Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018397276.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_106.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2845708
ACGTcount: A:0.30, C:0.14, G:0.14, T:0.30
Warning! 346660 characters in sequence are not A, C, G, or T
File 1 of 6
Found at i:6764 original size:5 final size:6
Alignment explanation
Indices: 6735--6771 Score: 56
Period size: 6 Copynumber: 6.0 Consensus size: 6
6725 NNNNNNATTT
*
6735 TAAAAA TAAAAA TAAGAAA GAAAAA TAAAAA TAAAAA
1 TAAAAA TAAAAA TAA-AAA TAAAAA TAAAAA TAAAAA
6772 AATCTAAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
6 23 0.82
7 5 0.18
ACGTcount: A:0.81, C:0.00, G:0.05, T:0.14
Consensus pattern (6 bp):
TAAAAA
Found at i:23410 original size:17 final size:17
Alignment explanation
Indices: 23388--23422 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
23378 AAAAAAAACC
*
23388 TTTTTCTCTGAAACCCT
1 TTTTTCTCTCAAACCCT
23405 TTTTTCTCTCAAACCCT
1 TTTTTCTCTCAAACCCT
23422 T
1 T
23423 GAAACCCTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.17, C:0.31, G:0.03, T:0.49
Consensus pattern (17 bp):
TTTTTCTCTCAAACCCT
Found at i:28284 original size:13 final size:13
Alignment explanation
Indices: 28266--28293 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
28256 GTGCCCTTAG
28266 TTTTTATTTTTAT
1 TTTTTATTTTTAT
28279 TTTTTATTTTTAT
1 TTTTTATTTTTAT
28292 TT
1 TT
28294 ATATAAAAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (13 bp):
TTTTTATTTTTAT
Found at i:28502 original size:51 final size:49
Alignment explanation
Indices: 28439--28554 Score: 146
Period size: 51 Copynumber: 2.3 Consensus size: 49
28429 TTTTCTTTTC
28439 TTTTTTT-CTTAGCTCAAATTTCAAAATTATTTT-TTTGTCTTTCTTTCCCA
1 TTTTTTTCCTTAGCTCAAATTTCAAAATTATTTTCTTT-TCTTT-TTT-CCA
*** *
28489 TTTTTTTCCTTAGCTCAAATTTTGGAATTATTTTCTTTTCTTTTTTTCA
1 TTTTTTTCCTTAGCTCAAATTTCAAAATTATTTTCTTTTCTTTTTTCCA
*
28538 CTTTTTTCCTTAGCTCA
1 TTTTTTTCCTTAGCTCA
28555 TCTAGGCCCA
Statistics
Matches: 59, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
49 18 0.31
50 10 0.17
51 28 0.47
52 3 0.05
ACGTcount: A:0.17, C:0.18, G:0.05, T:0.59
Consensus pattern (49 bp):
TTTTTTTCCTTAGCTCAAATTTCAAAATTATTTTCTTTTCTTTTTTCCA
Found at i:28568 original size:59 final size:61
Alignment explanation
Indices: 28504--28618 Score: 189
Period size: 60 Copynumber: 1.9 Consensus size: 61
28494 TTCCTTAGCT
*
28504 CAAATTTTGGAATTA-TTTTCTTTTCTTTTTTTCACTTTTT-TCCTTAGCTCATCTAGGCC
1 CAAATTTTGGAATTATTTTTCTTTTCTTTTTTTCACTTTTTCTCCTTAGCTAATCTAGGCC
* *
28563 CAAATTTTGGCATTATTTTTCTTTTCTTTTTTTCCCTTTTTCTCCTTAGCTAATCT
1 CAAATTTTGGAATTATTTTTCTTTTCTTTTTTTCACTTTTTCTCCTTAGCTAATCT
28619 TTTCTTTTCT
Statistics
Matches: 51, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
59 14 0.27
60 24 0.47
61 13 0.25
ACGTcount: A:0.16, C:0.21, G:0.07, T:0.57
Consensus pattern (61 bp):
CAAATTTTGGAATTATTTTTCTTTTCTTTTTTTCACTTTTTCTCCTTAGCTAATCTAGGCC
Found at i:49519 original size:165 final size:162
Alignment explanation
Indices: 49041--49623 Score: 562
Period size: 165 Copynumber: 3.5 Consensus size: 162
49031 TTCCAATGTA
* ** * * * *
49041 AAATCACAATTAATATGCTATTTTGACCAAAAGAAAAGCATATATTTTATGTTTAT-TGAGGAAA
1 AAATCACAATTAAGATGCTATTTTGTGC-AAA-AAAAGCATATATTTCACGTTTGTCAGAGGAAA
* * *
49105 TTTCTTATATAAAGATAGAAAATCATACAACAAACTCTTTTTTATGCATGAAAATGCGAAGATAT
64 TTTC-TATATAAAGATAGAAAATCATACAATAACCT-TTTTTTGTGCATGAAAAT--GAAGATAT
*
49170 --CATGTTTT-TCAATGCAAAATGAACTTATAACATGT-AA
125 ACCATGTTTTCT-AATGCAAAATGAAC-TAT-ACATGTGAG
* * * ** * **
49207 AAAT-ATAATTAAGATGATATTTTGTG-ACAAAAATTATATATTTCACGTTT-TGAGAAAAAATT
1 AAATCACAATTAAGATGCTATTTTGTGCAAAAAAAGCATATATTTCACGTTTGTCAGAGGAAATT
* * * *
49269 TCCTATATAAATATTGAAAATCATACGATAAACTCTTTTTTTGTGCATGAAAATGAAAATATACC
66 T-CTATATAAAGATAGAAAATCATACAAT-AAC-CTTTTTTTGTGCATGAAAATGAAGATATACC
* *
49334 ATGTCTTGC-AATGCAAAATGAAACTATAC-TGTGTG
128 ATGT-TTTCTAATGCAAAATG-AACTATACATGTGAG
* *
49369 AAATCACAATTAAGATGCTATTTTGTGTAAAGGAAAAGCATATATTTCACGTTTGT-AGACGAAA
1 AAATCACAATTAAGATGCTATTTTGTGCAAA--AAAAGCATATATTTCACGTTTGTCAGAGGAAA
* * * *
49433 TTTACTATATAAAGATAAAAAATCATACTATAACCTATTTGTTGTGCATGAAAATGTAGATATAC
64 TTT-CTATATAAAGATAGAAAATCATACAATAACCT-TTTTTTGTGCATGAAAATGAAGATATAC
* *
49498 CATGTTTTCTAATTCAAAATGAACT-TACAATGTGGG
127 CATGTTTTCTAATGCAAAATGAACTATAC-ATGTGAG
* * *
49534 AAATCACAAATAAGATGCTATTTTGTGCAAAAACAAGCATATATTTAATGTTTGTCA-AGGAAAT
1 AAATCACAATTAAGATGCTATTTTGTGCAAAAA-AAGCATATATTTCACGTTTGTCAGAGGAAA-
49598 TTTCTATATAAAGATAGAAAATCATA
64 TTTCTATATAAAGATAGAAAATCATA
49624 TGATAGGCTC
Statistics
Matches: 348, Mismatches: 47, Indels: 46
0.79 0.11 0.10
Matches are distributed among these distances:
161 11 0.03
162 53 0.15
163 66 0.19
164 64 0.18
165 98 0.28
166 55 0.16
167 1 0.00
ACGTcount: A:0.42, C:0.11, G:0.13, T:0.34
Consensus pattern (162 bp):
AAATCACAATTAAGATGCTATTTTGTGCAAAAAAAGCATATATTTCACGTTTGTCAGAGGAAATT
TCTATATAAAGATAGAAAATCATACAATAACCTTTTTTTGTGCATGAAAATGAAGATATACCATG
TTTTCTAATGCAAAATGAACTATACATGTGAG
Found at i:61990 original size:16 final size:15
Alignment explanation
Indices: 61969--62016 Score: 60
Period size: 15 Copynumber: 3.1 Consensus size: 15
61959 TAATGTAGAG
61969 AAATAAAATAAATAA
1 AAATAAAATAAATAA
* *
61984 TAAATAAAAATAACTGA
1 -AAAT-AAAATAAATAA
62001 AAATAAAATAAATAA
1 AAATAAAATAAATAA
62016 A
1 A
62017 GAAAAAGGTT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
15 10 0.37
16 8 0.30
17 9 0.33
ACGTcount: A:0.75, C:0.02, G:0.02, T:0.21
Consensus pattern (15 bp):
AAATAAAATAAATAA
Found at i:62072 original size:15 final size:15
Alignment explanation
Indices: 62039--62076 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
62029 TGTTGCGTAA
62039 TGGGTAAATAGGCTAG
1 TGGGTAAATA-GCTAG
62055 TGGGTAAAT-GCATAG
1 TGGGTAAATAGC-TAG
62070 TGGGTAA
1 TGGGTAA
62077 TGGGTAAATG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 2 0.10
15 10 0.48
16 9 0.43
ACGTcount: A:0.32, C:0.05, G:0.37, T:0.26
Consensus pattern (15 bp):
TGGGTAAATAGCTAG
Found at i:89737 original size:21 final size:20
Alignment explanation
Indices: 89703--89742 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
89693 GTTTGAAGAA
89703 AAAGAAAAAAAAAATAAAAT
1 AAAGAAAAAAAAAATAAAAT
*
89723 AAAGAAAAAGGAAAATAAAA
1 AAAGAAAAA-AAAAATAAAA
89743 CTCCCTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.82, C:0.00, G:0.10, T:0.07
Consensus pattern (20 bp):
