Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018399499.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_276.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24747
ACGTcount: A:0.24, C:0.08, G:0.08, T:0.24
Warning! 8710 characters in sequence are not A, C, G, or T
Found at i:866 original size:343 final size:342
Alignment explanation
Indices: 401--1273 Score: 896
Period size: 343 Copynumber: 2.5 Consensus size: 342
391 NNNNNNNNNN
* * * *
401 TCAAAAGTCTTATTACTCGCTTTAAAAGGTTCTATAATCTCATAATTGATTTTAAGTTAATTTTT
1 TCAAAAGCCTTATTACTCACTTTAAAAGGTTTTATAATCTCATAATTGATTTTAAGTTAA-ATTT
** * * * * * *
466 TTTTACATTTTTAGTTAAAAAAGGCTAAAATTGAAT-ACTACCTTGGGGAATGTGAAGAAAAAGG
65 TTTTACATTTTTAGTTAAAAAAGATTATAATTGAATGTCTACCTTGAGAAACGTGAAGAAAAAGA
* *
530 CATTTATTGGCAGGAAAAGT-T-TTGTGACAGTCACTTATTCGTTTAAAAGCCTTATTACCCACT
130 CATTTATTGGCAAGAAAAGTCTATT-T-ACAGTCACCTATTCGTTTAAAAGCCTTATTACCCACT
* * *
593 TTAAATGATTTTTTAAT-TTCAAAATTGATTTTAAGTTGAATTCTTTATATATTTT-TAGTTAAA
193 TTAAAAGATTTTATAATCTT-AAAATTGATTTTAAGTTGAATT-TTTATACATTTTCT-GTTAAA
* * * * *
656 AC-AGATTATAATTGAATGTCTACCTCAAGAAACCTCAAGAAAAAGGCATTCATTGGCAAAAAAA
255 ACTA-ATTATAATTGAATGCCTACCACAAGAAACCTCAAGAAAAAGACATGCATTGACAAAAAAA
* * *
720 CTCCATTTATTGTCACTCATTTCT
319 CTCCATTTATAGTCACCCATTCCT
* * *
744 TCAAAAGCCTTATTATTCACATTAAAAGGTTTTATAATCTCATAATTGATTTTAAGTGAAATTTT
1 TCAAAAGCCTTATTACTCACTTTAAAAGGTTTTATAATCTCATAATTGATTTTAAGTTAAATTTT
* * * ** *
809 TTTACAATTTTT-GTTAAAACAGATTATAATAGAATGTTTGTCTTGAGCAACGTGAAGAAAAAGA
66 TTTAC-ATTTTTAGTTAAAAAAGATTATAATTGAATGTCTACCTTGAGAAACGTGAAGAAAAAGA
* * * * * * *
873 TATTCATTGACAAGAAAAGTCTATTTATAGTCACCTATTCTTTTAAAAGCTTTATTACTCACTTT
130 CATTTATTGGCAAGAAAAGTCTATTTACAGTCACCTATTCGTTTAAAAGCCTTATTACCCACTTT
* *********** * *
938 AAAAGGTTTTATAATCTTATNNNNNNNNNNAAGTTGTATTTTTTTACATTTTCTGTTAAAACTAA
195 AAAAGATTTTATAATCTTAAAATTGATTTTAAGTTGAATTTTTATACATTTTCTGTTAAAACTAA
* * * * * * *
1003 TTATAATTGGATGCCTACCACTAGAAACGTGAAGAAAAAGATATGCATTGACAAGAAAAGTCCAT
260 TTATAATTGAATGCCTACCACAAGAAACCTCAAGAAAAAGACATGCATTGACAAAAAAACTCCAT
1068 TTATAGTCACCCATTCCT
325 TTATAGTCACCCATTCCT
* * * * * * *
1086 TCAAAAGCTTTATGACTCCCTTTAAAGGGTTTTATATTCTCAAAATTGATTTTAAGTTTAATTTG
1 TCAAAAGCCTTATTACTCACTTTAAAAGGTTTTATAATCTCATAATTGATTTTAAGTTAAATTT-
* * * * *
1151 TTTTACATTTTTATTTAAAATAGATTATAATTGATTGTCTACCTTTAGAAACATGAAGAAAAAGA
65 TTTTACATTTTTAGTTAAAAAAGATTATAATTGAATGTCTACCTTGAGAAACGTGAAGAAAAAGA
* * * * * *
1216 CATTTATTGGCAAGAAAAGTCAATTTATAATCACCCATTCCTTCAAAAGCCTTATTAC
130 CATTTATTGGCAAGAAAAGTCTATTTACAGTCACCTATTCGTTTAAAAGCCTTATTAC
1274 TCGCTTNNNN
Statistics
Matches: 431, Mismatches: 90, Indels: 18
0.80 0.17 0.03
Matches are distributed among these distances:
342 174 0.40
343 251 0.58
344 4 0.01
345 2 0.00
ACGTcount: A:0.36, C:0.13, G:0.12, T:0.38
Consensus pattern (342 bp):
TCAAAAGCCTTATTACTCACTTTAAAAGGTTTTATAATCTCATAATTGATTTTAAGTTAAATTTT
TTTACATTTTTAGTTAAAAAAGATTATAATTGAATGTCTACCTTGAGAAACGTGAAGAAAAAGAC
ATTTATTGGCAAGAAAAGTCTATTTACAGTCACCTATTCGTTTAAAAGCCTTATTACCCACTTTA
AAAGATTTTATAATCTTAAAATTGATTTTAAGTTGAATTTTTATACATTTTCTGTTAAAACTAAT
TATAATTGAATGCCTACCACAAGAAACCTCAAGAAAAAGACATGCATTGACAAAAAAACTCCATT
TATAGTCACCCATTCCT
Found at i:880 original size:171 final size:170
Alignment explanation
Indices: 401--1275 Score: 794
Period size: 171 Copynumber: 5.1 Consensus size: 170
391 NNNNNNNNNN
* * * *
401 TCAAAAGTCTTATTACTCGCTTTAAAAGGTTCTATAATCTCATAATTGATTTTAAGTT-AATTTT
