Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399515.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2775.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3630
ACGTcount: A:0.22, C:0.07, G:0.07, T:0.22

Warning! 1510 characters in sequence are not A, C, G, or T


Found at i:2704 original size:170 final size:169

Alignment explanation


    Indices: 2272--2705  Score: 453
    Period size: 170  Copynumber: 2.5  Consensus size: 169

       2262 NNNNNNNNNN

                                 * *                            *   *        
       2272 TTCTTCATGTTTCTTGAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAATTATGAAAAATTC
          1 TTCTTCATGTTTCTTGAGGTAAATATTCAATTATAGTCTGTTTTAACCAAAAATATAAAAAATT-

                                     **********         *    *               
       2337 TACTTAAAATCAATTATGAGATTATNNNNNNNNNNAAAGTGAGTTATAAGGCTTTTGAAAGAATG
         65 TACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAAGCTTTTGAAAGAATG

                                         * *        
       2402 GGTGACTATAAATGGACTTTTCTTGCCAATGTATGTCATT
        130 GGTGACTATAAATGGACTTTTCTTGCCAAAGGATGTCATT

                                    *            * *       *   *             
       2442 TTCTTC-TCGTTTCTTGAGGTAGACT-TTCAATTATAATTTGTTTTAGCCATAAATATCAAAAAA
          1 TTCTTCAT-GTTTCTTGAGGTA-AATATTCAATTATAGTCTGTTTTAACCAAAAATAT-AAAAAA

               *   *          *   *                                          
       2505 TTAAACTCAAAATCAATTTTGATATTATAAAACCATTTAAAGTGAGTAATAAAGCTTTTGAAAGA
         63 TT-TACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAAGCTTTTGAAAGA

                      *                  *          *  
       2570 ATGGGTGACTCTAAATGGAC-TTTCTTGCTAAAGGATG-CCTT
        127 ATGGGTGACTATAAATGGACTTTTCTTGCCAAAGGATGTCATT

                           *   *               *           **                
       2611 TCTCTTCATGTTTCTCGAGATAAATATTCAATTATTGTCTGTTTTAATAAAAAATATAAAAAAAT
          1 T-TCTTCATGTTTCTTGAGGTAAATATTCAATTATAGTCTGTTTTAACCAAAAATAT-AAAAAAT

                                          
       2676 TTAGCTTAAAATCAATTATGAGATTATAAA
         64 TTA-CTTAAAATCAATTATGAGATTATAAA

       2706 NNNNNNNNNN


Statistics
Matches: 211,  Mismatches: 46, Indels: 14
        0.78            0.17        0.05

Matches are distributed among these distances:
 169    8  0.04
 170  130  0.62
 171   73  0.35

ACGTcount: A:0.35, C:0.11, G:0.13, T:0.38


Consensus pattern (169 bp):   
TTCTTCATGTTTCTTGAGGTAAATATTCAATTATAGTCTGTTTTAACCAAAAATATAAAAAATTT
ACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAAGCTTTTGAAAGAATGG
GTGACTATAAATGGACTTTTCTTGCCAAAGGATGTCATT
Done.