGTTGCA
*
2004069 ACCACGTATATCAACTCATGGCCTT
1 ACCACGTATAACAACTCATGGCCTT
* **
2004094 ACCATGTATAACAACTTGTGGCCTT
1 ACCACGTATAACAACTCATGGCCTT
2004119 ACCAC
1 ACCAC
2004124 ATCTAACAGC
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.29, C:0.31, G:0.13, T:0.27
Consensus pattern (25 bp):
ACCACGTATAACAACTCATGGCCTT
Found at i:2005671 original size:11 final size:11
Alignment explanation
Indices: 2005650--2005683 Score: 61
Period size: 11 Copynumber: 3.2 Consensus size: 11
2005640 TCCTCCAATT
2005650 TTTCT-TTTTC
1 TTTCTCTTTTC
2005660 TTTCTCTTTTC
1 TTTCTCTTTTC
2005671 TTTCTCTTTTC
1 TTTCTCTTTTC
2005682 TT
1 TT
2005684 CCTTTTAGGT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 5 0.22
11 18 0.78
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (11 bp):
TTTCTCTTTTC
Found at i:2005671 original size:17 final size:16
Alignment explanation
Indices: 2005649--2005683 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
2005639 TTCCTCCAAT
*
2005649 TTTTCTTTTTCTTTCTC
1 TTTTCTTTCTCTTT-TC
2005666 TTTTCTTTCTCTTTTC
1 TTTTCTTTCTCTTTTC
2005682 TT
1 TT
2005684 CCTTTTAGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 4 0.24
17 13 0.76
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (16 bp):
TTTTCTTTCTCTTTTC
Found at i:2011070 original size:26 final size:26
Alignment explanation
Indices: 2011041--2011093 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2011031 TTCCTAGTCG
*
2011041 ATTTCAAGAGTTAGTTTCCAAACTCA
1 ATTTCAAGACTTAGTTTCCAAACTCA
2011067 ATTTCAAGACTTAGTTTCCAAACTCA
1 ATTTCAAGACTTAGTTTCCAAACTCA
2011093 A
1 A
2011094 GTTAGCATCT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (26 bp):
ATTTCAAGACTTAGTTTCCAAACTCA
Found at i:2022048 original size:2 final size:2
Alignment explanation
Indices: 2022036--2022069 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
2022026 TTGTTTTAAA
2022036 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2022070 CCAAAGGAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
1 2 0.07
2 28 0.93
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:2024576 original size:19 final size:19
Alignment explanation
Indices: 2024554--2024593 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
2024544 TGGATCTAAT
2024554 TGATTCCATAGATATGAAA
1 TGATTCCATAGATATGAAA
2024573 TGATTCCATAGATATGAAA
1 TGATTCCATAGATATGAAA
2024592 TG
1 TG
2024594 CTAATGGATC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.40, C:0.10, G:0.17, T:0.33
Consensus pattern (19 bp):
TGATTCCATAGATATGAAA
Found at i:2026827 original size:19 final size:18
Alignment explanation
Indices: 2026799--2026838 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
2026789 TTATTAATAT
*
2026799 TAAATTTTATCATATTTGA
1 TAAATATTATCATATTT-A
*
2026818 TAAATATTATGATATTTA
1 TAAATATTATCATATTTA
2026836 TAA
1 TAA
2026839 TTTTTATTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 4 0.21
19 15 0.79
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.50
Consensus pattern (18 bp):
TAAATATTATCATATTTA
Found at i:2027569 original size:28 final size:27
Alignment explanation
Indices: 2027537--2027589 Score: 70
Period size: 28 Copynumber: 1.9 Consensus size: 27
2027527 TATTACACAA
* * *
2027537 TTATATCATTATATCATATCATCATCTG