1 TCAAAAGCCTTATTACTCACTTTAAAAGGTTTTATAATCTCAAAATTGATTTTAAGTTGAA--TT
* ** * * * * *
465 TTTTTACATTTTTAGTTAAAAAAGGCTAAAATTGAAT-ACTACCTTGGGGAATGTGAAGAAAAAG
64 TTTTTACATTTTTAGTTAAAACAGATTATAATTGAATGTCTACCTT-AGAAACGTGAAGAAAAAG
* * * * * * ** *
529 GCATTTATTGGCAGGAAAAGT--TTTGTGACAGTCACTTATTCGT
128 ACATTCATTGACAAGAAAAGTCCATT-T-ATAGTCACCCATTCCT
* * * * * *
572 TTAAAAGCCTTATTACCCACTTTAAATGATTTTTTAATTTCAAAATTGATTTTAAGTTGAATTCT
1 TCAAAAGCCTTATTACTCACTTTAAAAGGTTTTATAATCTCAAAATTGATTTTAAGTTGAATT-T
* * * * * *
637 TTATATATTTTTAGTTAAAACAGATTATAATTGAATGTCTACCTCAAGAAACCTCAAGAAAAAGG
65 TTTTACATTTTTAGTTAAAACAGATTATAATTGAATGTCTACCT-TAGAAACGTGAAGAAAAAGA
* * * * * *
702 CATTCATTGGCAAAAAAACTCCATTTATTGTCACTCATTTCT
129 CATTCATTGACAAGAAAAGTCCATTTATAGTCACCCATTCCT
* * *
744 TCAAAAGCCTTATTATTCACATTAAAAGGTTTTATAATCTCATAATTGATTTTAAG-TGAAATTT
1 TCAAAAGCCTTATTACTCACTTTAAAAGGTTTTATAATCTCAAAATTGATTTTAAGTTG-AATTT
* * ** *
808 TTTTACAATTTTT-GTTAAAACAGATTATAATAGAATGTTTGTCTTGAGCAACGTGAAGAAAAAG
65 TTTTAC-ATTTTTAGTTAAAACAGATTATAATTGAATGTCTACCTT-AGAAACGTGAAGAAAAAG
* * * *
872 ATATTCATTGACAAGAAAAGTCTATTTATAGTCACCTATTCTT
128 ACATTCATTGACAAGAAAAGTCCATTTATAGTCACCCATTCCT
* * * *********** *
915 TTAAAAGCTTTATTACTCACTTTAAAAGGTTTTATAATCTTATNNNNNNNNNNAAGTTGTATTTT
1 TCAAAAGCCTTATTACTCACTTTAAAAGGTTTTATAATCTCAAAATTGATTTTAAGTTGAATTTT
* * *
980 TTTACATTTTCT-GTTAAAACTA-ATTATAATTGGATGCCTACCACTAGAAACGTGAAGAAAAAG
66 TTTACATTTT-TAGTTAAAAC-AGATTATAATTGAATGTCTACC-TTAGAAACGTGAAGAAAAAG
* *
1043 ATATGCATTGACAAGAAAAGTCCATTTATAGTCACCCATTCCT
128 ACATTCATTGACAAGAAAAGTCCATTTATAGTCACCCATTCCT
* * * * * *
1086 TCAAAAGCTTTATGACTCCCTTTAAAGGGTTTTATATTCTCAAAATTGATTTTAAGTTTAATTTG
1 TCAAAAGCCTTATTACTCACTTTAAAAGGTTTTATAATCTCAAAATTGATTTTAAGTTGAATTT-
* * * *
1151 TTTTACATTTTTATTTAAAATAGATTATAATTGATTGTCTACCTTTAGAAACATGAAGAAAAAGA
65 TTTTACATTTTTAGTTAAAACAGATTATAATTGAATGTCTACC-TTAGAAACGTGAAGAAAAAGA
* * * *
1216 CATTTATTGGCAAGAAAAGTCAATTTATAATCACCCATTCCT
129 CATTCATTGACAAGAAAAGTCCATTTATAGTCACCCATTCCT
1258 TCAAAAGCCTTATTACTC
1 TCAAAAGCCTTATTACTC
1276 GCTTNNNNNN
Statistics
Matches: 562, Mismatches: 126, Indels: 31
0.78 0.18 0.04
Matches are distributed among these distances:
170 7 0.01
171 337 0.60
172 215 0.38
173 1 0.00
174 2 0.00
ACGTcount: A:0.36, C:0.13, G:0.12, T:0.38
Consensus pattern (170 bp):
TCAAAAGCCTTATTACTCACTTTAAAAGGTTTTATAATCTCAAAATTGATTTTAAGTTGAATTTT
TTTACATTTTTAGTTAAAACAGATTATAATTGAATGTCTACCTTAGAAACGTGAAGAAAAAGACA
TTCATTGACAAGAAAAGTCCATTTATAGTCACCCATTCCT
Found at i:2931 original size:171 final size:166
Alignment explanation
Indices: 2638--3083 Score: 511
Period size: 170 Copynumber: 2.6 Consensus size: 166
2628 NNNNNNNNNN
* * *
2638 TTGACAAGAAAAGTCCATTGATAGTCACTCATTCTTTCAAAAGCCTTATTACTAGCTCTAAAAGG
1 TTGACAAGAAAAGTCCATT-ATAGTCACCCATTCCTTCAAAAGCCTTA-TACTA-CTTTAAAAGG
* * *
2703 TTTTATAATCTTATAATTGATTTTAAGTTATATTTTTTTACATTTCCTGTTAAAAAAAATTATAA
63 TTTTATAATCTCATAATTGATTTTAAGTTAT-TTTTTTTA-TTTTCATGTTAAAAAAAATTATAA
* * **
2768 TTGAATGTCTACCTCT-AGCAA-CATGAAGAAAAAGGTATTCA
126 TTGAATGTCTACCT-TGAGAAATC-TAAAGAAAAAGACATTCA
* * * * *
2809 TTGACGAGAAAAGTCCATATATAGTCACCCATTCCTTAAAAAACCTTATGAGTCACTTTAAATGG
1 TTGACAAGAAAAGTCCAT-TATAGTCACCCATTCCTTCAAAAGCCTTAT-ACT-ACTTTAAAAGG
* * * *
2874 TTTTTTATTCTCAAAATTAATTTTAAGTTCAATTTTTTTTATTTTCAT-TTAAAAAAAATTATAA
63 TTTTATAATCTCATAATTGATTTTAAGTT--ATTTTTTTTATTTTCATGTTAAAAAAAATTATAA
*
2938 TTGACTGTCTACCTTGAGAAATCTAAAGAAAAAGACATTCA