AAAGAAAAAAAAAATAAAAT
Found at i:89914 original size:6 final size:7
Alignment explanation
Indices: 89895--89919 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
89885 TTTTTTAACC
89895 TATTTTT
1 TATTTTT
89902 TATTTTT
1 TATTTTT
89909 TATTTTT
1 TATTTTT
89916 TATT
1 TATT
89920 ATATATTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (7 bp):
TATTTTT
Found at i:89926 original size:14 final size:14
Alignment explanation
Indices: 89895--89928 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
89885 TTTTTTAACC
* *
89895 TATTTTTTATTTTT
1 TATTTTTTATTATA
89909 TATTTTTTATTATA
1 TATTTTTTATTATA
89923 TATTTT
1 TATTTT
89929 AGAGGGTTAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (14 bp):
TATTTTTTATTATA
Found at i:114980 original size:67 final size:67
Alignment explanation
Indices: 114872--115004 Score: 266
Period size: 67 Copynumber: 2.0 Consensus size: 67
114862 TGGTGAAAGC
114872 TGTTAGTTCCATTGGTTTAATGAAGTTGAGTTGAAAATCCTTGATTGAGAGATCAAGGTAGTGGA
1 TGTTAGTTCCATTGGTTTAATGAAGTTGAGTTGAAAATCCTTGATTGAGAGATCAAGGTAGTGGA
114937 CG
66 CG
114939 TGTTAGTTCCATTGGTTTAATGAAGTTGAGTTGAAAATCCTTGATTGAGAGATCAAGGTAGTGGA
1 TGTTAGTTCCATTGGTTTAATGAAGTTGAGTTGAAAATCCTTGATTGAGAGATCAAGGTAGTGGA
115004 C
66 C
115005 ATAGGTCAAG
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
67 66 1.00
ACGTcount: A:0.29, C:0.09, G:0.28, T:0.35
Consensus pattern (67 bp):
TGTTAGTTCCATTGGTTTAATGAAGTTGAGTTGAAAATCCTTGATTGAGAGATCAAGGTAGTGGA
CG
Found at i:119626 original size:35 final size:35
Alignment explanation
Indices: 119553--119682 Score: 174
Period size: 35 Copynumber: 3.7 Consensus size: 35
119543 NNNNNNNNNN
*
119553 TTATTAGGCCTAATTGATTAAATTTGTTTAATCAAG
1 TTATTAGGCCTAATTGATTAAA-TTGTTTAATTAAG
* *
119589 TTATTAGGCCTAATTGATCAAATTGCTTAATTAAG
1 TTATTAGGCCTAATTGATTAAATTGTTTAATTAAG
*
119624 TTATT-GAGCCTAATTAATTAAATTGTTTAATTAAAG
1 TTATTAG-GCCTAATTGATTAAATTGTTTAATT-AAG
*
119660 -TATTGGGCCTAATTGATTAAATT
1 TTATTAGGCCTAATTGATTAAATT
119683 AAACAATTAA
Statistics
Matches: 84, Mismatches: 7, Indels: 7
0.86 0.07 0.07
Matches are distributed among these distances:
34 1 0.01
35 58 0.69
36 25 0.30
ACGTcount: A:0.35, C:0.08, G:0.14, T:0.43
Consensus pattern (35 bp):
TTATTAGGCCTAATTGATTAAATTGTTTAATTAAG
Found at i:119691 original size:70 final size:71
Alignment explanation
Indices: 119560--119696 Score: 179
Period size: 70 Copynumber: 1.9 Consensus size: 71
119550 NNNTTATTAG
* * ****
119560 GCCTAATTGATTAAATTTGTTTAATCAAGTTATTAGGCCTAATTGATCAAATTGCTTAATTAAGT
1 GCCTAATTAATTAAATTTGTTTAATAAAGTTATTAGGCCTAATTGATCAAATTAAACAATTAAGT
119625 TATTGA
66 TATTGA
* *
119631 GCCTAATTAATTAAA-TTGTTTAATTAAAG-TATTGGGCCTAATTGATTAAATTAAACAATTAAG
1 GCCTAATTAATTAAATTTGTTTAA-TAAAGTTATTAGGCCTAATTGATCAAATTAAACAATTAAG
119694 TTA
65 TTA
119697 ATTAGGCTTC
Statistics
Matches: 57, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
70 39 0.68
71 18 0.32
ACGTcount: A:0.37, C:0.09, G:0.13, T:0.41
Consensus pattern (71 bp):
GCCTAATTAATTAAATTTGTTTAATAAAGTTATTAGGCCTAATTGATCAAATTAAACAATTAAGT
TATTGA
Found at i:121156 original size:17 final size:17
Alignment explanation
Indices: 121134--121166 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
121124 ATATGCTTAT
121134 AGAAGCTCTAGCATTAC
1 AGAAGCTCTAGCATTAC
121151 AGAAGCTCTAGCATTA
1 AGAAGCTCTAGCATTA
121167 TAGCACCAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.24
Consensus pattern (17 bp):
AGAAGCTCTAGCATTAC
Found at i:121433 original size:31 final size:31
Alignment explanation
Indices: 121398--121465 Score: 84
Period size: 30 Copynumber: 2.2 Consensus size: 31
121388 CAACTTAGCT
** *
121398 TGTCACCCCATAGTTCTGCTAGCACTCAATG
1 TGTCACCCCATAAATCTGCTAGCACTCAACG
* *
121429 TGTCA-CCCATAAATCTGCTCGCACTCTACG
1 TGTCACCCCATAAATCTGCTAGCACTCAACG
121459 TGTCACC
1 TGTCACC
121466 ACAAGATGTC
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
30 25 0.81
31 6 0.19
ACGTcount: A:0.22, C:0.35, G:0.15, T:0.28
Consensus pattern (31 bp):
TGTCACCCCATAAATCTGCTAGCACTCAACG
Found at i:121471 original size:137 final size:138
Alignment explanation
Indices: 121260--121729 Score: 428
Period size: 137 Copynumber: 3.4 Consensus size: 138
121250 GGGCATGGTG
* * ** * *
121260 TGTCACCTCATAGCTT-TGCTAGCA-TTAAGTGTGTCACGTCATAAATCTACTACCACTC-AGTG
1 TGTCACCCCATAG-TTCTGCTAGCACTCAA-TGTGTCACACCATAAATCTGCT-CCACTCTAGCG
* *
121322 TGTCACCACAAGATGCCATCGACATCTAACAATTGAGGCATGGCATGTCACCCCACAATACTACA
63 TGTCACCACAAGATGTCATCGACATCTAACAATTGAGGCATGGCATGTCACCCCACAATACTGCA
*
121387 ACAACTTAGCT
128 ACAACTCAGCT
121398 TGTCACCCCATAGTTCTGCTAGCACTCAATGTGTCAC-CCATAAATCTGCTCGCACTCTA-CGTG
1 TGTCACCCCATAGTTCTGCTAGCACTCAATGTGTCACACCATAAATCTGCTC-CACTCTAGCGTG
* * ** *
121461 TCACCACAAGATGTCATTGACATCTAATC-ATTGGGGCAT--CATGTGTCACCCCACAATGTTGT
65 TCACCACAAGATGTCATCGACATCTAA-CAATTGAGGCATGGCA--TGTCACCCCACAATACTGC
*
121523 AACAACTCAGCA
127 AACAACTCAGCT
* * ** * **
121535 GGTCA-CCCATAGTTCTGTTAGCACTCAGCGTGTCACACCATATATCTGCTATTACT-TAGCAG-
1 TGTCACCCCATAGTTCTGCTAGCACTCAATGTGTCACACCATAAATCTGCT-CCACTCTAGC-GT
* * * *
121597 GTCACCACAAAATGTCATCGACATTTAACAATT-AGGCCATGGCATGTCACTCCACAGTACTGCA
64 GTCACCACAAGATGTCATCGACATCTAACAATTGAGG-CATGGCATGTCACCCCACAATACTGCA
*
121661 ACAACTCA-AT
128 ACAACTCAGCT
*** * * *
121671 GTGTCACTTTATAGTTCTGTTAGCACTCAGTGTGTCATC-CCATAAATCTGTTTCCACTC
1 -TGTCACCCCATAGTTCTGCTAGCACTCAATGTGTCA-CACCATAAATCTG-CTCCACTC
121730 AAAGTCCCTG
Statistics
Matches: 271, Mismatches: 41, Indels: 39
0.77 0.12 0.11
Matches are distributed among these distances:
135 2 0.01
136 34 0.13
137 158 0.58
138 70 0.26
139 7 0.03
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (138 bp):
TGTCACCCCATAGTTCTGCTAGCACTCAATGTGTCACACCATAAATCTGCTCCACTCTAGCGTGT
CACCACAAGATGTCATCGACATCTAACAATTGAGGCATGGCATGTCACCCCACAATACTGCAACA
ACTCAGCT
Found at i:121563 original size:30 final size:30
Alignment explanation
Indices: 121527--121602 Score: 75
Period size: 31 Copynumber: 2.5 Consensus size: 30
121517 TGTTGTAACA
*
121527 ACTCAGCAGGTCACCCATAGT-TCTGTTAGC
1 ACTCAGCAGGTCACCCATA-TATCTGCTAGC
**
121557 ACTCAGC-GTGTCACACCATATATCTGCTATT
1 ACTCAGCAG-GTCAC-CCATATATCTGCTAGC
*
121588 ACTTAGCAGGTCACC
1 ACTCAGCAGGTCACC
121603 ACAAAATGTC
Statistics
Matches: 38, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
29 1 0.03
30 14 0.37
31 22 0.58
32 1 0.03
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.28
Consensus pattern (30 bp):
ACTCAGCAGGTCACCCATATATCTGCTAGC