1 TTATAACATGATAACATATCA-CATCTG
2027565 TTATAACATGATAACATATCACATC
1 TTATAACATGATAACATATCACATC
2027590 AACACCACAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 4 0.18
28 18 0.82
ACGTcount: A:0.38, C:0.19, G:0.04, T:0.40
Consensus pattern (27 bp):
TTATAACATGATAACATATCACATCTG
Found at i:2032739 original size:12 final size:11
Alignment explanation
Indices: 2032706--2032748 Score: 52
Period size: 12 Copynumber: 3.8 Consensus size: 11
2032696 CATCTCTTAA
2032706 TAATATAATAT
1 TAATATAATAT
*
2032717 TCATGATAATAT
1 TAAT-ATAATAT
2032729 TAATATAAATAT
1 TAATAT-AATAT
2032741 T-ATATAAT
1 TAATATAAT
2032749 TATATCATTA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
10 3 0.11
11 9 0.32
12 16 0.57
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.44
Consensus pattern (11 bp):
TAATATAATAT
Found at i:2033024 original size:57 final size:59
Alignment explanation
Indices: 2032936--2033053 Score: 163
Period size: 57 Copynumber: 2.0 Consensus size: 59
2032926 TCATAAACCT
* * *
2032936 AATTTAAATCTAGTATTCGCAATGCTAACCTCTTAG-GCTC-TTGGTAATTGATAGGTA
1 AATTTAAATCTAGTATTCCCAATGCTAACCTCTTAGCCCCCTTTGGTAATTGATAGGTA
2032993 AATTTAAATCTAGCT-TTCCCAATGGC-AACCTCTTAGCCCCCTTTGGTAATTGATAGGTA
1 AATTTAAATCTAG-TATTCCCAAT-GCTAACCTCTTAGCCCCCTTTGGTAATTGATAGGTA
2033052 AA
1 AA
2033054 GGGAATGTGG
Statistics
Matches: 54, Mismatches: 3, Indels: 6
0.86 0.05 0.10
Matches are distributed among these distances:
57 30 0.56
58 5 0.09
59 19 0.35
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.35
Consensus pattern (59 bp):
AATTTAAATCTAGTATTCCCAATGCTAACCTCTTAGCCCCCTTTGGTAATTGATAGGTA
Found at i:2036459 original size:37 final size:37
Alignment explanation
Indices: 2036410--2036487 Score: 138
Period size: 37 Copynumber: 2.1 Consensus size: 37
2036400 CTGTTCGTCA
2036410 AAAACAATGATTAAGGTTAGGACCAATAACATCTCAC
1 AAAACAATGATTAAGGTTAGGACCAATAACATCTCAC
* *
2036447 AAAACAATGATTAAGGTTAGGATCAATAACATCTCAT
1 AAAACAATGATTAAGGTTAGGACCAATAACATCTCAC
2036484 AAAA
1 AAAA
2036488 GAAACAAAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.49, C:0.15, G:0.13, T:0.23
Consensus pattern (37 bp):
AAAACAATGATTAAGGTTAGGACCAATAACATCTCAC
Found at i:2037660 original size:3 final size:3
Alignment explanation
Indices: 2037652--2037692 Score: 64
Period size: 3 Copynumber: 13.7 Consensus size: 3
2037642 ATGTAAAAAC
* *
2037652 AAT AAT AAT AAT AAT AAT AAT AAT AAT ATT AAT ATT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
2037693 AAGAGGAAGA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (3 bp):
AAT
Found at i:2040123 original size:54 final size:54
Alignment explanation
Indices: 2040024--2040126 Score: 125
Period size: 54 Copynumber: 1.9 Consensus size: 54
2040014 AATGCATCAG
* * * * *
2040024 CCACTGTACATGATTAGGGGATAACTTCATGTTACCCGCAGCATGGATTCTCAT
1 CCACTGTACATGATTAGGGGAAAACTACATGTCAACCACAGCATGGATTCTCAT
* * * *
2040078 CCACTGTACATTATTAGGGGAAAAGTACATGTCAACTACATCATGGATT
1 CCACTGTACATGATTAGGGGAAAACTACATGTCAACCACAGCATGGATT
2040127 TTTGTCATGC
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
54 40 1.00
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.29
Consensus pattern (54 bp):
CCACTGTACATGATTAGGGGAAAACTACATGTCAACCACAGCATGGATTCTCAT
