Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018399501.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2761.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 6025
ACGTcount: A:0.23, C:0.07, G:0.08, T:0.22
Warning! 2394 characters in sequence are not A, C, G, or T
Found at i:479 original size:171 final size:170
Alignment explanation
Indices: 12--1973 Score: 1792
Period size: 171 Copynumber: 11.5 Consensus size: 170
2 GAATGAGAAG
* ** ** * * **
12 CTATAAATGGACTTTTCTTATCAATGAATGCTTTTTTCTTCACGTTTCTTAAGGCAGATGTTCAA
1 CTATAAATGAACTTTTCTTGCCAATGAATGCTTTTTTCTTCAC-TTTCTCGAGGTAAACATTCAA
* * *
77 TTATAGTTTGTTTTAATGAAAAATGTAAAAAATTTCAACTTAAAATCAATTATTAGATTAT-AAA
65 TTATAGTCTGTTTTAATGAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAA
* * *
141 CTATTTAAAGCGAGTAATAAGACTTTTGAAAGAATGAGTGA
130 CCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGTGA
* * * * *
182 CTATAAATGGACTTTTCTTGCCAATGAATG-TGTTTTCTTCACGTTTCTTGAGGTAGATATTCAA
1 CTATAAATGAACTTTTCTTGCCAATGAATGCTTTTTTCTTCAC-TTTCTCGAGGTAAACATTCAA
* * * *
246 TTATAGTCTGTTTTAATGAAAGATGTAAAAAAACTCAACTTAAAATCAATTATAATATTATAAAA
65 TTATAGTCTGTTTTAATGAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAA
* * * * *
311 CCATTTAAAGTGAGTAATAAGGTTTTTGAAGGATTGGGCGA
130 CCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGTGA
** * * * *
352 CTATAAATGAACTTTTCTTGAAAATGAATACTTTTTCCTTCACGATTT-TCGAGATAGACATTCA
1 CTATAAATGAACTTTTCTTGCCAATGAATGCTTTTTTCTTCAC--TTTCTCGAGGTAAACATTCA
* * * *
416 ATTATTGTCTGTTTTAATAAAAAATGTAAAAAAATTCAACTTAAAATTAATTATTAGATTATAAA
64 ATTATAGTCTGTTTTAATGAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAA
* *
481 ACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGAGG
129 ACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGTGA
* *
523 CTATAAAT-AGACTTTTTTTTGCCAATGAATGTTTTTTTCTTCACATTTCTCGAGGTAAACATTC
1 CTATAAATGA-AC-TTTTCTTGCCAATGAATGCTTTTTTCTTCAC-TTTCTCGAGGTAAACATTC
* * * *
587 AATTATAG-CTTGTTTTAACGAAAAATGTAAAAATATTTAACTTAAAATCAATTACGAGATTATA
63 AATTATAGTC-TGTTTTAATGAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATA
* * * * *
651 AAACTATTTGAAGTGAGTAATATGACTTTTGAAGGAAATG-GTGA
127 AAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGG-AATGAGTGA
* * * * * *
695 CTATAAATGGACTTTTCTTGTCAATGAATACTTTTTTCTTTACATTTCTCAAGGTAAATATTCAA
1 CTATAAATGAACTTTTCTTGCCAATGAATGCTTTTTTCTTCAC-TTTCTCGAGGTAAACATTCAA
* * * * *
760 TTATAGTCTATTTTAATCAAAAATATAAAAAAAATTCAA-TCTAAAATCAATTACGAGATTAAAA
