Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399505.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2765.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8954
ACGTcount: A:0.16, C:0.06, G:0.06, T:0.16

Warning! 4951 characters in sequence are not A, C, G, or T


Found at i:7095 original size:59 final size:59

Alignment explanation


    Indices: 7003--7116  Score: 194
    Period size: 59  Copynumber: 1.9  Consensus size: 59

       6993 CTGACTACAA

                      *    *                                            
       7003 CTGAATGTCTGCCTCGAGAAACATGAAGAAAAAAGCATTCATTGGC-AAGAAAAGCCCAT
          1 CTGAATGTCTACCTCAAGAAACATGAAGAAAAAAGCATTCATTGGCTAA-AAAAGCCCAT

                                                                   
       7062 CTGAATGTCTACCTCAAGAAACATGAAGAAAAAAGCATTCATTGGCTAAAAAAGC
          1 CTGAATGTCTACCTCAAGAAACATGAAGAAAAAAGCATTCATTGGCTAAAAAAGC

       7117 TCATTTATAG


Statistics
Matches: 52,  Mismatches: 2, Indels: 2
        0.93            0.04        0.04

Matches are distributed among these distances:
  59   50  0.96
  60    2  0.04

ACGTcount: A:0.43, C:0.19, G:0.18, T:0.19


Consensus pattern (59 bp):   
CTGAATGTCTACCTCAAGAAACATGAAGAAAAAAGCATTCATTGGCTAAAAAAGCCCAT
Done.