Found at i:2043740 original size:14 final size:14
Alignment explanation
Indices: 2043720--2043761 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 14
2043710 AATAATAAAC
2043720 ATATAAAAAAAAGAA
1 ATATAAAAAAAA-AA
2043735 AT-TAAATAAAAAAA
1 ATATAAA-AAAAAAA
*
2043749 CTATAAAAAAAAA
1 ATATAAAAAAAAA
2043762 GTGTGTGGAT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
14 13 0.54
15 11 0.46
ACGTcount: A:0.79, C:0.02, G:0.02, T:0.17
Consensus pattern (14 bp):
ATATAAAAAAAAAA
Found at i:2043868 original size:5 final size:6
Alignment explanation
Indices: 2043850--2043875 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
2043840 CTATTCTTGA
2043850 TTCTTT TTCTTT TTCTTT TTCTTT TT
1 TTCTTT TTCTTT TTCTTT TTCTTT TT
2043876 TTATCTATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (6 bp):
TTCTTT
Found at i:2045354 original size:21 final size:20
Alignment explanation
Indices: 2045316--2045354 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
2045306 CACATCAATA
* *
2045316 ATATATGAAATAAGTATTAG
1 ATATATAAAATAAATATTAG
2045336 ATATATAAACATAAATATT
1 ATATATAAA-ATAAATATT
2045355 TTACCAGCTA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 8 0.50
21 8 0.50
ACGTcount: A:0.54, C:0.03, G:0.08, T:0.36
Consensus pattern (20 bp):
ATATATAAAATAAATATTAG
Found at i:2045668 original size:51 final size:51
Alignment explanation
Indices: 2045589--2045686 Score: 117
Period size: 51 Copynumber: 1.9 Consensus size: 51
2045579 CATATTATAT
* * * * *
2045589 TATCATCCACTATAATATAGTGACATTAATAT-GAAGGATGAAAATATGCAC
1 TATCATCCACCATAACATAATAACATTAATATAGAAAG-TGAAAATATGCAC
* *
2045640 TATCATCCACCATAACATAATAATATTAATGTAGAAAGTGAAAATAT
1 TATCATCCACCATAACATAATAACATTAATATAGAAAGTGAAAATAT
2045687 CATGTTAATA
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
51 35 0.90
52 4 0.10
ACGTcount: A:0.46, C:0.13, G:0.11, T:0.30
Consensus pattern (51 bp):
TATCATCCACCATAACATAATAACATTAATATAGAAAGTGAAAATATGCAC
Found at i:2046628 original size:28 final size:28
Alignment explanation
Indices: 2046593--2046647 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 28
2046583 ATTAGAAATT
2046593 TTATTTATATTTGATATAATATATTTAC
1 TTATTTATATTTGATATAATATATTTAC
* * * *
2046621 TTATTTATTTTTGGTGTAATTTATTTA
1 TTATTTATATTTGATATAATATATTTA
2046648 TTTGTAATAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.29, C:0.02, G:0.07, T:0.62
Consensus pattern (28 bp):
TTATTTATATTTGATATAATATATTTAC
Found at i:2052903 original size:2 final size:2
Alignment explanation
Indices: 2052896--2052936 Score: 73
Period size: 2 Copynumber: 20.5 Consensus size: 2
2052886 GAGTATGTAT
*
2052896 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA AA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
2052937 CTACAACAGC
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:2053484 original size:7 final size:6
Alignment explanation
Indices: 2053465--2053497 Score: 57
Period size: 6 Copynumber: 5.3 Consensus size: 6
2053455 ACAATCATTC
2053465 AATAAA AATAAA AATAAA AATAAA AATTAAA AA
1 AATAAA AATAAA AATAAA AATAAA AA-TAAA AA
2053498 CCCAAAAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 20 0.77
7 6 0.23
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (6 bp):
AATAAA
Found at i:2059426 original size:2 final size:2