126 TTGAATGTCTACCTTGAGAAATCTAAAGAAAAAGACATTCA
* * * * *
2979 TCGGCAAGAAAAGTCCATTTATAGTCACCCATTTCTTCAAAAGTCTTAATACTTGCTTTAAAAGG
1 TTGACAAGAAAAGTCCA-TTATAGTCACCCATTCCTTCAAAAGCCTT-ATAC-TACTTTAAAAGG
3044 TTTTATAATCTCATAATTGATTTTAAGTTATTTTTTTTAT
63 TTTTATAATCTCATAATTGATTTTAAGTTATTTTTTTTAT
3084 ATTNNNNNNN
Statistics
Matches: 231, Mismatches: 34, Indels: 23
0.80 0.12 0.08
Matches are distributed among these distances:
168 11 0.05
169 1 0.00
170 122 0.53
171 85 0.37
172 10 0.04
173 2 0.01
ACGTcount: A:0.36, C:0.14, G:0.10, T:0.39
Consensus pattern (166 bp):
TTGACAAGAAAAGTCCATTATAGTCACCCATTCCTTCAAAAGCCTTATACTACTTTAAAAGGTTT
TATAATCTCATAATTGATTTTAAGTTATTTTTTTTATTTTCATGTTAAAAAAAATTATAATTGAA
TGTCTACCTTGAGAAATCTAAAGAAAAAGACATTCA
Found at i:5047 original size:172 final size:171
Alignment explanation
Indices: 4716--5054 Score: 393
Period size: 172 Copynumber: 2.0 Consensus size: 171
4706 NNNNNNNNNN
** * *
4716 ATTCCTTCAAAAGCCTTATTACTCGCTTTAAAAGATTTTATAATCTCATAATTAGTTTGAAGTTG
1 ATTCCTTCAAAAGCCTTAGGACTCGCTTTAAAAGATTTTATAATCTCAAAATTAGTTTGAAGTTA
* * * * *
4781 AGTTTTTTCATATTTTTTGTTAAAACAGATTATAATTGAATGCTTGCAGTGGTAAATGTGAAAAA
66 AGTTTTTTCACATTTTATGTCAAAACAAATTATAATTGAATGCTTGCACTGGTAAATGTGAAAAA
*
4846 AAAGATATTCATTGACAAGAAAAGTCCATTTATAGTCTCCC
131 AAAGACATTCATTGACAAGAAAAGTCCATTTATAGTCTCCC
* * *
4887 ATTCCTTCAAAAGCCTTAGGACTCGCTTTAAATGGTTTTATATTCTCAAAATT-GATTTGAAGTT
1 ATTCCTTCAAAAGCCTTAGGACTCGCTTTAAAAGATTTTATAATCTCAAAATTAG-TTTGAAG-T
* * * *
4951 TAATTTTTTTTACATTTTCAT-TCAAAACAAATTATAATTGACTG-TCT-CCCTCGAG-AAATGT
64 TAAGTTTTTTCACATTTT-ATGTCAAAACAAATTATAATTGAATGCT-TGCACT-G-GTAAATGT
* **
5012 GAAGAAAAAGACATTCATTG-GTAGAAAAAGTCCATTTATAGTC
125 GAAAAAAAAGACATTCATTGACAAG-AAAAGTCCATTTATAGTC
5055 ACCNNNNNNN
Statistics
Matches: 141, Mismatches: 20, Indels: 13
0.81 0.11 0.07
Matches are distributed among these distances:
170 1 0.01
171 59 0.42
172 79 0.56
173 2 0.01
ACGTcount: A:0.35, C:0.14, G:0.13, T:0.38
Consensus pattern (171 bp):
ATTCCTTCAAAAGCCTTAGGACTCGCTTTAAAAGATTTTATAATCTCAAAATTAGTTTGAAGTTA
AGTTTTTTCACATTTTATGTCAAAACAAATTATAATTGAATGCTTGCACTGGTAAATGTGAAAAA
AAAGACATTCATTGACAAGAAAAGTCCATTTATAGTCTCCC
Found at i:5728 original size:172 final size:171
Alignment explanation
Indices: 5374--7066 Score: 1032
Period size: 172 Copynumber: 9.9 Consensus size: 171
5364 NNNNNNNNNN
* * ** *
5374 ATTGATTTTAAGTTGAATTTTTTTTATATTTTT-TATTAAAATAGATTATAATTGTGTGTCT-GC
1 ATTGATTTTAAGTTGAATTTTTTTTACATTTTTAT-TTAAAACAGATTATAATTGAATGTCTACC
* *** * *
5437 CTCAAGAAACGTGAAGAAAAAAATATTCATTGGTAAGAAAAATCTATTTATAGTCACCCATTCTT
65 CT-GAGAAACGTGAAGAAAAAGGCATTCATTGGCAAGAAAAGTC-ATTTATAGTCACCCATTCTT
* * * * **
5502 TTAAAAGCCTTATTACTCGCTTTAAATAG-TTATATATTTTTTAA
128 TCAAAAGCCTTATTACTCGCTTTAAA-AGATTTTATAATCTCAAA
* * ** ** * * *
5546 ATTTATTTTAAGTTAAATTTTTTTTGTATTTGCATTTAAAACAGAGTATAATTGATTGTTTACCC
1 ATTGATTTTAAGTTGAATTTTTTTTACATTTTTATTTAAAACAGATTATAATTGAATGTCTACCC
* * * * *
5611 TAAGAAACATGAAGAAAAAGGTATTTATTGGCAAGAAGAGCTCATTTATAGTCACCCATTCTTTC
66 TGAGAAACGTGAAGAAAAAGGCATTCATTGGCAAGAAAAG-TCATTTATAGTCACCCATTCTTTC
* *
5676 AAAAGCCTTATTACTCGCTTTAAAAGATTTTACATTCTCAAA
130 AAAAGCCTTATTACTCGCTTTAAAAGATTTTATAATCTCAAA
* ** * * * * * * *
5718 ATTGATTTTAAATTTTA-TTTTTTTGCATTTTTGTGTAAAAAAAATTATAATTGACTATCTA-CC
1 ATTGATTTTAAGTTGAATTTTTTTTACATTTTTATTTAAAACAGATTATAATTGAATGTCTACCC
** * * * * * *
5781 TCGAGAAATATAAAG-AAAAGGCATTCATTAGTAAGAAAATTCTATTTATAGTTTACCTATTCCT
66 T-GAGAAACGTGAAGAAAAAGGCATTCATTGGCAAGAAAAGTC-ATTTATAG-TCACCCATT-CT