Found at i:125271 original size:30 final size:30
Alignment explanation
Indices: 125237--125308 Score: 74
Period size: 30 Copynumber: 2.4 Consensus size: 30
125227 AATCGAAAGA
125237 AAACA-AAAATCCAAGAGTGAAACCCAACCT
1 AAACACAAAA-CCAAGAGTGAAACCCAACCT
* * * *
125267 AAACACTAAACCAAGATTGAAACCTAGCCT
1 AAACACAAAACCAAGAGTGAAACCCAACCT
* *
125297 AAAAACTAAACC
1 AAACACAAAACC
125309 TAAACCCTAA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
30 33 0.92
31 3 0.08
ACGTcount: A:0.53, C:0.26, G:0.08, T:0.12
Consensus pattern (30 bp):
AAACACAAAACCAAGAGTGAAACCCAACCT
Found at i:128947 original size:21 final size:21
Alignment explanation
Indices: 128923--128966 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
128913 TTCTAGCAAT
* *
128923 TTCAGATAGGCCTCCAATAGC
1 TTCAGAAAGGCCACCAATAGC
*
128944 TTCAGAAAGGCCACCATTAGC
1 TTCAGAAAGGCCACCAATAGC
128965 TT
1 TT
128967 TAATTTTGCC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (21 bp):
TTCAGAAAGGCCACCAATAGC
Found at i:129009 original size:21 final size:21
Alignment explanation
Indices: 128979--129034 Score: 58
Period size: 21 Copynumber: 2.7 Consensus size: 21
128969 ATTTTGCCTT
* *
128979 CAGCAACTTCAGATAGGCTTT
1 CAGCAGCTTCAGATAGGCTTC
* * *
129000 TAGCAGCTTCAAATGGGCTTC
1 CAGCAGCTTCAGATAGGCTTC
*
129021 CAACAGCTTCAGAT
1 CAGCAGCTTCAGAT
129035 GAGCCACCAG
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.27
Consensus pattern (21 bp):
CAGCAGCTTCAGATAGGCTTC
Found at i:129048 original size:21 final size:21
Alignment explanation
Indices: 129001--129050 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 21
128991 ATAGGCTTTT
* **
129001 AGCAGCTTCAAATGGGCTTCC
1 AGCAGCTTCAAATGAGCCACC
* *
129022 AACAGCTTCAGATGAGCCACC
1 AGCAGCTTCAAATGAGCCACC
129043 AGCAGCTT
1 AGCAGCTT
129051 TAATTTGGCC
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (21 bp):
AGCAGCTTCAAATGAGCCACC
Found at i:129259 original size:21 final size:21
Alignment explanation
Indices: 129235--129283 Score: 80
Period size: 21 Copynumber: 2.3 Consensus size: 21
129225 TATCAAAATA
*
129235 ATCTCCATTTAAACTTTCTTC
1 ATCTCCATTTAAACGTTCTTC
*
129256 ATCTTCATTTAAACGTTCTTC
1 ATCTCCATTTAAACGTTCTTC
129277 ATCTCCA
1 ATCTCCA
129284 AGTTCATTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.24, C:0.29, G:0.02, T:0.45
Consensus pattern (21 bp):
ATCTCCATTTAAACGTTCTTC
Found at i:130766 original size:21 final size:21
Alignment explanation
Indices: 130742--130790 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
130732 TACCAAAATA
130742 ATCTCCATTTAAACT-TTCTTC
1 ATCTCCATTTAAA-TGTTCTTC
* *
130763 ATCTTCATTTAAATGTTCTTT
1 ATCTCCATTTAAATGTTCTTC
130784 ATCTCCA
1 ATCTCCA
130791 AGTTCATTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 1 0.04
21 23 0.96
ACGTcount: A:0.24, C:0.24, G:0.02, T:0.49
Consensus pattern (21 bp):
ATCTCCATTTAAATGTTCTTC
Found at i:132112 original size:21 final size:21
Alignment explanation
Indices: 132088--132136 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
132078 TATCAAAATA
* *
132088 ATCTCCATTTAAACCTTTTTT
1 ATCTCCATTTAAACCTTCTTC
* *
132109 ATCTTCATTTAAACGTTCTTC
1 ATCTCCATTTAAACCTTCTTC
132130 ATCTCCA
1 ATCTCCA
132137 AGTTCATTAT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.24, C:0.27, G:0.02, T:0.47
Consensus pattern (21 bp):
ATCTCCATTTAAACCTTCTTC
Found at i:142668 original size:97 final size:98
Alignment explanation
Indices: 142502--142690 Score: 263
Period size: 97 Copynumber: 1.9 Consensus size: 98
142492 NNNNNNNNNN
* * * * *
142502 GGTTAGGTTGCTACATGCCATGTATAAGAACATATTACACACCATTGTTAAGTTGTTACACGTCA
1 GGTTAGGTTGCTACATGCCATATATAAAAACATATTACACACCATGGTTAAGTTGGTACACGCCA
142567 TGTTG-AAAAAAAATACTGTTATTACACAACAT
66 TGTTGAAAAAAAAATACTGTTATTACACAACAT
* * ** * *
142599 GGTTAGGTTGTTACATGCCATATATAAAAACATGTTACATTCTATGGTTAGGTTGGTACACGCCA
1 GGTTAGGTTGCTACATGCCATATATAAAAACATATTACACACCATGGTTAAGTTGGTACACGCCA
*
142664 TGTTGAAAAAAAAATATTGTTATTACA
66 TGTTGAAAAAAAAATACTGTTATTACA
142691 TGCCATATAC
Statistics
Matches: 79, Mismatches: 12, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
97 59 0.75
98 20 0.25
ACGTcount: A:0.35, C:0.14, G:0.17, T:0.33
Consensus pattern (98 bp):
GGTTAGGTTGCTACATGCCATATATAAAAACATATTACACACCATGGTTAAGTTGGTACACGCCA
TGTTGAAAAAAAAATACTGTTATTACACAACAT
Found at i:142864 original size:84 final size:83
Alignment explanation
Indices: 142672--142872 Score: 233
Period size: 83 Copynumber: 2.4 Consensus size: 83
142662 CATGTTGAAA
* **
142672 AAAAAATATTGTTATTACATGCCATATACCAAAACATGTTACAAGCCATGTTAAAAAAAATGTNN
1 AAAAAATATTGTTATTACATGCCATATACAAAAACATGTTACAAGCCATGTTAAAAAAAATGTTG
********
142737 NNNNNNNNTGCCATGTTG
66 CTGCTACATGCCATGTTG
**
142755 AAAAAATATTGTTATTACACACCATATACAAAAACATGTTACACA-CCATGTTAAAACAAAATGT
1 AAAAAATATTGTTATTACATGCCATATACAAAAACATGTTACA-AGCCATGTTAAAA-AAAATGT
142819 TGCTGCTACATGCCATGTTG
64 TGCTGCTACATGCCATGTTG
* * *
142839 AAAAAATATTTTTGTTACATGCCATATTCAAAAA
1 AAAAAATATTGTTATTACATGCCATATACAAAAA
142873 TATTTTGTTA
Statistics
Matches: 98, Mismatches: 18, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
83 51 0.52
84 47 0.48
ACGTcount: A:0.41, C:0.15, G:0.10, T:0.29
Consensus pattern (83 bp):
AAAAAATATTGTTATTACATGCCATATACAAAAACATGTTACAAGCCATGTTAAAAAAAATGTTG
CTGCTACATGCCATGTTG
Found at i:142879 original size:27 final size:29
Alignment explanation
Indices: 142825--142884 Score: 88
Period size: 29 Copynumber: 2.1 Consensus size: 29
142815 ATGTTGCTGC
*
142825 TACATGCCATGTTGAAAAAATATTTTTGT
1 TACATGCCATATTGAAAAAATATTTTTGT
*
142854 TACATGCCATATT-CAAAAATA-TTTTGT
1 TACATGCCATATTGAAAAAATATTTTTGT
142881 TACA
1 TACA
142885 CTTTAATGCC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 10 0.34
28 7 0.24
29 12 0.41
ACGTcount: A:0.37, C:0.13, G:0.10, T:0.40
Consensus pattern (29 bp):
TACATGCCATATTGAAAAAATATTTTTGT
Found at i:147543 original size:45 final size:45
Alignment explanation
Indices: 147468--147675 Score: 193
Period size: 45 Copynumber: 4.4 Consensus size: 45
147458 CCATGATGTC
* * *
147468 ACATGCCATGCATAAAAAAATGTTACACACCATGGTTAGGTTGTT
1 ACATGCCATGTATAAAAAAATATTATACACCATGGTTAGGTTGTT
* *
147513 ACATGCCATGTATAAAAACATATTATACACCATTGTTAGGTTGTT
1 ACATGCCATGTATAAAAAAATATTATACACCATGGTTAGGTTGTT
* *
147558 ACATGTCATGTTAAAAAAAAAATACTGTTATTACACAACATGGTTAGGTTGTT
1 ACATGCCATG-T-ATAAAAAAATA---TTA-TACAC--CATGGTTAGGTTGTT
** * ** * *
147611 ACATGCCATGTATAAAAGCATGTTATATGCTATGGTTAGGTTGGT