Alignment explanation
Indices: 2059421--2059463 Score: 68
Period size: 2 Copynumber: 21.5 Consensus size: 2
2059411 GTAATGTGTG
* *
2059421 AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT GT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2059463 A
1 A
2059464 AAGTTTTTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.49
Consensus pattern (2 bp):
AT
Found at i:2059732 original size:50 final size:50
Alignment explanation
Indices: 2059677--2059808 Score: 140
Period size: 50 Copynumber: 2.6 Consensus size: 50
2059667 CTTACTTGAA
* *
2059677 AAAAAAAATCTTTAAACATTTTGAGCATTTTAGAGT-AGTTTTTGATACAT
1 AAAAAAAATCTTTGAGCATTTTGAGCATTTTAGAGTGA-TTTTTGATACAT
* * * * * * * *
2059727 GAAAAAAACCTTTGAGTATTTTAAGTATTTTGGAGTGATTTTTTATGCAT
1 AAAAAAAATCTTTGAGCATTTTGAGCATTTTAGAGTGATTTTTGATACAT
*
2059777 AAAAAAAATCGTTGGAGCATTTTGAGCATTTT
1 AAAAAAAATC-TTTGAGCATTTTGAGCATTTT
2059809 TCGCCAAGTA
Statistics
Matches: 64, Mismatches: 16, Indels: 3
0.77 0.19 0.04
Matches are distributed among these distances:
50 46 0.72
51 18 0.28
ACGTcount: A:0.36, C:0.08, G:0.16, T:0.40
Consensus pattern (50 bp):
AAAAAAAATCTTTGAGCATTTTGAGCATTTTAGAGTGATTTTTGATACAT
Found at i:2059965 original size:22 final size:23
Alignment explanation
Indices: 2059940--2059988 Score: 57
Period size: 22 Copynumber: 2.2 Consensus size: 23
2059930 GTTTTTGGAC
*
2059940 ATTGCT-TGATTAATTTTTAAGT
1 ATTGCTGTGACTAATTTTTAAGT
* *
2059962 ATTG-TGTGACTAGTTTTTAGGT
1 ATTGCTGTGACTAATTTTTAAGT
2059984 ATTGC
1 ATTGC
2059989 ATGACTAGTT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
21 1 0.05
22 21 0.95
ACGTcount: A:0.22, C:0.06, G:0.20, T:0.51
Consensus pattern (23 bp):
ATTGCTGTGACTAATTTTTAAGT
Found at i:2059993 original size:22 final size:22
Alignment explanation
Indices: 2059953--2059998 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
2059943 GCTTGATTAA
**
2059953 TTTTTAAGTATTGTGTGACTAG
1 TTTTTAAGTATTGCATGACTAG
*
2059975 TTTTTAGGTATTGCATGACTAG
1 TTTTTAAGTATTGCATGACTAG
2059997 TT
1 TT
2059999 GATATAACAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.22, C:0.07, G:0.22, T:0.50
Consensus pattern (22 bp):
TTTTTAAGTATTGCATGACTAG
Found at i:2062584 original size:15 final size:15
Alignment explanation
Indices: 2062556--2062622 Score: 89
Period size: 15 Copynumber: 4.4 Consensus size: 15
2062546 CGTTTGGTAC
2062556 ATTACAATGTAATGTG
1 ATTACAA-GTAATGTG
*
2062572 ATTACAGGTAATGTG
1 ATTACAAGTAATGTG
*
2062587 ATTGCAAGTAATGTG
1 ATTACAAGTAATGTG
* *
2062602 ATTGCAAGCAATGTG
1 ATTACAAGTAATGTG
2062617 ATTACA
1 ATTACA
2062623 GGAAAATAAC
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
15 40 0.87
16 6 0.13
ACGTcount: A:0.36, C:0.09, G:0.22, T:0.33
Consensus pattern (15 bp):
ATTACAAGTAATGTG
Found at i:2062961 original size:49 final size:49
Alignment explanation
Indices: 2062908--2063074 Score: 138
Period size: 49 Copynumber: 3.1 Consensus size: 49
2062898 TATTATTAAT
2062908 TTTTATATAATATCATTTCTTAAATATATTTTTAATGTCATATATTTTA
1 TTTTATATAATATCATTTCTTAAATATATTTTTAATGTCATATATTTTA
* * * * * *
2062957 TTTTATTTATTATTATAATATAT-TTATATTTATTTTTTAATATATTTATATTTTTATTATTAA
1 TTTTA--TA-TAATATCAT-T-TCTTAAATATA-TTTTT-A-AT-GTCATA----TATT-TT-A
