Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399464.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2727.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2606
ACGTcount: A:0.16, C:0.07, G:0.06, T:0.16

Warning! 1423 characters in sequence are not A, C, G, or T


Found at i:2575 original size:33 final size:33

Alignment explanation


    Indices: 2537--2604  Score: 95
    Period size: 33  Copynumber: 2.1  Consensus size: 33

       2527 TTTATACTAT

                                               
       2537 TATAAT-TAA-AATAAAGAATATTAAAATAAAATA
          1 TATAATATAAGAATAAA-AA-ATTAAAATAAAATA

                          *                  
       2570 TATAATATAAGAATCAAAAATTAAAATAAAATA
          1 TATAATATAAGAATAAAAAATTAAAATAAAATA

              
       2603 TA
          1 TA

       2605 AA


Statistics
Matches: 32,  Mismatches: 1, Indels: 4
        0.86            0.03        0.11

Matches are distributed among these distances:
  33   22  0.69
  34    5  0.16
  35    5  0.16

ACGTcount: A:0.66, C:0.01, G:0.03, T:0.29


Consensus pattern (33 bp):   
TATAATATAAGAATAAAAAATTAAAATAAAATA

Found at i:2576 original size:20 final size:21

Alignment explanation


    Indices: 2529--2577  Score: 55
    Period size: 20  Copynumber: 2.4  Consensus size: 21

       2519 CAAAATATTT

                *        *       
       2529 TATACTATTATAATTAAAATA
          1 TATAATATTATAAATAAAATA

            * *                  
       2550 AAGAATATTA-AAATAAAATA
          1 TATAATATTATAAATAAAATA

                    
       2570 TATAATAT
          1 TATAATAT

       2578 AAGAATCAAA


Statistics
Matches: 22,  Mismatches: 6, Indels: 1
        0.76            0.21        0.03

Matches are distributed among these distances:
  20   15  0.68
  21    7  0.32

ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37


Consensus pattern (21 bp):   
TATAATATTATAAATAAAATA
Done.