Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399471.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2733.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3291
ACGTcount: A:0.23, C:0.09, G:0.09, T:0.23

Warning! 1133 characters in sequence are not A, C, G, or T


Found at i:1052 original size:172 final size:163

Alignment explanation


    Indices: 775--1107  Score: 312
    Period size: 172  Copynumber: 2.0  Consensus size: 163

        765 AATTTGAATT

                                   *             *             * *           
        775 CTTTGTACATTTTTGGTTAAAAATGACTATAATTGAATGTCAACGTCAAGACATATGAAGGAAAA
          1 CTTTGTACATTTTTGGTTAAAAAAGACTATAATTGAAAGTCAACGTCAAGAAACATGAAGGAAAA

                 *     *       **  *         *                     *      *  
        840 GGCATTCATTGGCAAGAAATGTCTATTAATAGTTGCCCA-TTCCTTTAAAAGCCTTATTACTTAC
         66 GGCATACATTGACAAGAAAAATCCATTAATAGTCGCCCATTTCCTTTAAAAGCCTCATTACTCAC

                    *                         
        904 TATAAATGGTTTTATAAT-CTCAAAATTGATTGA
        131 TATAAATGATTTTATAATGC-CAAAATTGATTGA

                             *                   *                *    *     
        937 NNNNNNNNNNCTTTGTATATTTTTAGG-TAAAAAAGATTATAATTGAAAGTCAATGTCATGAAAC
          1 ----------CTTTGTACATTTTT-GGTTAAAAAAGACTATAATTGAAAGTCAACGTCAAGAAAC

                 *                             *  *              **          
       1001 ATGAATGAAAAGGCATACATTGACAAGAAAAATCCGTTTATAGTCGCCCATTTTTTTTAAAAGCC
         55 ATGAAGGAAAAGGCATACATTGACAAGAAAAATCCATTAATAGTCGCCCATTTCCTTTAAAAGCC

                     *  *                    *        
       1066 TCATTACTCGCTTTAAATGATTTTATAATGCCATAATTGATT
        120 TCATTACTCACTATAAATGATTTTATAATGCCAAAATTGATT

       1108 TTTAGNNNNN


Statistics
Matches: 133,  Mismatches: 25, Indels: 5
        0.82            0.15        0.03

Matches are distributed among these distances:
 172   84  0.63
 173   48  0.36
 174    1  0.01

ACGTcount: A:0.35, C:0.13, G:0.14, T:0.35


Consensus pattern (163 bp):   
CTTTGTACATTTTTGGTTAAAAAAGACTATAATTGAAAGTCAACGTCAAGAAACATGAAGGAAAA
GGCATACATTGACAAGAAAAATCCATTAATAGTCGCCCATTTCCTTTAAAAGCCTCATTACTCAC
TATAAATGATTTTATAATGCCAAAATTGATTGA
Done.