1 ACATGCCATGTATAAAAAAATATTATACACCATGGTTAGGTTGTT
*
147656 ACACGCCATGT-TGAAAAAAA
1 ACATGCCATGTAT-AAAAAAA
147676 AATACTGTAT
Statistics
Matches: 133, Mismatches: 21, Indels: 18
0.77 0.12 0.10
Matches are distributed among these distances:
44 1 0.01
45 77 0.58
46 1 0.01
47 12 0.09
48 3 0.02
50 3 0.02
51 12 0.09
52 1 0.01
53 23 0.17
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.32
Consensus pattern (45 bp):
ACATGCCATGTATAAAAAAATATTATACACCATGGTTAGGTTGTT
Found at i:147604 original size:53 final size:49
Alignment explanation
Indices: 147490--147627 Score: 158
Period size: 53 Copynumber: 2.8 Consensus size: 49
147480 TAAAAAAATG
* *
147490 TTACACACCATGGTTAGGTTGTTACATGCCATG-T-ATAAAAACATATTA
1 TTACACA-CATGGTTAGGTTGTTACATGCCATGTTAAAAAAAAAATATTA
* *
147538 -TACAC-CATTGTTAGGTTGTTACATGTCATGTTAAAAAAAAAATACTGTTA
1 TTACACACATGGTTAGGTTGTTACATGCCATGTTAAAAAAAAAATA---TTA
147588 TTACACAACATGGTTAGGTTGTTACATGCCATGTATAAAA
1 TTACAC-ACATGGTTAGGTTGTTACATGCCATGT-TAAAA
147628 GCATGTTATA
Statistics
Matches: 75, Mismatches: 6, Indels: 12
0.81 0.06 0.13
Matches are distributed among these distances:
45 23 0.31
46 1 0.01
47 14 0.19
50 3 0.04
51 5 0.07
53 24 0.32
54 5 0.07
ACGTcount: A:0.36, C:0.14, G:0.15, T:0.34
Consensus pattern (49 bp):
TTACACACATGGTTAGGTTGTTACATGCCATGTTAAAAAAAAAATATTA
Found at i:147666 original size:98 final size:97
Alignment explanation
Indices: 147490--147689 Score: 292
Period size: 98 Copynumber: 2.1 Consensus size: 97
147480 TAAAAAAATG
* *
147490 TTACACACCATGGTTAGGTTGTTACATGCCATGTATAAAAACATATTATACACCATTGTTAGGTT
1 TTACACAACATGGTTAGGTTGTTACATGCCATGTATAAAAACATATTATACACCATGGTTAGGTT
* * *
147555 GTTACATGTCATGTTAAAAAAAAAATACTGTTA
66 GGTACACGCCATGTTAAAAAAAAAATACTG-TA
* * ** *
147588 TTACACAACATGGTTAGGTTGTTACATGCCATGTATAAAAGCATGTTATATGCTATGGTTAGGTT
1 TTACACAACATGGTTAGGTTGTTACATGCCATGTATAAAAACATATTATACACCATGGTTAGGTT
*
147653 GGTACACGCCATGTTGAAAAAAAAATACTGTA
66 GGTACACGCCATGTTAAAAAAAAAATACTGTA
147685 TTACA
1 TTACA
147690 TGCCATATAC
Statistics
Matches: 91, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
97 7 0.08
98 84 0.92
ACGTcount: A:0.35, C:0.14, G:0.17, T:0.34
Consensus pattern (97 bp):
TTACACAACATGGTTAGGTTGTTACATGCCATGTATAAAAACATATTATACACCATGGTTAGGTT
GGTACACGCCATGTTAAAAAAAAAATACTGTA
Found at i:150594 original size:20 final size:20
Alignment explanation
Indices: 150569--150644 Score: 71
Period size: 20 Copynumber: 3.8 Consensus size: 20
150559 AATGCTCATC
*
150569 ATCTATCAATAGATAAGGCT
1 ATCTATCAATAGATGAGGCT
* ***
150589 ATCTATCGATAGATGTTCCT
1 ATCTATCAATAGATGAGGCT
* *
150609 CAACTATCAATAGATGAGGCA
1 -ATCTATCAATAGATGAGGCT
*
150630 ATCTATCGATAGATG
1 ATCTATCAATAGATG
150645 TGTAGCATCT
Statistics
Matches: 42, Mismatches: 13, Indels: 2
0.74 0.23 0.04
Matches are distributed among these distances:
20 28 0.67
21 14 0.33
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.30
Consensus pattern (20 bp):
ATCTATCAATAGATGAGGCT
Found at i:150616 original size:41 final size:41
Alignment explanation
Indices: 150547--150645 Score: 135
Period size: 41 Copynumber: 2.4 Consensus size: 41
150537 TTTTGATAAA
* * * *
150547 TATCTATCAATAAATGCTCATCATCTATCAATAGATAAGGC
1 TATCTATCGATAGATGTTCATCAACTATCAATAGATAAGGC
* *
150588 TATCTATCGATAGATGTTCCTCAACTATCAATAGATGAGGC
1 TATCTATCGATAGATGTTCATCAACTATCAATAGATAAGGC
*
150629 AATCTATCGATAGATGT
1 TATCTATCGATAGATGT
150646 GTAGCATCTA
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.35, C:0.18, G:0.14, T:0.32
Consensus pattern (41 bp):
TATCTATCGATAGATGTTCATCAACTATCAATAGATAAGGC
Found at i:150657 original size:41 final size:41
Alignment explanation
Indices: 150548--150665 Score: 130
Period size: 41 Copynumber: 2.9 Consensus size: 41
150538 TTTGATAAAT
* * * * *
150548 ATCTATCAATAAATGCTCATCATCTATCAATAGATAAGGCT
1 ATCTATCGATAGATGTTCAGCATCTATCAATAGATAAGGCA
** * *
150589 ATCTATCGATAGATGTTCCTCAACTATCAATAGATGAGGCA
1 ATCTATCGATAGATGTTCAGCATCTATCAATAGATAAGGCA
*
150630 ATCTATCGATAGATGTGT-AGCATCTATCGATAGATA
1 ATCTATCGATAGATGT-TCAGCATCTATCAATAGATA
150666 GCAAATTGAG
Statistics
Matches: 64, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
41 63 0.98
42 1 0.02
ACGTcount: A:0.36, C:0.18, G:0.15, T:0.31
Consensus pattern (41 bp):
ATCTATCGATAGATGTTCAGCATCTATCAATAGATAAGGCA
Found at i:158771 original size:63 final size:63
Alignment explanation
Indices: 158649--158773 Score: 151
Period size: 63 Copynumber: 2.0 Consensus size: 63
158639 NNNNNNNNNN
* * * * * * *
158649 AAATTTTATAATTTTGTCATTTCAATAATTTTTAAATTTTTATAACTTGCCTTTGTTTTTAAA
1 AAATTTTATAATTTTGCCATTACAAAAATTTTAAAATTTTTATAACATACATTTGTTTTTAAA
* * * *
158712 AAATTTTATAATTTTGCCCTTACAAAAATTTTAAAATTTTTCTAACATATATTTTTTTTTAA
1 AAATTTTATAATTTTGCCATTACAAAAATTTTAAAATTTTTATAACATACATTTGTTTTTAA
158774 TTTATAATTT
Statistics
Matches: 51, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
63 51 1.00
ACGTcount: A:0.34, C:0.09, G:0.03, T:0.54
Consensus pattern (63 bp):
AAATTTTATAATTTTGCCATTACAAAAATTTTAAAATTTTTATAACATACATTTGTTTTTAAA
Found at i:164880 original size:55 final size:55
Alignment explanation
Indices: 164761--164883 Score: 151
Period size: 55 Copynumber: 2.3 Consensus size: 55
164751 TATGTTAGAA
* * * *
164761 AAATTTT-AAAATTTTTGTAAGGGCAAAATTATAAAATTTTTAAAAAATAAAGGC
1 AAATTTTAAAAATTATTGAAAGGACAAAATTATAAAATTTTTAAAAAATAAAGAC
* * * *
164815 AAGTTATAAAAATTATTGAAATGACAAAATTATAAAATTTTTAAAAAATACAA-AT
1 AAATTTTAAAAATTATTGAAAGGACAAAATTATAAAATTTTTAAAAAATA-AAGAC
164870 AAATTTTAAAAATT
1 AAATTTTAAAAATT
164884 TAAAAATTGT
Statistics
Matches: 57, Mismatches: 10, Indels: 3
0.81 0.14 0.04
Matches are distributed among these distances:
54 5 0.09
55 50 0.88
56 2 0.04
ACGTcount: A:0.54, C:0.03, G:0.07, T:0.35
Consensus pattern (55 bp):
AAATTTTAAAAATTATTGAAAGGACAAAATTATAAAATTTTTAAAAAATAAAGAC
Found at i:172289 original size:133 final size:133
Alignment explanation
Indices: 172041--172290 Score: 315
Period size: 133 Copynumber: 1.9 Consensus size: 133
172031 ATGAGTTGAC
* * * *
172041 CAAAATAACCTTCAATACATTACCAAGGAATTAATCCTTATACACCTCCTTCTCTCTCGCTATAC
1 CAAAATAACCTTCAATACATTACCAAGGAATTAATCCTTATACACCTCCCTCCCTCCCGCAATAC
* * ** * *
172106 AGACAAATTAAATGCTCTTTCATCTCTGTTAGCTCTCTCAATTCCTTAAACTTTCTCAACTTTCC
66 AAACAAATTAAATACTCTTTCATCTCCATCAGCTCTCTCAATTCCCTAAACTTTCTCAACTTTCC
172171 TAG
131 TAG
* * * * * *
172174 CAAAATAACTTTCAATACATTA-TAGAGGACTTAATCCTTATATATCTCCCTCCCTCCCGCAATG