* * * * * **
5845 TT-AAAAGTCTTATTACTCACTTTAAATGGTATTATAATCTCANN
127 TTCAAAAGCCTTATTACTCGCTTTAAAAGATTTTATAATCTCAAA
******** * * * **
5889 NNNNNNNNTAATTTGAATTCTTTGTATC-TTTTTAAATAAAACAGATTATAATTGAATGTCTA-C
1 ATTGATTTTAAGTTGAATTTTTTTTA-CATTTTTATTTAAAACAGATTATAATTGAATGTCTACC
* ** * * * *
5952 CTCGAGAAACATGAA-AAAAATAACATTTATTGAG-AAAAAAAGTCCATTTATAGGCACCTATTC
65 CT-GAGAAACGTGAAGAAAAA-GGCATTCATTG-GCAAGAAAAGT-CATTTATAGTCACCCATTC
* * **
6015 ATTT-AAAGGCTTTATTACTCGCTTTAAAAGATTTTATAATCTCTTA
126 -TTTCAAAAGCCTTATTACTCGCTTTAAAAGATTTTATAATCTCAAA
* * ** * *
6061 ATTGATTTTAAGGTG-ATTTTTTTTACATTTTTAGTTTAAGA-AGGCTATGAA-TGAATGTTTGC
1 ATTGATTTTAAGTTGAATTTTTTTTACATTTTTA-TTTAAAACAGATTAT-AATTGAATGTCTAC
** * * * * ** * * * ** *
6123 ATTGGGGAATGTAAAGGGAAAGGCATTTATTGGCAATAAAAGTTTATTTATAGTCACTTATTCCT
64 CCTGAGAAACGTGAAGAAAAAGGCATTCATTGGCAAGAAAAG-TCATTTATAGTCACCCATTCTT
**********
6188 TCAAAAGCCTTATTACTCGCTTTAAAAGATTTTANNNNNNNNNN
128 TCAAAAGCCTTATTACTCGCTTTAAAAGATTTTATAATCTCAAA
***** * * *
6232 NNNNNTTTTAAGTTGAA-TTTTTTTACATTTTT-GTTAAAACAGATTATAATTGAATGCCT-GCC
1 ATTGATTTTAAGTTGAATTTTTTTTACATTTTTATTTAAAACAGATTATAATTGAATGTCTACCC
* * *** * * *
6294 TCAGTAAATGTGAAGAAAAATATATTCATTGACAAGAAAAGTCTATTTATAGTCACCCGTTCCTT
66 TGAG-AAACGTGAAGAAAAAGGCATTCATTGGCAAGAAAAGTC-ATTTATAGTCACCCATTCTTT
* * * *
6359 CAAAAGCCTTATAACTCGCTTTAAATGGTTTTATATTCTCAAA
129 CAAAAGCCTTATTACTCGCTTTAAAAGATTTTATAATCTCAAA
* * * * * * *
6402 ATTTAGTTTAAGTTTAATTTTTTTTACATTTTCATTTAAAATAGATTATAATTGACTATCT-CCC
1 ATTGATTTTAAGTTGAATTTTTTTTACATTTTTATTTAAAACAGATTATAATTGAATGTCTACCC
* *
6466 TTGAGAAATGTGAAGAAAAAGAG-ATTCATTGGTAAGAAAAGTCTATTTATAGTCACCCATT-TC
66 -TGAGAAACGTGAAGAAAAAG-GCATTCATTGGCAAGAAAAGTC-ATTTATAGTCACCCATTCT-
** * * *
6529 TTCAAAAAACTTGTTACTTGCTTTAAAAGATTTTATATTCTCAAA
127 TTCAAAAGCCTTATTACTCGCTTTAAAAGATTTTATAATCTCAAA
* * * * * ********** * * *
6574 CTTAATTTTAAGTTCAATTGTTTTTGCANNNNNNNNNNAAACAAATTATAATTGACTGTCTACCT
1 ATTGATTTTAAGTTGAATTTTTTTTACATTTTTATTTAAAACAGATTATAATTGAATGTCTACCC
* * * * * * * *
6639 TAATAAACATAAAGAAAAAGGCATTTATTGACAAAAAAAAGTCCATTTATAGTAACCCATTCCTT
66 TGAGAAACGTGAAGAAAAAGGCATTCATTGGC-AAGAAAAGT-CATTTATAGTCACCCATT-CTT
** * * * *
6704 T-AAAAATCTTATTACTTGCTTTAAAGGGTATTATAATCTCAAA
128 TCAAAAGCCTTATTACTCGCTTTAAAAGATTTTATAATCTCAAA
* * * * * * * *
6747 ATTTATTTTAATTTAAATTCTTTGTATATTTTTATATAAAA-AAATTATAATTGAATGTCTA-CC
1 ATTGATTTTAAGTTGAATTTTTTTTACATTTTTATTTAAAACAGATTATAATTGAATGTCTACCC
* * * **
6810 TCGAGAAACGTGAAGAAAATGACATAT-ATTGAG-AAGAAAAGTCCATTTATAGGCACTTATTCC
66 T-GAGAAACGTGAAGAAAAAGGCAT-TCATTG-GCAAGAAAAGT-CATTTATAGTCACCCATT-C
* * *
6873 TTT-AAAAGCCTTATTACTCGCTTCAAAAGATTTTATAATCTTATA
126 TTTCAAAAGCCTTATTACTCGCTTTAAAAGATTTTATAATCTCAAA
* * * * **
6918 ATTGATTTTAAGTTGAA-CTTTATTATATTTTT-TGTTAAAACAGATTATAATTAAATGTCCGCC
1 ATTGATTTTAAGTTGAATTTTTTTTACATTTTTAT-TTAAAACAGATTATAATTGAATGTCTACC
* * * * *
6981 CTGAGAAACGTGAAGAAAAAGGTATTCATTGACAAAAAAAGTCCATTTATAGTCACTCATTTTTT
65 CTGAGAAACGTGAAGAAAAAGGCATTCATTGGCAAGAAAAGT-CATTTATAGTCACCCATTCTTT
7046 CAAAAGCCTTATTACTCGCTT
129 CAAAAGCCTTATTACTCGCTT
7067 NNNNNNNNNN
Statistics
Matches: 1157, Mismatches: 316, Indels: 97
0.74 0.20 0.06
Matches are distributed among these distances:
169 13 0.01
170 150 0.13
171 389 0.34
172 481 0.42
173 118 0.10
174 5 0.00
175 1 0.00
ACGTcount: A:0.36, C:0.12, G:0.11, T:0.39
Consensus pattern (171 bp):
ATTGATTTTAAGTTGAATTTTTTTTACATTTTTATTTAAAACAGATTATAATTGAATGTCTACCC
