Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399532.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2791.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2379
ACGTcount: A:0.15, C:0.05, G:0.04, T:0.15

Warning! 1443 characters in sequence are not A, C, G, or T


Found at i:566 original size:21 final size:21

Alignment explanation


    Indices: 524--566  Score: 52
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        514 AGGAAATGTG

                             *   
        524 AAGAAAAGAGCATTCATTGTC
          1 AAGAAAAGAGCATTCATAGTC

                           *      
        545 AAGAAAAGTA-CATTTATAGTC
          1 AAGAAAAG-AGCATTCATAGTC

             
        566 A
          1 A

        567 CCTATTCCTT


Statistics
Matches: 19,  Mismatches: 2, Indels: 2
        0.83            0.09        0.09

Matches are distributed among these distances:
  21   18  0.95
  22    1  0.05

ACGTcount: A:0.47, C:0.12, G:0.16, T:0.26


Consensus pattern (21 bp):   
AAGAAAAGAGCATTCATAGTC
Done.