1 CAAAATAACCTTCAATACATTACCA-AGGAATTAATCCTTATACACCTCCCTCCCTCCCGCAATA
*
172238 CAAACAAATTAAATACTCTCTT-ATCTCCATCAGCTCTCTCATTTCCCTAAACT
65 CAAACAAATTAAATACTCT-TTCATCTCCATCAGCTCTCTCAATTCCCTAAACT
172291 CTATCAGCTC
Statistics
Matches: 98, Mismatches: 17, Indels: 4
0.82 0.14 0.03
Matches are distributed among these distances:
132 1 0.01
133 95 0.97
134 2 0.02
ACGTcount: A:0.31, C:0.29, G:0.06, T:0.34
Consensus pattern (133 bp):
CAAAATAACCTTCAATACATTACCAAGGAATTAATCCTTATACACCTCCCTCCCTCCCGCAATAC
AAACAAATTAAATACTCTTTCATCTCCATCAGCTCTCTCAATTCCCTAAACTTTCTCAACTTTCC
TAG
Found at i:178073 original size:21 final size:21
Alignment explanation
Indices: 178047--178087 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
178037 AATGATGAGC
*
178047 CTTATGATTTGCTCGAAGAGG
1 CTTATGATTTCCTCGAAGAGG
178068 CTTATGATTTCCTCGAAGAG
1 CTTATGATTTCCTCGAAGAG
178088 ATAGCTTCTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.24, C:0.17, G:0.24, T:0.34
Consensus pattern (21 bp):
CTTATGATTTCCTCGAAGAGG
Found at i:178551 original size:21 final size:21
Alignment explanation
Indices: 178527--178590 Score: 74
Period size: 21 Copynumber: 3.0 Consensus size: 21
178517 AAGACTAACA
*
178527 CATTCATGACAAAGACTGGTG
1 CATTCATGACAAAGACTGATG
* *
178548 CATTCGTAACAAAGACTGATG
1 CATTCATGACAAAGACTGATG
* * *
178569 CATTTATGATAAGGACTGATG
1 CATTCATGACAAAGACTGATG
178590 C
1 C
178591 CTCCATTCAA
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.27
Consensus pattern (21 bp):
CATTCATGACAAAGACTGATG
Found at i:180358 original size:15 final size:16
Alignment explanation
Indices: 180340--180377 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 16
180330 CATTTATCCA
180340 TTACCCACTA-CGC-AT
1 TTACCCACTAGC-CTAT
180355 TTACCCACTAGCCTAT
1 TTACCCACTAGCCTAT
180371 TTACCCA
1 TTACCCA
180378 TTTACCCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 11 0.52
16 10 0.48
ACGTcount: A:0.26, C:0.39, G:0.05, T:0.29
Consensus pattern (16 bp):
TTACCCACTAGCCTAT
Found at i:180382 original size:8 final size:8
Alignment explanation
Indices: 180319--180387 Score: 56
Period size: 8 Copynumber: 9.0 Consensus size: 8
180309 TTATTTGGAC
180319 TACCCA-T
1 TACCCATT
180326 TACCCATT
1 TACCCATT
*
180334 TATCCA-T
1 TACCCATT
*
180341 TACCCA-C
1 TACCCATT
*
180348 TACGCATT
1 TACCCATT
*
180356 TACCCA-C
1 TACCCATT
*
180363 TAGCCTATT
1 TA-CCCATT
180372 TACCCATT
1 TACCCATT
180380 TACCCATT
1 TACCCATT
180388 ACACAACAAA
Statistics
Matches: 48, Mismatches: 10, Indels: 7
0.74 0.15 0.11
Matches are distributed among these distances:
7 19 0.40
8 27 0.56
9 2 0.04
ACGTcount: A:0.26, C:0.38, G:0.03, T:0.33
Consensus pattern (8 bp):
TACCCATT
Found at i:180437 original size:16 final size:16
Alignment explanation
Indices: 180413--180455 Score: 61
Period size: 16 Copynumber: 2.7 Consensus size: 16
180403 TTTTCTTTAT
180413 TTATTTTATTT-TTAG
1 TTATTTTATTTATTAG
*
180428 TTATTTTTATTTATTAT
1 TTA-TTTTATTTATTAG
180445 TTATTTTATTT
1 TTATTTTATTT
180456 CTCTACATTA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
15 3 0.12
16 16 0.64
17 6 0.24
ACGTcount: A:0.21, C:0.00, G:0.02, T:0.77
Consensus pattern (16 bp):
TTATTTTATTTATTAG
Found at i:189842 original size:1 final size:1
Alignment explanation
Indices: 189707--189825 Score: 175
Period size: 1 Copynumber: 119.0 Consensus size: 1
189697 AAATTTATTC
*
189707 TTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * * * *
189772 TTTTTTTCTCTTTTTTTTCTTCTTTTTTTTTCTTTTTTTTTTTCTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
189826 CTTCTTATCT
Statistics
Matches: 104, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
1 104 1.00
ACGTcount: A:0.01, C:0.05, G:0.00, T:0.94
Consensus pattern (1 bp):
T
Found at i:189843 original size:53 final size:50
Alignment explanation
Indices: 189704--189843 Score: 198
Period size: 47 Copynumber: 2.8 Consensus size: 50
189694 TAGAAATTTA
*
189704 TTCTTTTTTTTTTTTTTTTTTTATTTTTT-T-TTTTTTTT-TTTTTTTTTT
1 TTCTTTTTTTTTTTTTTTTTTT-TTTTTTATCTTTTTTTTCTTCTTTTTTT
*
189752 TT-TTTTTTTTTTTTTTTTTTTTTTTTTCTCTTTTTTTTCTTCTTTTTTT
1 TTCTTTTTTTTTTTTTTTTTTTTTTTTTATCTTTTTTTTCTTCTTTTTTT
189801 TTCTTTTTTTTTTTCTTTTTTTTTTCTTCTTATCTTTTTTTTC
1 TTCTTTTTTTTTTT-TTTTTTTTTT-TT-TTATCTTTTTTTTC
189844 AATATTTCAT
Statistics
Matches: 83, Mismatches: 2, Indels: 9
0.88 0.02 0.10
Matches are distributed among these distances:
46 6 0.07
47 20 0.24
48 10 0.12
49 11 0.13
50 11 0.13
51 10 0.12
52 2 0.02
53 13 0.16
ACGTcount: A:0.01, C:0.08, G:0.00, T:0.91
Consensus pattern (50 bp):
TTCTTTTTTTTTTTTTTTTTTTTTTTTTATCTTTTTTTTCTTCTTTTTTT
Found at i:195368 original size:17 final size:19
Alignment explanation
Indices: 195348--195387 Score: 50
Period size: 17 Copynumber: 2.3 Consensus size: 19
195338 TTTTTATATT
195348 ATATGTT-AATATA-TAAA
1 ATATGTTAAATATATTAAA
*
195365 ATAT-TTAAATTTATTAAA
1 ATATGTTAAATATATTAAA
195383 ATATG
1 ATATG
195388 ACTACCGAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 4
0.79 0.04 0.17
Matches are distributed among these distances:
16 2 0.11
17 9 0.47
18 8 0.42
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (19 bp):
ATATGTTAAATATATTAAA
Found at i:201975 original size:16 final size:16
Alignment explanation
Indices: 201954--201984 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
201944 TAAAATTTAT
201954 ATTTTAATTCTTTTGG
1 ATTTTAATTCTTTTGG
*
201970 ATTTTAATTTTTTTG
1 ATTTTAATTCTTTTG
201985 ATATTTTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.03, G:0.10, T:0.68
Consensus pattern (16 bp):
ATTTTAATTCTTTTGG
Found at i:205725 original size:12 final size:12
Alignment explanation
Indices: 205708--205733 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
205698 NNNNNNNTCA
205708 CAAATCACTTAT
1 CAAATCACTTAT
205720 CAAATCACTTAT
1 CAAATCACTTAT
205732 CA
1 CA
205734 TTTTCTAGCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.27, G:0.00, T:0.31
Consensus pattern (12 bp):
CAAATCACTTAT
Found at i:220064 original size:16 final size:16
Alignment explanation
Indices: 220034--220064 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
220024 AGTTTATTTA
220034 TTAATCAAGATATTAT
1 TTAATCAAGATATTAT
*
220050 TTAATCAATATATTA
1 TTAATCAAGATATTA
220065 ATAATTTACT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.45, C:0.06, G:0.03, T:0.45
Consensus pattern (16 bp):
TTAATCAAGATATTAT
Found at i:237446 original size:17 final size:17
