Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399457.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2720.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1949
ACGTcount: A:0.21, C:0.08, G:0.06, T:0.22

Warning! 849 characters in sequence are not A, C, G, or T


Found at i:834 original size:172 final size:160

Alignment explanation


    Indices: 623--939  Score: 284
    Period size: 170  Copynumber: 1.9  Consensus size: 160

        613 NNNNNNNNNN

                                                *                            
        623 AATCTCATAATTAATTTTAAGTTCAATTATTTTTATTTTTTTGATTAAAACAGAATATAATT-GA
          1 AATCTCATAATTAATTTTAAGTTCAATTA--TTTATATTTTTGATTAAAACAGAATATAATTAG-

                 **            * *                                     *     
        687 ATATCTGCATCA-AGAAACGTGAAGA-AAAATACATTCATTGCCAAGAAAAGTCCATTTCTAGCC
         63 ATATCCACAT-AGAGAAACATAAAGAGAAAAT-CATTCATTGCCAAGAAAAGTCCATTTATAGCC

                                                          
        750 ACGC-ATTCCTTCAAAAGCCTTATTACTCACTTTNNNNNNNNNNAT
        126 AC-CTATTCCTTCAAAAGCCTTATTACTCACTTT----------AT

                        *      *   *                  *          * *         
        795 AATCTCATAATTGATTTTAGGTTGAATT-TTTAATATTTTTGGTTAAAACAGACTGTAATTAGAT
          1 AATCTCATAATTAATTTTAAGTTCAATTATTT-ATATTTTTGATTAAAACAGAATATAATTAGAT

            *     *                    * *        *                    *     
        859 GTCCACGTAGAGAAACATAAAGAGAAAGTTATTCATTGGCAAGAAAAGTCCATTTATAGTCACCT
         65 ATCCACATAGAGAAACATAAAGAGAAAATCATTCATTGCCAAGAAAAGTCCATTTATAGCCACCT

                            
        924 ATTCCTTCAAAAGCCT
        130 ATTCCTTCAAAAGCCT

        940 NNNNNNNNNN


Statistics
Matches: 122,  Mismatches: 18, Indels: 12
        0.80            0.12        0.08

Matches are distributed among these distances:
 169    5  0.04
 170   87  0.71
 171    5  0.04
 172   25  0.20

ACGTcount: A:0.36, C:0.15, G:0.12, T:0.34


Consensus pattern (160 bp):   
AATCTCATAATTAATTTTAAGTTCAATTATTTATATTTTTGATTAAAACAGAATATAATTAGATA
TCCACATAGAGAAACATAAAGAGAAAATCATTCATTGCCAAGAAAAGTCCATTTATAGCCACCTA
TTCCTTCAAAAGCCTTATTACTCACTTTAT
Done.