65 TTATAGTCTGTTTTAATGAAAAATGT-AAAAAAATTCAACT-TAAAATCAATTATGAGATTATAA
* * *
824 AACCATTTAAAGCGAGCT-ACAAGGCTTTTGAAAGAATGGGTGA
128 AACCATTTAAAGCGAG-TAATAAGGCTTTTGAAGGAATGAGTGA
* * ** * * * * * * * *
867 CTATAAATAAACTTTTCTTGTCTCTAAATACTTTTATCTTTACGTTTCTCAAGATAGACAGTCAA
1 CTATAAATGAACTTTTCTTGCCAATGAATGCTTTTTTCTTCAC-TTTCTCGAGGTAAACATTCAA
* * * * * * *
932 TTATTGTCTGTTTTAATAAAAAAGGTACAAAAATTCAACTTAAAGTCAATTATGAGATAAGAAAA
65 TTATAGTCTGTTTTAATGAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAA
** * *
997 CCATTTAAAATGAGTAATAAGGCTTTTGAAGGAATGAGAGG
130 CCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGTGA
* ** * *
1038 CTATAAATAGAA-TTTTCTTGCCAATGAATGCTTTTTTCTCCACTTTTCTTAAGGCAGACATTCA
1 CTATAAAT-GAACTTTTCTTGCCAATGAATGCTTTTTTCTTCAC-TTTCTCGAGGTAAACATTCA
* * * * * *
1102 ATTATAGTCTGTTTTAAGGAAAAATATAAAAAAGTTGAACTTAAAATTAATTATGAGATTATACA
64 ATTATAGTCTGTTTTAATGAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAA
* * * * * *
1167 ACTATTTAGAA-CGAGTAAAAAGGCTGTTAAAGGAATGAGAGG
129 ACCATTTA-AAGCGAGTAATAAGGCTTTTGAAGGAATGAGTGA
* ** ** * ** * * ** *
1209 CTATAAATGGACTTTTCTTATCAATGAATGCTTTTTTCTTCGTGTTTGTTAAGGCAGATGTTTAA
1 CTATAAATGAACTTTTCTTGCCAATGAATGCTTTTTTCTTC-ACTTTCTCGAGGTAAACATTCAA
* ** * *
1274 TTATAGTCTGTTTTAATGAAAAATGTAAAAAATTTTGACTTAAAATCAATTATTAGATTGTAAAA
65 TTATAGTCTGTTTTAATGAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAA
* *
1339 CCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGAGG
130 CCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGTGA
* * *
1380 CTATAAAT-AGACTTTTCTTTCCAATGAATGCTTTTTTTTTCACATTTCTTGAGGTAAACATTCA
1 CTATAAATGA-ACTTTTCTTGCCAATGAATGCTTTTTTCTTCAC-TTTCTCGAGGTAAACATTCA
* * * * * *
1444 ATTATAGCCTGTTTTAATAAAAAATGTAATAATATTTAACTTAAAATCAATTACGAGATTATAAA
64 ATTATAGTCTGTTTTAATGAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAA
* * * * * *
1509 ATCATTTGAAGTGAGTAATATGGCTTTTGAAGGAA-AAGGTGG
129 ACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGA-GTGA
* ** * *
1551 CTATAAATGAACTTTTTTTTGTTAATGAATGCTTTTTTCTTCACATTTCTCTAGGTAAATATTCA
1 CTATAAATGAAC-TTTTCTTGCCAATGAATGCTTTTTTCTTCAC-TTTCTCGAGGTAAACATTCA
* * * ** *****
1616 ATTATAGTCTGTTTTAATCAAAAATATAAAAAAATTAAACCAAAAATCAATTATGAGATTNNNNN
64 ATTATAGTCTGTTTTAATGAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAA
******** * * *
1681 NNNNNNNNAAGTGAGTAACAAGGCTTTTGAAGGAATGGGTGA
129 ACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGTGA
* * * * * * *
1723 CTATAAATGAACTTTTCTTGTCACTGAATGCATTTGTCTTCATGTTTCTCGAGATAAATAGTT-A