TGAGAAACGTGAAGAAAAAGGCATTCATTGGCAAGAAAAGTCATTTATAGTCACCCATTCTTTCA
AAAGCCTTATTACTCGCTTTAAAAGATTTTATAATCTCAAA
Found at i:13769 original size:172 final size:172
Alignment explanation
Indices: 13389--13744 Score: 453
Period size: 172 Copynumber: 2.1 Consensus size: 172
13379 NNNNNNNNAA
* * * * *
13389 TTAAAATGAATTTTGAGATTATAATACCATTTAAAGTAAGTAATAAGACTTTTAAGGAAATGGAT
1 TTAAAATCAATTTTGAGAATATAAAACCATTTAAAGCAAGTAATAAGACTTTAAAGGAAATGGAT
* ** * * * * ** * *
13454 GACTATAAATTGATTTTTTTTGTCAATGAATGCCTTTTTCTTTATGTTTCTCAAGGTAGACAGTC
66 GACTATAAATGGACGTTTCTTGCCAATAAATGCCTTTTTCTTCACATTTCCCAAGGGAGACAGTC
* **
13519 AATTATAATTTGTTTTAAATGAAAATGCAAAAAAAATTGAAC
131 AATTATAATATGTTTTAAATGAAAACACAAAAAAAATTGAAC
* * * * *
13561 TTTAAATTAATTTTGAGAATATAAAACCTTTTAAAGCAAGTAATAAGGCTTTGAAAGG-AATGGG
1 TTAAAATCAATTTTGAGAATATAAAACCATTTAAAGCAAGTAATAAGACTTT-AAAGGAAATGGA
*
13625 TGACTATAAATGGACGTTTCTTGCCAATAAATGTCTTTTTCTTCACATTTCCCAAGGGAGACAGT
65 TGACTATAAATGGACGTTTCTTGCCAATAAATGCCTTTTTCTTCACATTTCCCAAGGGAGACAGT
* *
13690 CAATTATAATATGTTTTACATGAAAACATAAAAAAAATTGAAC
130 CAATTATAATATGTTTTAAATGAAAACACAAAAAAAATTGAAC
13733 TTAAAATCAATT
1 TTAAAATCAATT
13745 NNNNNNNNNN
Statistics
Matches: 155, Mismatches: 28, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
172 151 0.97
173 4 0.03
ACGTcount: A:0.40, C:0.10, G:0.14, T:0.36
Consensus pattern (172 bp):
TTAAAATCAATTTTGAGAATATAAAACCATTTAAAGCAAGTAATAAGACTTTAAAGGAAATGGAT
GACTATAAATGGACGTTTCTTGCCAATAAATGCCTTTTTCTTCACATTTCCCAAGGGAGACAGTC
AATTATAATATGTTTTAAATGAAAACACAAAAAAAATTGAAC
Found at i:15201 original size:172 final size:171
Alignment explanation
Indices: 14716--15257 Score: 681
Period size: 171 Copynumber: 3.2 Consensus size: 171
14706 AGAAAATATT
* * *
14716 AACTTAAAATCAATTATGAAATTATAAAAACC-TTTAAAGCGAGTAATAAGACTTTTGAAAGAAT
1 AACTGAAAAGCAATTATGAGATTAT-AAAACCTTTTAAAGCGAGTAATAAGACTTTTGAAAGAAT
* *
14780 GGGTGACTATAAATCGACTTTTCCTATCAATGAATATCTTTTTCTTCACGTTTCACATGGCAAAC
65 GGGTGACTATAAATCGACTTTTCCTATCAATGAATATCTTTTTCTTCACGTTTCACAAGGCAGAC
* *
14845 ATTCAATTATAATCTGTTTTAACAAAAAAAATAAAAAAGTTC
130 ATTCAATTATAATCTATTTTAACAAAAAATATAAAAAAGTTC
* **********
14887 ATCTGAAAAGCAATTATGAGATTATAAAACCTTTTAAAGCGAGTAATANNNNNNNNNNAAGAATG
1 AACTGAAAAGCAATTATGAGATTATAAAACCTTTTAAAGCGAGTAATAAGACTTTTGAAAGAATG
* * * * * * ** *
14952 GGTGACTATAAATGGACTTTTCTTGTCAATGAATATATTTTTCCTCACATTTCTTAAGGTAGACA
66 GGTGACTATAAATCGACTTTTCCTATCAATGAATATCTTTTTCTTCACGTTTCACAAGGCAGACA
15017 TTCAATTATAATCTATTTTAACAAAAAATATAAAAAAGTTC
131 TTCAATTATAATCTATTTTAACAAAAAATATAAAAAAGTTC
*** *
15058 AACTGAAATTTAATTATGAGATTATAAAACCTTTTGAAAGTGAGTAATAAGACTTTTGAAAGAAT
1 AACTGAAAAGCAATTATGAGATTATAAAACCTTTT-AAAGCGAGTAATAAGACTTTTGAAAGAAT
**********
15123 GGGTGACTATAAATNNNNNNNNNNTATCAATGAATATCTTTTTCTTCACGTTTCACAAGGCAGAC
65 GGGTGACTATAAATCGACTTTTCCTATCAATGAATATCTTTTTCTTCACGTTTCACAAGGCAGAC
*
15188 ATTCAATTATAATCTTTTTTAACAAAAAATATAAAAAAGTTC
130 ATTCAATTATAATCTATTTTAACAAAAAATATAAAAAAGTTC
15230 AACTGAAAAGCAATTATGAGATTATAAA
1 AACTGAAAAGCAATTATGAGATTATAAA
15258 NNNNNNNNNN
Statistics
Matches: 306, Mismatches: 63, Indels: 3
0.82 0.17 0.01
Matches are distributed among these distances:
170 6 0.02
171 168 0.55
172 132 0.43
ACGTcount: A:0.41, C:0.12, G:0.11, T:0.33
Consensus pattern (171 bp):
AACTGAAAAGCAATTATGAGATTATAAAACCTTTTAAAGCGAGTAATAAGACTTTTGAAAGAATG
GGTGACTATAAATCGACTTTTCCTATCAATGAATATCTTTTTCTTCACGTTTCACAAGGCAGACA
TTCAATTATAATCTATTTTAACAAAAAATATAAAAAAGTTC