2063020 TTTTATATAATATCATTTCTTAAATATATTTTTAATGTCATATATTTTA
1 TTTTATATAATATCATTTCTTAAATATATTTTTAATGTCATATATTTTA
2063069 TTTTAT
1 TTTTAT
2063075 TTATTATTAT
Statistics
Matches: 90, Mismatches: 12, Indels: 32
0.67 0.09 0.24
Matches are distributed among these distances:
49 12 0.13
50 2 0.02
51 6 0.07
52 7 0.08
53 8 0.09
54 6 0.07
55 5 0.06
56 4 0.04
57 5 0.06
58 6 0.07
59 8 0.09
60 7 0.08
61 6 0.07
62 2 0.02
63 6 0.07
ACGTcount: A:0.34, C:0.04, G:0.01, T:0.62
Consensus pattern (49 bp):
TTTTATATAATATCATTTCTTAAATATATTTTTAATGTCATATATTTTA
Found at i:2062999 original size:20 final size:23
Alignment explanation
Indices: 2062955--2063139 Score: 121
Period size: 22 Copynumber: 8.4 Consensus size: 23
2062945 TCATATATTT
2062955 TATTT-TATTTATTATTA-TAATA
1 TATTTATATTT-TTATTATTAATA
2062977 TATTTATATTTATT-TT-TTAATA
1 TATTTATATTT-TTATTATTAATA
2062999 TATTTATATTTTTATTATTAAT-
1 TATTTATATTTTTATTATTAATA
* * * *
2063021 T-TTATATAATATCATTTCTTAAATA
1 TATT-TATATTTTTA-TTATT-AATA
* * * *
2063046 TATTTTTAATGTCATATATT--T-
1 TATTTATATTTTTAT-TATTAATA
2063067 TATTT-TATTTATTATTA-TAATA
1 TATTTATATTT-TTATTATTAATA
*
2063089 T-TTTATA-TTTTATTTTTAATA
1 TATTTATATTTTTATTATTAATA
2063110 TATTTATATTTTTATTATTAAT-
1 TATTTATATTTTTATTATTAATA
2063132 T-TTTATAT
1 TATTTATAT
2063140 AATATCATTT
Statistics
Matches: 133, Mismatches: 12, Indels: 37
0.73 0.07 0.20
Matches are distributed among these distances:
19 1 0.01
20 10 0.08
21 31 0.23
22 44 0.33
23 29 0.22
24 4 0.03
25 12 0.09
26 2 0.02
ACGTcount: A:0.33, C:0.02, G:0.01, T:0.65
Consensus pattern (23 bp):
TATTTATATTTTTATTATTAATA
Found at i:2063140 original size:23 final size:22
Alignment explanation
Indices: 2063063--2063140 Score: 70
Period size: 23 Copynumber: 3.5 Consensus size: 22
2063053 AATGTCATAT
*
2063063 ATTTTATTTTATTTATTATTA-TA
1 ATTTT-TTATATTT-TTATTATTA
* *
2063086 ATATTTTATA-TTTTATTTTTA
1 ATTTTTTATATTTTTATTATTA
*
2063107 ATATATTTATATTTTTATTATTA
1 AT-TTTTTATATTTTTATTATTA
2063130 ATTTTTATATA
1 ATTTTT-TATA
2063141 ATATCATTTC
Statistics
Matches: 44, Mismatches: 7, Indels: 8
0.75 0.12 0.14
Matches are distributed among these distances:
20 5 0.11
21 6 0.14
22 13 0.30
23 20 0.45
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (22 bp):
ATTTTTTATATTTTTATTATTA
Found at i:2063200 original size:68 final size:68
Alignment explanation
Indices: 2063110--2063256 Score: 181
Period size: 68 Copynumber: 2.2 Consensus size: 68
2063100 ATTTTTAATA
* *
2063110 TATTTATATTTTTATTATTAATTTTTATATAATATCATTTCTTAA-ATATTTTTAAATATCATAT
1 TATTTTTATTTTTATTATTAATTTATATATAATATCATTTCTTAATATATTTTT-AATATCATAT
2063174 ATTT
65 ATTT
* * * * * *
2063178 TATTTTTATTTATTATTA-TAATTTATATATTATTTTATTTTTTAATATATTTTTTATATTATAT
1 TATTTTTATTT-TTATTATTAATTTATATATAATATCATTTCTTAATATATTTTTAATATCATAT
2063242 ATTT
65 ATTT
*
2063246 TATTTTAATTT
1 TATTTTTATTT
2063257 GTTTACCTAT
Statistics
Matches: 68, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
68 54 0.79
69 14 0.21
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (68 bp):
TATTTTTATTTTTATTATTAATTTATATATAATATCATTTCTTAATATATTTTTAATATCATATA
TTT
Found at i:2063208 original size:17 final size:16
Alignment explanation
Indices: 2062779--2063245 Score: 116
Period size: 17 Copynumber: 29.5 Consensus size: 16