Alignment explanation
Indices: 237409--237459 Score: 61
Period size: 17 Copynumber: 3.1 Consensus size: 17
237399 GTTTCTTATG
*
237409 CATTTGGGTTATG-ATC
1 CATTTGGGTTATGAAAC
237425 TCATTTGGGTTATGAAAC
1 -CATTTGGGTTATGAAAC
*
237443 CATTTAGGTTAT-AAAC
1 CATTTGGGTTATGAAAC
237459 C
1 C
237460 CATCATTCCC
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
16 5 0.16
17 24 0.77
18 2 0.06
ACGTcount: A:0.27, C:0.14, G:0.20, T:0.39
Consensus pattern (17 bp):
CATTTGGGTTATGAAAC
Found at i:237819 original size:36 final size:36
Alignment explanation
Indices: 237772--237845 Score: 139
Period size: 36 Copynumber: 2.1 Consensus size: 36
237762 AGCTAAGTAG
237772 ATATTCCTAGCTCTAATAAACTTAGAATTACTCCTA
1 ATATTCCTAGCTCTAATAAACTTAGAATTACTCCTA
*
237808 ATATTCCTAGCTCTGATAAACTTAGAATTACTCCTA
1 ATATTCCTAGCTCTAATAAACTTAGAATTACTCCTA
237844 AT
1 AT
237846 CTCCTGAAGA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.35, C:0.22, G:0.07, T:0.36
Consensus pattern (36 bp):
ATATTCCTAGCTCTAATAAACTTAGAATTACTCCTA
Found at i:242201 original size:16 final size:15
Alignment explanation
Indices: 242180--242227 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
242170 TAATGTAGAG
242180 AAATAAAATAAATAA
1 AAATAAAATAAATAA
** *
242195 TAAATAAAAATATTTGA
1 -AAAT-AAAATAAATAA
242212 AAATAAAATAAATAA
1 AAATAAAATAAATAA
242227 A
1 A
242228 GAAAAAGGTT
Statistics
Matches: 25, Mismatches: 6, Indels: 3
0.74 0.18 0.09
Matches are distributed among these distances:
15 9 0.36
16 8 0.32
17 8 0.32
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.25
Consensus pattern (15 bp):
AAATAAAATAAATAA
Found at i:242560 original size:10 final size:10
Alignment explanation
Indices: 242545--242582 Score: 60
Period size: 10 Copynumber: 3.8 Consensus size: 10
242535 ACTTACCATT
242545 TTTTTTTAAA
1 TTTTTTTAAA
242555 TTTTTTT-AA
1 TTTTTTTAAA
242564 TTTTTTTAAA
1 TTTTTTTAAA
242574 TTATTTTTA
1 TT-TTTTTA
242583 CATGAACCTG
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.35
10 11 0.42
11 6 0.23
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (10 bp):
TTTTTTTAAA
Found at i:242569 original size:19 final size:20
Alignment explanation
Indices: 242545--242582 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
242535 ACTTACCATT
242545 TTTTTTTAAATT-TTTTTAA
1 TTTTTTTAAATTATTTTTAA
242564 TTTTTTTAAATTATTTTTA
1 TTTTTTTAAATTATTTTTA
242583 CATGAACCTG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (20 bp):
TTTTTTTAAATTATTTTTAA
Found at i:243578 original size:94 final size:94
Alignment explanation
Indices: 243413--243588 Score: 291
Period size: 94 Copynumber: 1.9 Consensus size: 94
243403 ATACTACCAA
* *
243413 TAGTGTAAGGAATAGAAAAACTCCCTAGATCTTTAAGCTTTGATGGAAGCTTGTTTTGGATTATA
1 TAGTGCAAGGAATAGAAAAACTCCCTAGATCTTTAAGCTTTGATGGAAGCTTATTTTGGATTATA
*
243478 ATACTAAACTCTTCAGTGAGTGTAACTGT
66 ACACTAAACTCTTCAGTGAGTGTAACTGT
*
243507 TAGTGCAAGGAATAGAAAAACTCCCTGGATCTTTAAGCTTT-AGTGGAAGCTTATTTTGGATTAT
1 TAGTGCAAGGAATAGAAAAACTCCCTAGATCTTTAAGCTTTGA-TGGAAGCTTATTTTGGATTAT
*
243571 AGCACTAAACTCTTCAGT
65 AACACTAAACTCTTCAGT
243589 AAATGCAACT
Statistics
Matches: 76, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
93 1 0.01
94 75 0.99
ACGTcount: A:0.32, C:0.14, G:0.20, T:0.34
Consensus pattern (94 bp):
TAGTGCAAGGAATAGAAAAACTCCCTAGATCTTTAAGCTTTGATGGAAGCTTATTTTGGATTATA
ACACTAAACTCTTCAGTGAGTGTAACTGT
Found at i:244147 original size:21 final size:21
Alignment explanation
Indices: 244108--244193 Score: 100
Period size: 21 Copynumber: 4.0 Consensus size: 21
244098 AATGGCGACC
* * *
244108 TCAGTCCTTATCATAAATGCA
1 TCAGTCTTTGTCATGAATGCA
* *
244129 TCAGTTTTTGTTATGAATGCA
1 TCAGTCTTTGTCATGAATGCA
*
244150 TCAGTCTTTGTCATGAATGCG
1 TCAGTCTTTGTCATGAATGCA
*
244171 TCAATCTTTGTCATGAATTGCA
1 TCAGTCTTTGTCATGAA-TGCA
244193 T
1 T
244194 GAACATATCC
Statistics
Matches: 54, Mismatches: 10, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
21 50 0.93
22 4 0.07
ACGTcount: A:0.26, C:0.17, G:0.16, T:0.41
Consensus pattern (21 bp):
TCAGTCTTTGTCATGAATGCA
Found at i:249857 original size:4 final size:4
Alignment explanation
Indices: 249848--249884 Score: 65
Period size: 4 Copynumber: 9.2 Consensus size: 4
249838 GCTAGAGAAC
*
249848 TATG TATG TATG TATG TATG TATG CATG TATG TATG T
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG T
249885 GAATGTGATT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.24, C:0.03, G:0.24, T:0.49
Consensus pattern (4 bp):
TATG
Found at i:259708 original size:24 final size:24
Alignment explanation
Indices: 259681--259727 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
259671 TTCTAAAACA
259681 AATTTACT-ATTTAATTTTATCTTC
1 AATTTACTAATTTAATTTT-TCTTC
*
259705 AATTTATTAATTTAATTTTTCTT
1 AATTTACTAATTTAATTTTTCTT
259728 TTTAGTAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 11 0.52
25 10 0.48
ACGTcount: A:0.30, C:0.09, G:0.00, T:0.62
Consensus pattern (24 bp):
AATTTACTAATTTAATTTTTCTTC
Found at i:261611 original size:48 final size:48
Alignment explanation
Indices: 261519--261629 Score: 143
Period size: 48 Copynumber: 2.3 Consensus size: 48
261509 TCTTCTTCTG
* * * *
261519 ACTTGATCTTGAACAATTCTTCACACCTCAAGGTTCAACTACTTGAAT
1 ACTTGATCTTGAACAATTCTTAACACCTCAAGGGTCAACGACTTGAAA
* * *
261567 ACTTGATCTTGAACGATTCTTAATA-TTCAAGGGTCAAACGACTTGAAA
1 ACTTGATCTTGAACAATTCTTAACACCTCAAGGGTC-AACGACTTGAAA
261615 ACTTGATCTTGAACA
1 ACTTGATCTTGAACA
261630 TTTTTTCATG
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
47 8 0.15
48 46 0.85
ACGTcount: A:0.33, C:0.21, G:0.14, T:0.32
Consensus pattern (48 bp):
ACTTGATCTTGAACAATTCTTAACACCTCAAGGGTCAACGACTTGAAA
Found at i:261658 original size:40 final size:40
Alignment explanation
Indices: 261614--261694 Score: 119
Period size: 40 Copynumber: 2.0 Consensus size: 40
261604 ACGACTTGAA
* *
261614 AACTTGATCTTGAA-CATTTTTTCATGCTTCAAGGGTCTAC
1 AACTTGATCTTGAATCA-TTCTTCATGCTTCAAAGGTCTAC
*
261654 AACTTGATCTTGAATGATTCTTCATGCTTCAAAGGTCTAC
1 AACTTGATCTTGAATCATTCTTCATGCTTCAAAGGTCTAC
261694 A
1 A
261695 GTTTGCAGCC
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
40 36 0.97
41 1 0.03
ACGTcount: A:0.27, C:0.20, G:0.15, T:0.38
Consensus pattern (40 bp):
AACTTGATCTTGAATCATTCTTCATGCTTCAAAGGTCTAC
Found at i:261659 original size:48 final size:46
Alignment explanation
Indices: 261519--261660 Score: 140
Period size: 48 Copynumber: 3.0 Consensus size: 46
261509 TCTTCTTCTG
* * * * *