Found at i:17704 original size:170 final size:165
Alignment explanation
Indices: 17161--17719 Score: 466
Period size: 173 Copynumber: 3.3 Consensus size: 165
17151 NNNNNNNNNN
* * * *
17161 TTTATAGTCACCCATTTCTTCAAAAGCCTTATTACTTGCTTTAAAAGGTTTTATATTCTCAAACT
1 TTTATAGTCACCCATTCCTTCAAAAGCCTTATTACTCGCTTTAAAAGGATTTATAATCTCAAA-T
* * * * *
17226 TAATTTTAAGTTCAATTGTTTT-TGCATTTTTGTGTCAAACAAATTATAATTGACTGTCTACCTC
65 TAATTTTAA-TTGAATT-TTTTAT--ATTTTT-TATTAAACAAATTATAATTGAATGTCTACCTT
* * * * * *
17290 GAGAAACGTAAAAAAAAAAGTCATTCATTGACAAAAAAGTCCA
125 GAAAAACGGAAGAAAAAGA-T-ATTGATTGACAGAAAAGTCCA
* * * * * **
17333 TTTATAGTCAACCATTCCTTTAAAAGTCTTATTACTTGCTTTAAATAGTA-TTATAATCAAAAAA
1 TTTATAGTCACCCATTCCTTCAAAAGCCTTATTACTCGCTTTAAA-AGGATTTATAATC--TCAA
* * *
17397 ATTCATTTTACTTTGAATTCTATGTATA-TTTTTATATAAAGCAAATTATAATTGAATGTCTACC
63 ATTAATTTTA-ATTGAATT-T-TTTATATTTTTTAT-TAAA-CAAATTATAATTGAATGTCTACC
* * *
17461 CT-AAGAAATGTGAAGAAAATGGCAT-TTG-TTGGGA-AGAAAAGTCCA
123 TTGAA-AAACG-GAAGAAAA-AG-ATATTGATT--GACAGAAAAGTCCA
* * * **
17506 TTTATAGGCACCTATTTCTTTGAAAGCCTTATTACTCGCTTTAAAAGGATTTATAATCTCATAAT
1 TTTATAGTCACCCATTCCTTCAAAAGCCTTATTACTCGCTTTAAAAGGATTTATAATCTCA-AAT
* * * *
17571 TGATTTTCAATTGAACTTTTTTATATTTTTTATTAAACAGATTATAATTGAATATCTGCCTTGAA
65 TAATTTT-AATTGAA-TTTTTTATATTTTTTATTAAACAAATTATAATTGAATGTCTACCTTGAA
*
17636 AAACAGGAAGAAAAAGATATTGATTGACAGGAAAAGTTCA
128 AAAC-GGAAGAAAAAGATATTGATTGACA-GAAAAGTCCA
* *
17676 TTTATAGTTACCCATTCCTTCAAAAGCCTTATTACTCACTTTAA
1 TTTATAGTCACCCATTCCTTCAAAAGCCTTATTACTCGCTTTAA
17720 NNNNNNNNNN
Statistics
Matches: 308, Mismatches: 54, Indels: 52
0.74 0.13 0.13
Matches are distributed among these distances:
168 4 0.01
169 5 0.02
170 80 0.26
171 15 0.05
172 83 0.27
173 105 0.34
174 13 0.04
175 2 0.01
176 1 0.00
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.38
Consensus pattern (165 bp):
TTTATAGTCACCCATTCCTTCAAAAGCCTTATTACTCGCTTTAAAAGGATTTATAATCTCAAATT
AATTTTAATTGAATTTTTTATATTTTTTATTAAACAAATTATAATTGAATGTCTACCTTGAAAAA
CGGAAGAAAAAGATATTGATTGACAGAAAAGTCCA
Found at i:19864 original size:170 final size:161
Alignment explanation
Indices: 19674--19993 Score: 367
Period size: 171 Copynumber: 1.9 Consensus size: 161
19664 CTTTTTATAT
* ** * *
19674 TTTTTGTTCAAACAGATTATAATTGAA-TGTTTGCCTTGAGAAACGTGAAGAAAAA-AAATTCAT
1 TTTTTGTTAAAACAGATTATAATT-AATTGCCTACCTTGAGAAACGTAAAGAAAAAGAAATTCAT
* * * *
19737 TGATAGGAAAAGTCCATTTATAGTCACTCATTC-CTTCAAAAGCTTTATTAATTGCTTTAAAAGG
65 TGACAGGAAAAGTCCATTTATAGTCACCCATTCTCTT-AAAAGCCTTATTAATCGCTTTAAAAGG
* *
19801 TTTTATAATCTCATAATTGATTTTAAGTTAAAC
129 TTTTACAATCTCAAAATTGATTTTAAGTTAAAC
19834 TNNNNNNNNNNTTTTGTTAAAACAGATTATAATTAATTGCCTACCTTGAGAAACGTAAAGAAAAA
1 T----------TTTTGTTAAAACAGATTATAATTAATTGCCTACCTTGAGAAACGTAAAGAAAAA
* ** *
19899 GATATTCATTGACAGGAAAAGTTTATTTATAGTCACCCATTCTCTTAAAAGCCTTATTACTCGCT
56 GAAATTCATTGACAGGAAAAGTCCATTTATAGTCACCCATTCTCTTAAAAGCCTTATTAATCGCT
*
19964 TTAAAAGGTTTTACATTCTCAAAATTGATT
121 TTAAAAGGTTTTACAATCTCAAAATTGATT
19994 NNNNNNNNNN
Statistics
Matches: 131, Mismatches: 16, Indels: 15
0.81 0.10 0.09
Matches are distributed among these distances:
160 1 0.01
169 2 0.02
170 46 0.35
171 79 0.60
172 3 0.02
ACGTcount: A:0.36, C:0.13, G:0.12, T:0.36
Consensus pattern (161 bp):
TTTTTGTTAAAACAGATTATAATTAATTGCCTACCTTGAGAAACGTAAAGAAAAAGAAATTCATT
GACAGGAAAAGTCCATTTATAGTCACCCATTCTCTTAAAAGCCTTATTAATCGCTTTAAAAGGTT
TTACAATCTCAAAATTGATTTTAAGTTAAAC
