Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399514.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2774.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 984

Length: 1641
ACGTcount: A:0.18, C:0.06, G:0.09, T:0.15

Warning! 864 characters in sequence are not A, C, G, or T


Found at i:354 original size:27 final size:27

Alignment explanation


    Indices: 303--355  Score: 88
    Period size: 27  Copynumber: 2.0  Consensus size: 27

        293 TTCCAAAAAA

                                *      
        303 AAAAATAAAGGACATTAACGGGATTTC
          1 AAAAATAAAGGACATTAACGAGATTTC

                               *      
        330 AAAAATAAAGGACATTAACTAGATTT
          1 AAAAATAAAGGACATTAACGAGATTT

        356 GGAGCCAAGA


Statistics
Matches: 24,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  27   24  1.00

ACGTcount: A:0.51, C:0.09, G:0.15, T:0.25


Consensus pattern (27 bp):   
AAAAATAAAGGACATTAACGAGATTTC
Done.