1 CTATAAATGAACTTTTCTTGCCAATGAATGCTTTTTTCTTCA-CTTTCTCGAGGTAAACA-TTCA
* * * ********** *
1787 ATTATTGTCTGTTTTAATCAAAAATGTAAAACAATTCAACTTANNNNNNNNNNTGAGATTAGAAA
64 ATTATAGTCTGTTTTAATGAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAA
** * *
1852 ACCATTTAAAATGAGTAATAAGGTTTTTGAAGGAATGAGAGA
129 ACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGTGA
* * * * *
1894 TTATAAAT-AGACTTTTCTTGCCAATAAATGCCTTTTTCTTCACTTTTCTCGAGGCAGACATTCA
1 CTATAAATGA-ACTTTTCTTGCCAATGAATGCTTTTTTCTTCAC-TTTCTCGAGGTAAACATTCA
* *
1958 ATTGTAATCTGTTTTA
64 ATTATAGTCTGTTTTA
1974 NNNNNNNNNN
Statistics
Matches: 1470, Mismatches: 290, Indels: 63
0.81 0.16 0.03
Matches are distributed among these distances:
169 85 0.06
170 100 0.07
171 863 0.59
172 417 0.28
173 5 0.00
ACGTcount: A:0.37, C:0.11, G:0.14, T:0.37
Consensus pattern (170 bp):
CTATAAATGAACTTTTCTTGCCAATGAATGCTTTTTTCTTCACTTTCTCGAGGTAAACATTCAAT
TATAGTCTGTTTTAATGAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAAC
CATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGTGA
Found at i:699 original size:343 final size:340
Alignment explanation
Indices: 12--1973 Score: 1878
Period size: 343 Copynumber: 5.7 Consensus size: 340
2 GAATGAGAAG
* ** * ** * * **
12 CTATAAATGGACTTTTCTTATCAATGAATGCTTTTTTCTTCACGTTTCTTAAGGCAGATGTTCAA
1 CTATAAATGAACTTTTCTTGCCAATGAATGCTTTTTTCTTCACATTTCTCGAGGTAAACATTCAA
* * * *
77 TTATAGTTTGTTTTAATGAAAAATGTAAAAAATTTCAACTTAAAATCAATTATTAGATTAT-AAA
66 TTATAGTCTGTTTTAATAAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAA
* * * * *
141 CTATTTAAAGCGAGTAATAAGACTTTTGAAAGAATGAGTGACTATAAATGGACTTTTCTTGCCAA
131 CCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGAGACTATAAATAGACTTTTCTTGCCAA
* * * *
206 TGAATG-TGTTTTCTTCACGTTTCTTGAGGTAGATATTCAATTATAGTCTGTTTTAATGAAAGAT
196 TGAATGCTTTTTTCTTCACGTTTCTCGAGGTAGACATTCAATTATAGTCTGTTTTAATGAAAAAT
* * * *
270 GTAAAAAAACTCAACTTAAAATCAATTATAATATTATAAAACCATTTAAAGTGAGTAATAAGGTT
261 GT-AAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCT
* *
335 TTTGAAGGATTGGGCGA
325 TTTGAAGGAAT-GGAGA
** * * * *
352 CTATAAATGAACTTTTCTTGAAAATGAATACTTTTTCCTTCACGATTT-TCGAGATAGACATTCA
1 CTATAAATGAACTTTTCTTGCCAATGAATGCTTTTTTCTTCAC-ATTTCTCGAGGTAAACATTCA
* * *
416 ATTATTGTCTGTTTTAATAAAAAATGTAAAAAAATTCAACTTAAAATTAATTATTAGATTATAAA
65 ATTATAGTCTGTTTTAATAAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAA
* *
481 ACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGAGGCTATAAATAGACTTTTTTTTGCC
130 ACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGAGACTATAAATAGAC-TTTTCTTGCC