261519 ACTTGATCTTGAACAATTCTTCACACCTCAAGGTTCAACTACTTGAAT
1 ACTTGATCTTGAAC-ATTCTTCA-TCTTCAAGGGTCAACAACTTGAAA
* * *
261567 ACTTGATCTTGAACGATTCTTAATATTCAAGGGTCAAACGACTTGAAA
1 ACTTGATCTTGAAC-ATTCTTCATCTTCAAGGGTC-AACAACTTGAAA
* *
261615 ACTTGATCTTGAACATTTTTTCATGCTTCAAGGGTCTACAACTTGA
1 ACTTGATCTTGAACA-TTCTTCAT-CTTCAAGGGTCAACAACTTGA
261661 TCTTGAATGA
Statistics
Matches: 78, Mismatches: 13, Indels: 6
0.80 0.13 0.06
Matches are distributed among these distances:
47 9 0.12
48 59 0.76
49 10 0.13
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (46 bp):
ACTTGATCTTGAACATTCTTCATCTTCAAGGGTCAACAACTTGAAA
Found at i:265856 original size:15 final size:16
Alignment explanation
Indices: 265836--265876 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 16
265826 GAGGCGCGTA
265836 GCACGCCAG-TACGCG
1 GCACGCCAGATACGCG
*
265851 GCACG-CAGATGCGCG
1 GCACGCCAGATACGCG
*
265866 GCACGCAAGAT
1 GCACGCCAGAT
265877 GGCTCGGCAG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
14 3 0.14
15 15 0.68
16 4 0.18
ACGTcount: A:0.24, C:0.34, G:0.34, T:0.07
Consensus pattern (16 bp):
GCACGCCAGATACGCG
Found at i:272498 original size:45 final size:44
Alignment explanation
Indices: 272403--272500 Score: 124
Period size: 45 Copynumber: 2.2 Consensus size: 44
272393 TTTCAGAATG
* * *
272403 GCATGTAACAACTTAACCATGACGTGTCACATATTTTCGAATAT
1 GCATATAACAACCTAACCATGACGTGTAACATATTTTCGAATAT
* * *
272447 GACATATAACAACCTAACCATGGCGTGTAACATATTTTTGTATAT
1 G-CATATAACAACCTAACCATGACGTGTAACATATTTTCGAATAT
272492 AGCATATAA
1 -GCATATAA
272501 TATCATAGCG
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
44 1 0.02
45 44 0.96
46 1 0.02
ACGTcount: A:0.37, C:0.18, G:0.13, T:0.32
Consensus pattern (44 bp):
GCATATAACAACCTAACCATGACGTGTAACATATTTTCGAATAT
Found at i:275903 original size:20 final size:20
Alignment explanation
Indices: 275872--275925 Score: 58
Period size: 18 Copynumber: 2.8 Consensus size: 20
275862 ATTCTACCTA
* *
275872 AAATGGATCAATACATTGGC
1 AAATGTATCAATACATTGCC
*
275892 AGATGTATCAAT--ATTGCC
1 AAATGTATCAATACATTGCC
*
275910 AAATGTATCGATACAT
1 AAATGTATCAATACAT
275926 CACTAAGGAA
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
18 15 0.56
20 12 0.44
ACGTcount: A:0.39, C:0.15, G:0.17, T:0.30
Consensus pattern (20 bp):
AAATGTATCAATACATTGCC
Found at i:279060 original size:21 final size:21
Alignment explanation
Indices: 279031--279082 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
279021 GTTGCTATAC
* *
279031 ATCGATAGATGCTGCACATCT
1 ATCGATAGATGATGAACATCT
* *
279052 ATTGATAGATGATGAATATCT
1 ATCGATAGATGATGAACATCT
279073 ATCGATAGAT
1 ATCGATAGAT
279083 ATTCATCAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.35, C:0.13, G:0.19, T:0.33
Consensus pattern (21 bp):
ATCGATAGATGATGAACATCT
Found at i:285926 original size:67 final size:67
Alignment explanation
Indices: 285813--285951 Score: 224
Period size: 67 Copynumber: 2.1 Consensus size: 67
285803 TGATGGATTG
* *
285813 TTGATGATATCTAAATGTTGAACTTATTTCTGTTATGCTTTCGTGTTTGATGGATTATTAATGAC
1 TTGATGATATCTAAATGCTAAACTTATTTCTGTTATGCTTTCGTGTTTGATGGATTATTAATGAC
285878 TA
66 TA
* * *
285880 TTGATGATATCTGAATGCTAAACTTATTTCTGTTATGCTTTTGTGTTTGATGGATTGTTAATGAC
1 TTGATGATATCTAAATGCTAAACTTATTTCTGTTATGCTTTCGTGTTTGATGGATTATTAATGAC
*
285945 TG
66 TA
285947 TTGAT
1 TTGAT
285952 TGTGGAATTG
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
67 66 1.00
ACGTcount: A:0.24, C:0.09, G:0.19, T:0.48
Consensus pattern (67 bp):
TTGATGATATCTAAATGCTAAACTTATTTCTGTTATGCTTTCGTGTTTGATGGATTATTAATGAC
TA
Found at i:290303 original size:22 final size:20
Alignment explanation
Indices: 290278--290326 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 20
290268 TAAGGCAATG
290278 CTCTTCTT-CTTTTCTTTTGCTT
1 CTCTTCTTGC-TTTCTTTT--TT
290300 CTC-TCTTGCTTTCTTTTTT
1 CTCTTCTTGCTTTCTTTTTT
290319 CTCTTCTT
1 CTCTTCTT
290327 TAAGTTCTAG
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
19 5 0.20
20 4 0.16
21 12 0.48
22 4 0.16
ACGTcount: A:0.00, C:0.29, G:0.04, T:0.67
Consensus pattern (20 bp):
CTCTTCTTGCTTTCTTTTTT
Found at i:291274 original size:15 final size:16
Alignment explanation
Indices: 291254--291283 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
291244 CCACTACCTT
291254 GATTTTTC-AACCAAG
1 GATTTTTCAAACCAAG
291269 GATTTTTCAAACCAA
1 GATTTTTCAAACCAA
291284 ATCACTATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.37, C:0.20, G:0.10, T:0.33
Consensus pattern (16 bp):
GATTTTTCAAACCAAG
Found at i:291927 original size:73 final size:73
Alignment explanation
Indices: 291803--291987 Score: 235
Period size: 73 Copynumber: 2.5 Consensus size: 73
291793 TAGACAGAAT
*** * * * *
291803 GCTTTTAGTCGACTAACATTGCTACTTAGTCGATTAAGTCGTCTCTGTCTCTGAACCTAGTTTCT
1 GCTTTTAGTCGACTAACAAAACTTCTTAGTCGATTAAGTCATCTCTATCTCTGAACCCAGTTTCT
* **
291868 AGTAGTCG
66 AGCAGTAA
* *
291876 GCTTTTCGTCGACTAACAAAACTTCTTAGTCGATTAAGTCATTTCTATCTCTGAACCCAGTTTCT
1 GCTTTTAGTCGACTAACAAAACTTCTTAGTCGATTAAGTCATCTCTATCTCTGAACCCAGTTTCT
*
291941 CGCAGTAA
66 AGCAGTAA
* *
291949 GCTCTTAGTTGACTAACAAAACTTCTTAGTCGATTAAGT
1 GCTTTTAGTCGACTAACAAAACTTCTTAGTCGATTAAGT
291988 GTTCTCTGTC
Statistics
Matches: 96, Mismatches: 16, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
73 96 1.00
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.37
Consensus pattern (73 bp):
GCTTTTAGTCGACTAACAAAACTTCTTAGTCGATTAAGTCATCTCTATCTCTGAACCCAGTTTCT
AGCAGTAA
Found at i:300656 original size:18 final size:19
Alignment explanation
Indices: 300617--300660 Score: 72
Period size: 20 Copynumber: 2.3 Consensus size: 19
300607 TTAATATCTT
300617 AATATTATTTTATTCATAAA
1 AATATTATTTTATT-ATAAA
300637 AATATTATTTTATT-TAAA
1 AATATTATTTTATTATAAA
300655 AATATT
1 AATATT
300661 CTTTCCACCC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 10 0.42
20 14 0.58
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (19 bp):
AATATTATTTTATTATAAA
Found at i:308176 original size:44 final size:46
Alignment explanation
Indices: 308128--308218 Score: 109
Period size: 44 Copynumber: 2.0 Consensus size: 46
308118 ATCCCTTCAA
308128 AGATTACT-TCAAATGACGA-TAATGT-TAT-ACTACCATTCATTGAG
1 AGATTACTCT-AAATGACGATTAA-GTATATGACTACCATTCATTGAG
* * *
308172 AGATTACTCTAAATGATGATTAAGTATATGATTGCCATTCATTGAG
1 AGATTACTCTAAATGACGATTAAGTATATGACTACCATTCATTGAG
308218 A
1 A
308219 TTACTTTGGA
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
44 18 0.45
