Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399543.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_280.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 656

Length: 1094
ACGTcount: A:0.43, C:0.10, G:0.06, T:0.41


Found at i:237 original size:108 final size:110

Alignment explanation


    Indices: 101--304  Score: 288
    Period size: 108  Copynumber: 1.9  Consensus size: 110

         91 AAATATGTTG

                        *                  **                             *  
        101 ATTTAGTTACAATTTTCACAACATACAAATATGCA-TCTTTTTAAAATTATTCAACTCTTACCCA
          1 ATTTAGTTACAACTTTCACAACATACAAATACACATTC-TTTTAAAATTATTCAACTCTTACACA

                                                          
        165 ATTTACC-TTTTATTTAAATTTACT-CAAATTAGCAAAATATACTA
         65 ATTTACCTTTTTATTTAAATTTACTCCAAATTAGCAAAATATACTA

                                 **                   **       *    *        
        209 ATTTAGTTACAACTTTCACAATTTACAAATACACATTCTTTTGCAATTATTTAACTTTTACACAA
          1 ATTTAGTTACAACTTTCACAACATACAAATACACATTCTTTTAAAATTATTCAACTCTTACACAA

                                           
        274 TTTACCTTTTTATTTAAATTTACTCCAAATT
         66 TTTACCTTTTTATTTAAATTTACTCCAAATT

        305 TCTTATAAAA


Statistics
Matches: 83,  Mismatches: 10, Indels: 4
        0.86            0.10        0.04

Matches are distributed among these distances:
 108   58  0.70
 109   19  0.23
 110    6  0.07

ACGTcount: A:0.37, C:0.18, G:0.02, T:0.43


Consensus pattern (110 bp):   
ATTTAGTTACAACTTTCACAACATACAAATACACATTCTTTTAAAATTATTCAACTCTTACACAA
TTTACCTTTTTATTTAAATTTACTCCAAATTAGCAAAATATACTA

Found at i:541 original size:20 final size:19

Alignment explanation


    Indices: 508--547  Score: 55
    Period size: 20  Copynumber: 2.1  Consensus size: 19

        498 TTGAAATATT

                                
        508 AAATAAAATAAAAATATAAA
          1 AAATAAAATAAAAAT-TAAA

                                
        528 AAAT-AAATAAAAAATTAAA
          1 AAATAAAAT-AAAAATTAAA

             
        547 A
          1 A

        548 TGGTGGAGCT


Statistics
Matches: 19,  Mismatches: 0, Indels: 3
        0.86            0.00        0.14

Matches are distributed among these distances:
  19    9  0.47
  20   10  0.53

ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20


Consensus pattern (19 bp):   
AAATAAAATAAAAATTAAA
Done.