2062769 TTTAATATAT
2062779 TTATATTT-T-TATTA
1 TTATATTTATATATTA
* *
2062793 TTAATTTTTATATAATA
1 TT-ATATTTATATATTA
* * *
2062810 TCATTTCTTAAATATT-
1 TTATAT-TTATATATTA
* *
2062826 TTAATATCATATATTTTA
1 TT-ATAT-TTATATATTA
*
2062844 TTTTATTTAT-TATTA
1 TTATATTTATATATTA
*
2062859 TAATATTT-TATATT-
1 TTATATTTATATATTA
*
2062873 TTATTTTTAATATATT-
1 TTATATTT-ATATATTA
2062889 TTATATTT-T-TATTA
1 TTATATTTATATATTA
* *
2062903 TTAATTTTTATATAATA
1 TT-ATATTTATATATTA
* * *
2062920 TCATTTCTTAAATATATTT
1 TTATAT-TT--ATATATTA
*
2062939 TTA-ATGTCATATATTTTA
1 TTATAT-T--TATATATTA
*
2062957 TTTTATTTAT-TATTA
1 TTATATTTATATATTA
2062972 TAATATATTTATAT-TTA
1 T--TATATTTATATATTA
2062989 TT-T-TTTA-ATA-TA
1 TTATATTTATATATTA
2063001 TTTATATTT-T-TATTA
1 -TTATATTTATATATTA
*
2063016 TTA-ATTTTATATAATA
1 TTATA-TTTATATATTA
* * *
2063032 TCATTTCTTAAATATATTT
1 TTATAT-TT--ATATATTA
*
2063051 TTA-ATGTCATATATT-
1 TTATAT-TTATATATTA
*
2063066 TTAT-TTTATTTATTA
1 TTATATTTATATATTA
*
2063081 TTATAATATTTTATATT-
1 TTAT-AT-TTATATATTA
*
2063098 TTATTTTTA-ATA-TA
1 TTATATTTATATATTA
2063112 TTTATATTT-T-TATTA
1 -TTATATTTATATATTA
* *
2063127 TTAATTTTTATATAATA
1 TT-ATATTTATATATTA
* * * *
2063144 TCATTTCTTAAATATTT
1 TTATAT-TTATATATTA
* *
2063161 TTAAATATCATATATT-
1 TTATAT-TTATATATTA
* *
2063177 TTATTTTTATTTATTA
1 TTATATTTATATATTA
2063193 TTATAATTTATATATTA
1 TTAT-ATTTATATATTA
* * *
2063210 TTTTATTT-TTTAATA
1 TTATATTTATATATTA
*
2063225 -TAT-TTTTTATATTA
1 TTATATTTATATATTA
2063239 -TATATTT
1 TTATATTT
2063246 TATTTTAATT
Statistics
Matches: 330, Mismatches: 71, Indels: 103
0.65 0.14 0.20
Matches are distributed among these distances:
12 4 0.01
13 15 0.05
14 46 0.14
15 75 0.23
16 62 0.19
17 86 0.26
18 23 0.07
19 18 0.05
20 1 0.00
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (16 bp):
TTATATTTATATATTA
Found at i:2063214 original size:29 final size:29
Alignment explanation
Indices: 2062948--2063239 Score: 104
Period size: 27 Copynumber: 10.3 Consensus size: 29
2062938 TTTAATGTCA
* *
2062948 TATATTTTATTTTATTTATTATTATAA--
1 TATATATTATTTTATTTATTAATATAATT
*
2062975 TATAT-TTATATTTATTTTTTAATAT-ATT
1 TATATATTAT-TTTATTTATTAATATAATT
* *
2063003 TATATTTTTATTATTAATTTTATATAATATCATT
1 TATA-TATTATT-TT-A-TTTAT-TAATATAATT
* * * * *
2063037 TCT-TA--AATATATTT-TTAATGTCA--
1 TATATATTATTTTATTTATTAATATAATT
* *
2063060 TATATTTTATTTTATTTATTATTATAATAT
1 TATATATTATTTTATTTATTAATATAAT-T
2063090 T-T-TA-TATTTTATTT-TTAATAT-ATT
1 TATATATTATTTTATTTATTAATATAATT
*
2063114 TATATTTTTATTATTAATTT-TT-ATATAATAT
1 TATA-TATTATT-TT-ATTTATTAATATAAT-T
* * * ** *
2063145 CATTTCTTA-AATATTT-TTAA-AT-ATCA
1 TATATATTATTTTATTTATTAATATAAT-T
* *
2063171 TATATTTTATTTTTATTTATTATTATAATT
1 TATATATTA-TTTTATTTATTAATATAATT
* *
2063201 TATATATTATTTTATTTTTTAATATATTT
1 TATATATTATTTTATTTATTAATATAATT
*
2063230 TTTATATTAT
1 TATATATTAT
2063240 ATATTTTATT
Statistics
Matches: 197, Mismatches: 37, Indels: 60
0.67 0.13 0.20
Matches are distributed among these distances:
23 2 0.01
24 3 0.02
25 10 0.05
26 27 0.14
27 46 0.23
28 17 0.09
29 39 0.20
30 31 0.16
31 6 0.03
32 5 0.03
33 6 0.03
34 5 0.03
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.64
Consensus pattern (29 bp):
TATATATTATTTTATTTATTAATATAATT
Done.