Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399484.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2746.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 705

Length: 1176
ACGTcount: A:0.31, C:0.09, G:0.11, T:0.30

Warning! 217 characters in sequence are not A, C, G, or T


Found at i:1070 original size:172 final size:161

Alignment explanation


    Indices: 847--1170  Score: 330
    Period size: 172  Copynumber: 1.9  Consensus size: 161

        837 AAAACCATTC

                                *           *                        *       
        847 AAAGTGTATAATAACGCTTTTGAAGGAATAGGTGACTATAAATTAACTTTTCTTGA-TAATAAAT
          1 AAAGTGTATAATAACGCTTTCGAAGGAATAGGAGACTATAAATTAACTTTTCTT-ACCAATAAAT

                    *     *        **              *                    *    
        911 ACTTTTTTGTTCACGTTTCTTGAGTTAAACATTCAAATATTGTCTGTTTTAATCAAAAATGTAAA
         65 ACTTTTTTCTTCACATTTCTTGAAATAAACATTCAAATAATGTCTGTTTTAATCAAAAATATAAA

                                                       
        976 AAAAAATAACCTTAAAATCAATTACGATATNNNNNNNNNNTTT
        130 AAAAAATAA-CTTAAAATCAATTACGATAT----------TTT

                           *            *      *  *                       *  
       1019 AAAGTG-AGTAATAAGGCTTTCGAAGGAGTAGGAGGCTTTAAA-TAGACTTTTCTTACCAATCAA
          1 AAAGTGTA-TAATAACGCTTTCGAAGGAATAGGAGACTATAAATTA-ACTTTTCTTACCAATAAA

             *                          *        *                           
       1082 TGCTTTTTTCTTCACATTTCTTGAAATAGACATTCAATTAATGTCTGTTTTAATCAAAAATATAA
         64 TACTTTTTTCTTCACATTTCTTGAAATAAACATTCAAATAATGTCTGTTTTAATCAAAAATATAA

                 **                 
       1147 AAAAACTTAACTTAAAATCAATTA
        129 AAAAAAATAACTTAAAATCAATTA

       1171 TTAGAT


Statistics
Matches: 130,  Mismatches: 19, Indels: 7
        0.83            0.12        0.04

Matches are distributed among these distances:
 171   18  0.14
 172  112  0.86

ACGTcount: A:0.38, C:0.11, G:0.11, T:0.36


Consensus pattern (161 bp):   
AAAGTGTATAATAACGCTTTCGAAGGAATAGGAGACTATAAATTAACTTTTCTTACCAATAAATA
CTTTTTTCTTCACATTTCTTGAAATAAACATTCAAATAATGTCTGTTTTAATCAAAAATATAAAA
AAAAATAACTTAAAATCAATTACGATATTTT
Done.