Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399458.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2721.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2662
ACGTcount: A:0.13, C:0.06, G:0.04, T:0.18

Warning! 1550 characters in sequence are not A, C, G, or T


Found at i:2357 original size:59 final size:59

Alignment explanation


    Indices: 2252--2384  Score: 194
    Period size: 59  Copynumber: 2.3  Consensus size: 59

       2242 AAACAAGTTT

                                                 *   *                 
       2252 GATTTAAAAATTGAAATTCTTAGACTTGACCTAGGCTTGACTTATATAAAAATAGGTTC
          1 GATTTAAAAATTGAAATTCTTAGACTTGACCTAGGCTCGACCTATATAAAAATAGGTTC

                              *          *  *              *          *
       2311 GATTTAAAAATTGAAATTTTTAGACTTGATCTTGGCTCGACCTATATTAAAATAGGTTT
          1 GATTTAAAAATTGAAATTCTTAGACTTGACCTAGGCTCGACCTATATAAAAATAGGTTC

                 *         
       2370 GATTTGAAAATTGAA
          1 GATTTAAAAATTGAA

       2385 NNNNNNNNNN


Statistics
Matches: 66,  Mismatches: 8, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  59   66  1.00

ACGTcount: A:0.37, C:0.10, G:0.16, T:0.38


Consensus pattern (59 bp):   
GATTTAAAAATTGAAATTCTTAGACTTGACCTAGGCTCGACCTATATAAAAATAGGTTC
Done.