* * * *
546 AATGAATGTTTTTTTCTTCACATTTCTCGAGGTAAACATTCAATTATAG-CTTGTTTTAACGAAA
194 AATGAATGCTTTTTTCTTCACGTTTCTCGAGGTAGACATTCAATTATAGTC-TGTTTTAATGAAA
* * * * *
610 AATGTAAAAATATTTAACTTAAAATCAATTACGAGATTATAAAACTATTTGAAGTGAGTAATATG
258 AATGTAAAAA-ATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAG
* *
675 ACTTTTGAAGGAAATGGTGA
322 GCTTTTGAAGG-AATGGAGA
* * * * * *
695 CTATAAATGGACTTTTCTTGTCAATGAATACTTTTTTCTTTACATTTCTCAAGGTAAATATTCAA
1 CTATAAATGAACTTTTCTTGCCAATGAATGCTTTTTTCTTCACATTTCTCGAGGTAAACATTCAA
* * * * *
760 TTATAGTCTATTTTAATCAAAAATATAAAAAAAATTCAA-TCTAAAATCAATTACGAGATTAAAA
66 TTATAGTCTGTTTTAATAAAAAATGT-AAAAAAATTCAACT-TAAAATCAATTATGAGATTATAA
* * * * * *
824 AACCATTTAAAGCGAGCT-ACAAGGCTTTTGAAAGAATGGGTGACTATAAATAAACTTTTCTTGT
129 AACCATTTAAAGCGAG-TAATAAGGCTTTTGAAGGAATGAGAGACTATAAATAGACTTTTCTTGC
** * * * * * * * * *
888 CTCTAAATACTTTTATCTTTACGTTTCTCAAGATAGACAGTCAATTATTGTCTGTTTTAATAAAA
193 CAATGAATGCTTTTTTCTTCACGTTTCTCGAGGTAGACATTCAATTATAGTCTGTTTTAATGAAA
* * * * *
953 AAGGTACAAAAATTCAACTTAAAGTCAATTATGAGATAAGAAAACCATTTAAAATGAGTAATAAG
258 AATGTA-AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAG
*
1018 GCTTTTGAAGGAATGAGAGG
322 GCTTTTGAAGGAATG-GAGA
* * ** * *
1038 CTATAAATAGAA-TTTTCTTGCCAATGAATGCTTTTTTCTCCACTTTTCTTAAGGCAGACATTCA
1 CTATAAAT-GAACTTTTCTTGCCAATGAATGCTTTTTTCTTCACATTTCTCGAGGTAAACATTCA
** * * * * *
1102 ATTATAGTCTGTTTTAAGGAAAAATATAAAAAAGTTGAACTTAAAATTAATTATGAGATTATACA
65 ATTATAGTCTGTTTTAATAAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAA
* * * * * * **
1167 ACTATTTAGAA-CGAGTAAAAAGGCTGTTAAAGGAATGAGAGGCTATAAATGGACTTTTCTTATC
130 ACCATTTA-AAGCGAGTAATAAGGCTTTTGAAGGAATGAGAGACTATAAATAGACTTTTCTTGCC
** * ** * ** *
1231 AATGAATGCTTTTTTCTTCGTGTTTGTTAAGGCAGATGTTTAATTATAGTCTGTTTTAATGAAAA
194 AATGAATGCTTTTTTCTTCACGTTTCTCGAGGTAGACATTCAATTATAGTCTGTTTTAATGAAAA
** * * *
1296 ATGTAAAAAATTTTGACTTAAAATCAATTATTAGATTGTAAAACCATTTAAAGCGAGTAATAAGG
259 ATGTAAAAAA-TTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGG
*
1361 CTTTTGAAGGAATGAGAGG
323 CTTTTGAAGGAATG-GAGA
* * *
1380 CTATAAAT-AGACTTTTCTTTCCAATGAATGCTTTTTTTTTCACATTTCTTGAGGTAAACATTCA
1 CTATAAATGA-ACTTTTCTTGCCAATGAATGCTTTTTTCTTCACATTTCTCGAGGTAAACATTCA
* * * * *
1444 ATTATAGCCTGTTTTAATAAAAAATGTAATAATATTTAACTTAAAATCAATTACGAGATTATAAA
65 ATTATAGTCTGTTTTAATAAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAA
* * * * * * * *
1509 ATCATTTGAAGTGAGTAATATGGCTTTTGAAGGAA-AAGGTGGCTATAAAT-GAACTTTTTTTTG
