Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399521.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2781.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1942
ACGTcount: A:0.21, C:0.10, G:0.11, T:0.16

Warning! 795 characters in sequence are not A, C, G, or T


Found at i:1868 original size:3 final size:3

Alignment explanation


    Indices: 1860--1914  Score: 71
    Period size: 3  Copynumber: 18.7  Consensus size: 3

       1850 CTGGAACTTA

                                                                         
       1860 AAG AAG AAG AAG AAG AAG AAG AAG AAG -AG AAG AGAG AAG CAA- AAG
          1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A-AG AAG -AAG AAG

                          
       1905 AA- AAG AAG AA
          1 AAG AAG AAG AA

       1915 AAGCATTGCT


Statistics
Matches: 47,  Mismatches: 0, Indels: 10
        0.82            0.00        0.18

Matches are distributed among these distances:
   2    6  0.13
   3   36  0.77
   4    5  0.11

ACGTcount: A:0.67, C:0.02, G:0.31, T:0.00


Consensus pattern (3 bp):   
AAG

Done.