Found at i:23179 original size:170 final size:162
Alignment explanation
Indices: 22991--23313 Score: 380
Period size: 170 Copynumber: 1.9 Consensus size: 162
22981 NNNNNNAGTA
* * * * * * *
22991 ATAAGGCTTTTAAAGGAATAGTTGACCGTAACTGGACTTTTCTTGTCAATAAATGCATTTTTCTT
1 ATAAGGCTTTTAAAGGAATAGGTGACCATAAATGAACTTTTATTGCCAATAAATGCATTTCTCTT
* * * * * *
23056 CATGTTTCCCAAGGCAGACATTCAATGATAGCCTTTTTTAAC-CAAAATGT-AAAAAAAATCAAC
66 CACGTTCCCCAAGGCAGACATTCAATCATAGCCTTCTTAAACTAAAAATGTAAAAAAAAATCAAC
*
23119 TTAAAATCAATTATGAGATTATAAAATCTTTT
131 TTAAAATCAATTAAGAGATTATAAAATCTTTT
* *
23151 ANNNNNNNNNNTAAGGCTTTTGAAGGAATAGGTGACTATAAATGAACTTTTATTGCCAATAAATG
1 A----------TAAGGCTTTTAAAGGAATAGGTGACCATAAATGAACTTTTATTGCCAATAAATG
*
23216 CCTTTCTCTTCACGTTCCCCAAGGCAGACATTCAATCATAGCCTTCTTAAACTAAAAATGTAAAA
56 CATTTCTCTTCACGTTCCCCAAGGCAGACATTCAATCATAGCCTTCTTAAACTAAAAATGTAAAA
*
23281 AAAAATTAACTTAAAATCAATTAAGAGATTATA
121 AAAAATCAACTTAAAATCAATTAAGAGATTATA
23314 TGACCTTTTA
Statistics
Matches: 133, Mismatches: 18, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
160 1 0.01
170 91 0.68
171 7 0.05
172 34 0.26
ACGTcount: A:0.37, C:0.15, G:0.12, T:0.32
Consensus pattern (162 bp):
ATAAGGCTTTTAAAGGAATAGGTGACCATAAATGAACTTTTATTGCCAATAAATGCATTTCTCTT
CACGTTCCCCAAGGCAGACATTCAATCATAGCCTTCTTAAACTAAAAATGTAAAAAAAAATCAAC
TTAAAATCAATTAAGAGATTATAAAATCTTTT
Found at i:23880 original size:171 final size:169
Alignment explanation
Indices: 22814--24747 Score: 684
Period size: 172 Copynumber: 11.3 Consensus size: 169
22804 NNNNNNNAGC
* * * * * *
22814 GAGTAATAAAGCTTTTGAAGGAATGGGTGACTATAAATGGAC-TTTTCTTACG-AATGAA-AGCC
1 GAGTAATAAGGCTTTTAAAGGAATAGGTGACTATAAATGAACTTTTTCTT--GTCAT-AAGAACC
* * * * * *
22876 TTTTTCTTTAGGTTTCTCAAGGTAGACATTCAATTATAATATGTTTT-AATCAAAAATATAAAAA
63 TTTTTCTTCACGTTTCTCAAGGTAGACAGTCAATTATAATCTATTTTAAAT-AAAAAT-CAAAAA
* * * * *********
22940 GAATTCAAATTACAATCAATTTTGAGATTATAAAACCNNNNNNNNN
126 -AATTTAACTTAAAATCAA-TTTGAGAATATAAAACCTTTTAAAGT
* * ** * * * *
22986 NAGTAATAAGGCTTTTAAAGGAATAGTTGACCGTAACTGGAC-TTTTCTTGTCAATAA-ATGCAT
1 GAGTAATAAGGCTTTTAAAGGAATAGGTGACTATAAATGAACTTTTTCTTGTC-ATAAGA-ACCT
* * * * * ** * ** *
23049 TTTTCTTCATGTTTCCCAAGGCAGACATTCAATGATAGCCT-TTTTTAACCAAAATGTAAAAAAA
64 TTTTCTTCACGTTTCTCAAGGTAGACAGTCAATTATAATCTATTTTAAATAAAAAT-CAAAAAAA
* * * * ****
23113 ATCAACTTAAAATCAATTATGAGATTATAAAATCTTTTANNNN
128 TTTAACTTAAAATCAATT-TGAGAATATAAAACCTTTTAAAGT
****** * * * *
23156 NNNNNNTAAGGCTTTTGAAGGAATAGGTGACTATAAATGAAC-TTTTATTGCCAATAA-ATGCCT
1 GAGTAATAAGGCTTTTAAAGGAATAGGTGACTATAAATGAACTTTTTCTTGTC-ATAAGA-ACCT
* * * * * * ** * *
23219 TTCTCTTCACGTTCCCCAAGGCAGACATTCAATCATAGCCT-TCTTAAACTAAAAATGTAAAAAA
64 TTTTCTTCACGTTTCTCAAGGTAGACAGTCAATTATAATCTATTTTAAA-TAAAAA--TCAAAAA
* * * ** *
23283 AAATTAACTTAAAATCAATTAAGAGATTATATGACCTTTTAAAGC
126 AATTTAACTTAAAATCAATT-TGAGAATATAAAACCTTTTAAAGT
* * * * ***
23328 CAGTAATAAGGCCTTTAAAGGAATAGGTGCCTATAAATGGA-TTTTTCTCT-TCAATAA-ATGTT
1 GAGTAATAAGGCTTTTAAAGGAATAGGTGACTATAAATGAACTTTTTCT-TGTC-ATAAGAACCT
* * * * * * * **
23390 ATTTTTTTGACGTTTCTCGAGATAGACATTCAATTATAATCTGTCTTATTTAAAAAT-ATGCAAA
64 -TTTTCTTCACGTTTCTCAAGGTAGACAGTCAATTATAATCTATTTTAAATAAAAATCA---AAA
* * * * ********** *
23454 GAATTCAAATTAAAATCAATTTTGAGATTANNNNNNNNNNTAAAGC
125 AAATTTAACTTAAAATCAA-TTTGAGAATATAAAACCTTTTAAAGT
* * * * *
23500 GAGTAATAAGACTTTTAAAGGAATATGTAACTATAAATGGA-TTTTTCTTGCCA-AAGAATGCCT
1 GAGTAATAAGGCTTTTAAAGGAATAGGTGACTATAAATGAACTTTTTCTTGTCATAAGAA--CCT
* ** * * *