130 ACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGA-GAGACTATAAATAG-AC-TTTTCTTG
** * * * * *
1572 TTAATGAATGCTTTTTTCTTCACATTTCTCTAGGTAAATATTCAATTATAGTCTGTTTTAATCAA
192 CCAATGAATGCTTTTTTCTTCACGTTTCTCGAGGTAGACATTCAATTATAGTCTGTTTTAATGAA
* * ** ************* *
1637 AAATATAAAAAAATTAAACCAAAAATCAATTATGAGATTNNNNNNNNNNNNNAAGTGAGTAACAA
257 AAATGT-AAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAA
*
1702 GGCTTTTGAAGGAATGGGTGA
321 GGCTTTTGAAGGAAT-GGAGA
* * * * ** * *
1723 CTATAAATGAACTTTTCTTGTCACTGAATGCATTTGTCTTCATGTTTCTCGAGATAAATAGTT-A
1 CTATAAATGAACTTTTCTTGCCAATGAATGCTTTTTTCTTCACATTTCTCGAGGTAAACA-TTCA
* * * ********** *
1787 ATTATTGTCTGTTTTAATCAAAAATGTAAAACAATTCAACTTANNNNNNNNNNTGAGATTAGAAA
65 ATTATAGTCTGTTTTAATAAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAA
** * *
1852 ACCATTTAAAATGAGTAATAAGGTTTTTGAAGGAATGAGAGATTATAAATAGACTTTTCTTGCCA
130 ACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGAGACTATAAATAGACTTTTCTTGCCA
* * * * * *
1917 ATAAATGCCTTTTTCTTCACTTTTCTCGAGGCAGACATTCAATTGTAATCTGTTTTA
195 ATGAATGCTTTTTTCTTCACGTTTCTCGAGGTAGACATTCAATTATAGTCTGTTTTA
1974 NNNNNNNNNN
Statistics
Matches: 1320, Mismatches: 271, Indels: 60
0.80 0.16 0.04
Matches are distributed among these distances:
340 105 0.08
341 64 0.05
342 424 0.32
343 627 0.47
344 99 0.08
345 1 0.00
ACGTcount: A:0.37, C:0.11, G:0.14, T:0.37
Consensus pattern (340 bp):
CTATAAATGAACTTTTCTTGCCAATGAATGCTTTTTTCTTCACATTTCTCGAGGTAAACATTCAA
TTATAGTCTGTTTTAATAAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAA
CCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGAGACTATAAATAGACTTTTCTTGCCAA
TGAATGCTTTTTTCTTCACGTTTCTCGAGGTAGACATTCAATTATAGTCTGTTTTAATGAAAAAT
GTAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTT
TTGAAGGAATGGAGA
Found at i:1716 original size:514 final size:511
Alignment explanation
Indices: 1--1960 Score: 1962
Period size: 514 Copynumber: 3.8 Consensus size: 511
* * * *
1 GGAATGAGAAGCTATAAATGGACTTTTCTTAT--CAATGAATGCTTTTTTCTTCACGTTTCT-TA
1 GGAATGAGAGGCTATAAATGAACTTTT-TTTTGCCAATGAATGCTTTTTTCTTCACATTTCTCT-
* * ** * * * * *
63 AGGCAGATGTTCAATTATAGTTTGTTTTAATGAAAAATGTAAAAAATTTCAACTTAAAATCAATT
64 AGGTAAACATTCAATTATAGTCTGTTTTAA-CAAAAATATAAAAAAATTAAACTTAAAATCAATT
* * * * * *
128 ATTAGATT-ATAAACTATTTAAAGCGAGTAATAAGACTTTTGAAAGAATGAGTGACTATAAATGG
128 ATGAGATTAAAAAAC-AATTGAAGTGAGTAATAAGACTTTTGAAGGAATGAGTGACTATAAATGG
* * ** *
192 ACTTTTCTTGCCAATGAATG-TGTTTTCTTCACGTTTCTTGAGGTAGATATTCAATTATAGTCTG
192 ACTTTTCTTGTCAATGAATGCTTTTTTCTTCACGTTTCTCAAGGTAAATATTCAATTATAGTCTG
* * * * *
256 TTTTAATGAAAGATGTAAAAAAACTCAACTTAAAATCAATTATAATATTATAAAACCATTTAAAG
257 TTTTAATCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAG
* * * * * ** *
321 TGAGTAATAAGGTTTTTGAAGGATTGGGCGACTATAAAT-GAACTTTTCTTGAAAATGAATACTT
322 CGAGTAATAAGGCTTTTGAAGGAATGAGAGACTATAAATAG-ACTTTTCTTGCCAATAAATACTT
385 TTTCCTTCACGATTT-TCGAGATAGACATTCAATTATTGTCTGTTTTAATAAAAAATGTAAAAAA
386 TTTCCTTCAC-ATTTCTCGAGATAGACATTCAATTATTGTCTGTTTTAATAAAAAATGT-AAAAA
* * *
449 ATTCAACTTAAAATTAATTATTAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAA
449 ATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAA
* *
512 GGAATGAGAGGCTATAAAT-AGACTTTTTTTTGCCAATGAATGTTTTTTTCTTCACATTTCTCGA
1 GGAATGAGAGGCTATAAATGA-ACTTTTTTTTGCCAATGAATGCTTTTTTCTTCACATTTCTCTA
* * *
576 GGTAAACATTCAATTATAG-CTTGTTTTAACGAAAAATGTAAAAATATTTAACTTAAAATCAATT
65 GGTAAACATTCAATTATAGTC-TGTTTTAAC-AAAAATATAAAAAAATTAAACTTAAAATCAATT
* * * *
640 ACGAGATTATAAAACTATTTGAAGTGAGTAATATGACTTTTGAAGGAAATG-GTGACTATAAATG
128 ATGAGATTAAAAAAC-AATTGAAGTGAGTAATAAGACTTTTGAAGG-AATGAGTGACTATAAATG
* * *
704 GACTTTTCTTGTCAATGAATACTTTTTTCTTTACATTTCTCAAGGTAAATATTCAATTATAGTCT
191 GACTTTTCTTGTCAATGAATGCTTTTTTCTTCACGTTTCTCAAGGTAAATATTCAATTATAGTCT
* * * *
769 ATTTTAATCAAAAATATAAAAAAAATTCAA-TCTAAAATCAATTACGAGATTAAAAAACCATTTA
256 GTTTTAATCAAAAATGT-AAAAAAATTCAACT-TAAAATCAATTATGAGATTATAAAACCATTTA
* * * * * * **
833 AAGCGAGCT-ACAAGGCTTTTGAAAGAATGGGTGACTATAAATAAACTTTTCTTGTCTCTAAATA
319 AAGCGAG-TAATAAGGCTTTTGAAGGAATGAGAGACTATAAATAGACTTTTCTTGCCAATAAATA
* * * * *
897 CTTTTAT-CTTTACGTTTCTCAAGATAGACAGTCAATTATTGTCTGTTTTAATAAAAAAGGTACA
383 CTTTT-TCCTTCACATTTCTCGAGATAGACATTCAATTATTGTCTGTTTTAATAAAAAATGTA-A
* * * *
961 AAAATTCAACTTAAAGTCAATTATGAGATAAGAAAACCATTTAAAATGAGTAATAAGGCTTTTGA
446 AAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGA
1026 A
511 A
* * *
1027 GGAATGAGAGGCTATAAATAGAA--TTTTCTTGCCAATGAATGCTTTTTTCTCCACTTTTCT-TA
1 GGAATGAGAGGCTATAAAT-GAACTTTTTTTTGCCAATGAATGCTTTTTTCTTCACATTTCTCT-
* * * * * *
1089 AGGCAGACATTCAATTATAGTCTGTTTTAAGGAAAAATATAAAAAAGTTGAACTTAAAATTAATT
64 AGGTAAACATTCAATTATAGTCTGTTTTAA-CAAAAATATAAAAAAATTAAACTTAAAATCAATT
* * * * * * * * * *
1154 ATGAGATTATACAACTATTTAGAA-CGAGTAAAAAGGCTGTTAAAGGAATGAGAGGCTATAAATG
128 ATGAGATTAAAAAAC-AATT-GAAGTGAGTAATAAGACTTTTGAAGGAATGAGTGACTATAAATG
* ** * * * * * *
1218 GACTTTTCTTATCAATGAATGCTTTTTTCTTCGTGTTTGTTAAGGCAGATGTTTAATTATAGTCT
191 GACTTTTCTTGTCAATGAATGCTTTTTTCTTCACGTTTCTCAAGGTAAATATTCAATTATAGTCT