23563 TTTTCTTTACGTTTCTTGAGGTAGACAGTCAATTATAATTTATTTTATACAAAAAT-ATAAAAAA
64 TTTTCTTCACGTTTCTCAAGGTAGACAGTCAATTATAATCTATTTTAAATAAAAATCA-AAAAAA
** * * *
23627 TAAAATTTAAAATCAATTTTGAGAATGTAAAACCTTTTAAAGC
128 TTTAACTTAAAATCAA-TTTGAGAATATAAAACCTTTTAAAGT
** * *
23670 GAGTAATTAAGGCTTTTGTAGAGTATAGGTGGC--TAAATGAACTTTTTCTTGTCATAA-AACCT
1 GAGTAA-TAAGGCTTTTAAAG-GAATAGGTGACTATAAATGAACTTTTTCTTGTCATAAGAACCT
* * * * * *
23732 TTTTCTTCATGTTTCTCAAGGTAGATAGTCAAATATACTCTGTTTTAAATGAAAATGCAAAACAA
64 TTTTCTTCACGTTTCTCAAGGTAGACAGTCAATTATAATCTATTTTAAATAAAAAT-CAAAA-AA
* * *
23797 ATTTAACTTAAAATCAATTTCGAGAATATACAACTTTTTAAAAT
127 ATTTAACTTAAAATCAATTT-GAGAATATAAAACCTTTTAAAGT
* * * *
23841 GAGTAATAAGGCTTTTAAAGGAATGGGTGACTATAAATGAAAC--TTTCTTGTCAATGAATATCT
1 GAGTAATAAGGCTTTTAAAGGAATAGGTGACTATAAATG-AACTTTTTCTTGTC-AT-AAGAACC
* * *
23904 TTTTTTTTCACGTTTCTCAAGGCAGACA-TCCAATTATAATCTATTCT-AATAAAAAATACAAAA
63 TTTTTCTTCACGTTTCTCAAGGTAGACAGT-CAATTATAATCTATTTTAAAT-AAAAAT-CAAAA
* *
23967 AAATTCT-ACTTAAAATCAATTATTAGATTATAAAACCTTTTAAAGT
125 AAATT-TAACTTAAAATCAATT-TGAGAATATAAAACCTTTTAAAGT
********** * *
24013 GAGTAATAAGNNNNNNNNNNGAATAGGTGACTATAAATGGAC-TTTTCTTGTCAATGAA-TACCT
1 GAGTAATAAGGCTTTTAAAGGAATAGGTGACTATAAATGAACTTTTTCTTGTC-AT-AAGAACCT
** * * * * *
24076 TTTTCCACACATTTCTCGAGATAGACATTCAATTATAATCTATTTTAACAGAAAATAT-AAAAAA
64 TTTTCTTCACGTTTCTCAAGGTAGACAGTCAATTATAATCTATTTTAA-ATAAAA-ATCAAAAAA
* ********** *
24140 ATTCAACTTAAAATCAATTATNNNNNNNNNNAACCTTTTAAAGC
127 ATTTAACTTAAAATCAATT-TGAGAATATAAAACCTTTTAAAGT
** * * * ** * *
24184 GAGTAATAACACTTTTAAAAGAATAGGCGACTATAAATGGAC-TTTTCTTACCAATAA-ATGCAT
1 GAGTAATAAGGCTTTTAAAGGAATAGGTGACTATAAATGAACTTTTTCTTGTC-ATAAGA-ACCT
* * * * * * ** ** *
24247 TTTTCTTCACATTTTTCAAGGCAAAACATTCAATTGTAGCCT-TCTTTAACCAAAAATATAAAAA
64 TTTTCTTCACGTTTCTCAAGG-TAGACAGTCAATTATAATCTAT-TTTAAATAAAAAT-CAAAAA
* **
24311 AATATTAACTTAAAATCAATTATGAGATTATAAAACCTTTTAAAAC
126 AAT-TTAACTTAAAATCAATT-TGAGAATATAAAACCTTTTAAAGT
* * * ********** * *
24357 GAGTATTAAGGCTTTTGAAGGAATGGGNNNNNNNNNNTGAAC-TTTTCTTGCCAATGAATG-TCT
1 GAGTAATAAGGCTTTTAAAGGAATAGGTGACTATAAATGAACTTTTTCTTGTC-AT-AA-GAAC-
* * * * * * *
24420 TTTTTTTTTCACGTTTCTTAAGGTAAACAGTCAATTATAATATGTTTTAAATGAAAATATAAAAA
62 CTTTTTCTTCACGTTTCTCAAGGTAGACAGTCAATTATAATCTATTTTAAAT-AAAA-ATCAAAA
* * *
24485 AAATTGAACTTAAAATCAATTTTGAGAATACAAAACCATTTAAAGT
125 AAATTTAACTTAAAATCAA-TTTGAGAATATAAAACCTTTTAAAGT
* * * * * * ** *
24531 GAGTCATAAGGCTTCTGAAGGAATAGGTAACTATATATGGAC-TTTTCTCATCAATGAA-TACCT
1 GAGTAATAAGGCTTTTAAAGGAATAGGTGACTATAAATGAACTTTTTCTTGTC-AT-AAGAACCT
** * * * * * ***********
24594 TTTTCTTCATATTTCTCGAGGTAGATATTCAATTATAATTTGTTTTAACAGNNNNNNNNNNAAAA
64 TTTTCTTCACGTTTCTCAAGGTAGACAGTCAATTATAATCTATTTTAA-ATAAAAATCAAAAAAA
** * * *
24659 TACAACTTAAAATCAATTATCAGATTCTAAAACCTTTTAAAGT
128 TTTAACTTAAAATCAATT-TGAGAATATAAAACCTTTTAAAGT
*
24702 GAGTAATAAGGCTTTTGAAA-GAATGGGTGACTATAAATTG-ACTTTT
1 GAGTAATAAGGCTTTT-AAAGGAATAGGTGACTATAAA-TGAACTTTT
Statistics
Matches: 1336, Mismatches: 362, Indels: 128
0.73 0.20 0.07
Matches are distributed among these distances:
169 58 0.04
170 207 0.15
171 307 0.23
172 501 0.38
173 133 0.10
174 95 0.07
175 33 0.02
176 2 0.00
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.34
Consensus pattern (169 bp):
GAGTAATAAGGCTTTTAAAGGAATAGGTGACTATAAATGAACTTTTTCTTGTCATAAGAACCTTT
TTCTTCACGTTTCTCAAGGTAGACAGTCAATTATAATCTATTTTAAATAAAAATCAAAAAAATTT
AACTTAAAATCAATTTGAGAATATAAAACCTTTTAAAGT
Done.