* * ** * *
1283 GTTTTAATGAAAAATGTAAAAAATTTTGACTTAAAATCAATTATTAGATTGTAAAACCATTTAAA
256 GTTTTAATCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAA
* * * *
1348 GCGAGTAATAAGGCTTTTGAAGGAATGAGAGGCTATAAATAGACTTTTCTTTCCAATGAATGCTT
321 GCGAGTAATAAGGCTTTTGAAGGAATGAGAGACTATAAATAGACTTTTCTTGCCAATAAATACTT
** * * * * * *
1413 TTTTTTTCACATTTCTTGAGGTAAACATTCAATTATAGCCTGTTTTAATAAAAAATGTAATAATA
386 TTTCCTTCACATTTCTCGAGATAGACATTCAATTATTGTCTGTTTTAATAAAAAATGTAA-AAAA
* * * * *
1478 TTTAACTTAAAATCAATTACGAGATTATAAAATCATTTGAAGTGAGTAATATGGCTTTTGAA
450 TTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAA
* * **
1540 GGAA-AAGGTGGCTATAAATGAACTTTTTTTTGTTAATGAATGCTTTTTTCTTCACATTTCTCTA
1 GGAATGA-GAGGCTATAAATGAACTTTTTTTTGCCAATGAATGCTTTTTTCTTCACATTTCTCTA
* **
1604 GGTAAATATTCAATTATAGTCTGTTTTAATCAAAAATATAAAAAAATTAAACCAAAAATCAATTA
65 GGTAAACATTCAATTATAGTCTGTTTTAA-CAAAAATATAAAAAAATTAAACTTAAAATCAATTA
************ * * * *
1669 TGAGATTNNNNNNNNNNNNNAAGTGAGTAACAAGGCTTTTGAAGGAATGGGTGACTATAAATGAA
129 TGAGATT-AAAAAACAATTGAAGTGAGTAATAAGACTTTTGAAGGAATGAGTGACTATAAATGGA
* * * * * * *
1734 CTTTTCTTGTCACTGAATGCATTTGTCTTCATGTTTCTCGAGATAAATAGTT-AATTATTGTCTG
193 CTTTTCTTGTCAATGAATGCTTTTTTCTTCACGTTTCTCAAGGTAAATA-TTCAATTATAGTCTG
* ********** * *
1798 TTTTAATCAAAAATGTAAAACAATTCAACTTANNNNNNNNNNTGAGATTAGAAAACCATTTAAAA
257 TTTTAATCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAG
* * * *
1863 TGAGTAATAAGGTTTTTGAAGGAATGAGAGATTATAAATAGACTTTTCTTGCCAATAAATGCCTT
322 CGAGTAATAAGGCTTTTGAAGGAATGAGAGACTATAAATAGACTTTTCTTGCCAATAAAT-ACTT
* **
1928 TTT-CTTCACTTTTCTCGAGGCAGACATTCAATT
386 TTTCCTTCACATTTCTCGAGATAGACATTCAATT
1961 GTAATCTGTT
Statistics
Matches: 1191, Mismatches: 223, Indels: 67
0.80 0.15 0.05
Matches are distributed among these distances:
510 3 0.00
511 24 0.02
512 93 0.08
513 276 0.23
514 561 0.47
515 230 0.19
516 3 0.00
517 1 0.00
ACGTcount: A:0.37, C:0.11, G:0.14, T:0.36
Consensus pattern (511 bp):
GGAATGAGAGGCTATAAATGAACTTTTTTTTGCCAATGAATGCTTTTTTCTTCACATTTCTCTAG
GTAAACATTCAATTATAGTCTGTTTTAACAAAAATATAAAAAAATTAAACTTAAAATCAATTATG
AGATTAAAAAACAATTGAAGTGAGTAATAAGACTTTTGAAGGAATGAGTGACTATAAATGGACTT
TTCTTGTCAATGAATGCTTTTTTCTTCACGTTTCTCAAGGTAAATATTCAATTATAGTCTGTTTT
AATCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAG
TAATAAGGCTTTTGAAGGAATGAGAGACTATAAATAGACTTTTCTTGCCAATAAATACTTTTTCC
TTCACATTTCTCGAGATAGACATTCAATTATTGTCTGTTTTAATAAAAAATGTAAAAAATTCAAC
TTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAA
Done.