45 7 0.17
46 15 0.38
ACGTcount: A:0.36, C:0.13, G:0.15, T:0.35
Consensus pattern (46 bp):
AGATTACTCTAAATGACGATTAAGTATATGACTACCATTCATTGAG
Found at i:313119 original size:28 final size:28
Alignment explanation
Indices: 313087--313266 Score: 193
Period size: 29 Copynumber: 6.3 Consensus size: 28
313077 GGCAGCTTTT
*
313087 ACATGTTTGTTTTAATTTAGACAAGAAA
1 ACATGTTTGTCTTAATTTAGACAAGAAA
*
313115 ACATGTTTTGTCCTAATTTAGACAAGAAA
1 ACATG-TTTGTCTTAATTTAGACAAGAAA
* *
313144 ACATGTTTACTCTTAATTTTGACAAG-AA
1 ACATGTTT-GTCTTAATTTAGACAAGAAA
*
313172 ACATGTTTGTCTTAATTTAAGATAAGAAAA
1 ACATGTTTGTCTTAATTT-AGACAAG-AAA
* ***
313202 ATATGTTT-TACCTTAAACAAGACAAGAAA
1 ACATGTTTGT--CTTAATTTAGACAAGAAA
* *
313231 ACATGTTTGTCTCAATTTAGACAAGATA
1 ACATGTTTGTCTTAATTTAGACAAGAAA
313259 ACATGTTT
1 ACATGTTT
313267 TAAAAAAAAA
Statistics
Matches: 125, Mismatches: 19, Indels: 16
0.78 0.12 0.10
Matches are distributed among these distances:
27 9 0.07
28 44 0.35
29 51 0.41
30 16 0.13
31 5 0.04
ACGTcount: A:0.39, C:0.12, G:0.13, T:0.36
Consensus pattern (28 bp):
ACATGTTTGTCTTAATTTAGACAAGAAA
Found at i:339420 original size:37 final size:37
Alignment explanation
Indices: 339353--339476 Score: 109
Period size: 35 Copynumber: 3.5 Consensus size: 37
339343 TTTTGTGCTT
* *
339353 CTTCC-TCTCTCCCTCTTTTTTTTTC-G--TTTCTTC
1 CTTCCTTCTCTCTCTCTTTCTTTTTCAGCTTTTCTTC
*
339386 CTTCCTTCTATCTCTCTTTCTTTTTCAGCTTTTCTTC
1 CTTCCTTCTCTCTCTCTTTCTTTTTCAGCTTTTCTTC
* * * ***
339423 TTTCC--CTCTCTTTCTTTGTTTTTTTTCTTCTT-TTC
1 CTTCCTTCTCTCTCTCTTTCTTTTTCAGCTT-TTCTTC
339458 CTTCCTTCTCTCTCTCTTT
1 CTTCCTTCTCTCTCTCTTT
339477 TTGGCTTCCC
Statistics
Matches: 72, Mismatches: 12, Indels: 10
0.77 0.13 0.11
Matches are distributed among these distances:
33 5 0.07
34 17 0.24
35 26 0.36
36 2 0.03
37 22 0.31
ACGTcount: A:0.02, C:0.33, G:0.02, T:0.63
Consensus pattern (37 bp):
CTTCCTTCTCTCTCTCTTTCTTTTTCAGCTTTTCTTC
Found at i:345316 original size:20 final size:20
Alignment explanation
Indices: 345276--345316 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
345266 TTTAAGTTAT
* *
345276 TAATCAATTAAATTGAAAAA
1 TAATCAATAAAAATGAAAAA
*
345296 TAATCAATAAAAATGATAAA
1 TAATCAATAAAAATGAAAAA
345316 T
1 T
345317 TTTACCTCCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.61, C:0.05, G:0.05, T:0.29
Consensus pattern (20 bp):
TAATCAATAAAAATGAAAAA
Found at i:350199 original size:164 final size:163
Alignment explanation
Indices: 349465--350251 Score: 453
Period size: 164 Copynumber: 4.8 Consensus size: 163
349455 CAAAAGAAAT
* * * * * * ** *
349465 GTCTATCGTATGACTTTCCATCATTT-TAAAGAAAATTTCATTAAGAAATGTG-AAATATATGCA
1 GTCTATCATATGATTTTCCATC-TTTATATAGGAAATTTCCTCAAGAAACATGCAAA-ATATGCT
* * * * * ** ** *
349528 TCTCCTTAGCACGAAATAGCATT-TTAATTATGATTTTACATGTTATAATTTCATTTTGCATTGG
64 TTTCGTT-GCACAAAATAGCATTCTTAATTGTCATTTTACACCTTATAGCTTCATTTTGCATTAG
** * * * *
349592 AGGACACGCTATATTTACATTTTCATGTACAAAAAAAG-
128 AAAACATGATATATTTGCATTTT-A--TACACAAAAAGA
* * * * *
349630 GTCTATAATATGATTTTTCAAT-TCTTATATCGGAAATTTCAT--AGAGAA-ATGATAAATATAT
1 GTCTATCATATGA-TTTTCCATCT-TTATATAGGAAATTTCCTCAAGA-AACATG-CAAA-ATAT
* * * * ** * **
349691 GCTTTT-TTTGCTCAATATAGCA-TCTTAATTGTGATTTTGTACTTTATAATTTCATTTTGCATT
61 GCTTTTCGTTGCACAAAATAGCATTCTTAATTGTCATTTTACACCTTATAGCTTCATTTTGCATT
* *
349754 GGAAAACACGATATATTTGCATTTTATACACAAAAAGGA
126 AGAAAACATGATATATTTGCATTTTATACACAAAAA-GA
* * * *
349793 GTCT-TTAGTATGATTTTCC-TCATTCATATAGGAAATTTCCTCAAGAAACGTGCAATATATGCC
1 GTCTATCA-TATGATTTTCCATC-TTTATATAGGAAATTTCCTCAAGAAACATGCAAAATATG-C
*
349856 TCTATT--TTGCA-ATAAATAGCA-CCTTAATTGTCATTTTACACCTTATAGCTTGC-TTTTGCA
63 T-T-TTCGTTGCACA-AAATAGCATTCTTAATTGTCATTTTACACCTTATAGCTT-CATTTTGCA
* * * * *
349916 TAAGAAAAC-TCATATATTTTCATTTTCATGCA-TAAAAGTA
124 TTAGAAAACATGATATATTTGCATTTT-ATACACAAAAAG-A
* * * * * * * *
349956 GTCTATCGTATGATTTGCTATC-TTGTATAGAAAATTTCCTCAA-CAA-ATGTC-AGATAGTCCT
1 GTCTATCATATGATTTTCCATCTTTATATAGGAAATTTCCTCAAGAAACATG-CAAAATA-TGCT
* * * * *
350017 TTTCTGCTGCACAAAATAG-ATTCTTAATTGTTATTTTAC-CTGTTATCGGTTCATTTTGCATTA
64 TTTC-GTTGCACAAAATAGCATTCTTAATTGTCATTTTACAC-CTTATAGCTTCATTTTGCATTA
* * *
350080 GAAAGCATGGTATATTTGCATTATTATTCACCAAAAAGA
127 GAAAACATGATATATTTGCATT-TTATACA-CAAAAAGA
350119 GTCTATCATATGATTTTCCATCTTTATATAGGAAATTTCCTCAAGAAACATG-AAAATATGCTTT
1 GTCTATCATATGATTTTCCATCTTTATATAGGAAATTTCCTCAAGAAACATGCAAAATATGCTTT
* * * * *
350183 TCGATTGCACAAAATAGCATT-TTAATTTTGAGTTTACACGTTATAAG-TTCATTTTCCATTCA-
66 TCG-TTGCACAAAATAGCATTCTTAATTGTCATTTTACACCTTAT-AGCTTCATTTTGCATT-AG
350245 AAAACAT
128 AAAACAT
350252 AGCATATTTC
Statistics
Matches: 489, Mismatches: 87, Indels: 93
0.73 0.13 0.14
Matches are distributed among these distances:
158 2 0.00
159 1 0.00
160 11 0.02
161 61 0.12
162 64 0.13
163 74 0.15
164 211 0.43
165 32 0.07
166 33 0.07
ACGTcount: A:0.33, C:0.15, G:0.12, T:0.40
Consensus pattern (163 bp):
GTCTATCATATGATTTTCCATCTTTATATAGGAAATTTCCTCAAGAAACATGCAAAATATGCTTT
TCGTTGCACAAAATAGCATTCTTAATTGTCATTTTACACCTTATAGCTTCATTTTGCATTAGAAA
ACATGATATATTTGCATTTTATACACAAAAAGA
Found at i:350844 original size:164 final size:164
Alignment explanation
Indices: 350585--351077 Score: 369
Period size: 164 Copynumber: 3.0 Consensus size: 164
350575 CACCGTATAA
350585 TTTTCTATCTTTATATAAGAAATTTCTTTAAGAAACATGAAATATATGCTTTTCTGTAACACAAA
1 TTTTC-ATCTTTATATAAGAAATTTCTTTAAGAAACATGAAATATATGCTTTTCTGTAACACAAA
* * *
350650 ATAACATCTTAACTATGAATTTGTATGTTATTAGTTTATTTACAATGAAAAATGGGGTATATATC
65 ATAACATCTTAACTATGAATTTGTATGTTATAAGTTCATTTACAATGAAAAACGGGGTATATATC
* * * **
350715 CTTTTTTATGCACAAAAAAAAGTCTATTGTATGAT
130 CATTTTCACGCACAAAAAAAAGTCTATAATATGAT
* ** ** * **
350750 TTTTCATCTTTCTATGGGAAATTT-TATTAAGAAATGTGAAATATATGCTTTTCCT-TAGCATGA
1 TTTTCATCTTTATATAAGAAATTTCT-TTAAGAAACATGAAATATATGCTTTT-CTGTAACACAA
* * * * * * *
350813 AATAGCATCTTAATTCT-AATTT-TACATGTTATAAGTTCATTTACATTGGAGAACGTGGTATAT
64 AATAACATCTTAACTATGAATTTGT--ATGTTATAAGTTCATTTACAATGAAAAACGGGGTATAT
* * * *
350876 TTGCATTTTCACGTACAAAAAAGAGTCTATAATATGAT
127 ATCCATTTTCACGCACAAAAAAAAGTCTATAATATGAT
* * * * *
350914 TTTTCATTTTTATATTAA-AAATATC-TTAGAGAAACGTGAAACATAT-CTTTT-T-T--CCCTA
1 TTTTCATCTTTATA-TAAGAAATTTCTTTA-AGAAACATGAAATATATGCTTTTCTGTAACAC-A
* * * * ** * * * * ** *
350972 AAATAGCATCTTAATTGTGATTTTACACGTTATAATTTCATTTTGCATTGAAAAACATGATATAT
63 AAATAACATCTTAACTATGAATTTGTATGTTATAAGTTCA-TTTACAATGAAAAACGGGGTATAT
* * * * **
351037 TTGCATTTTCATGCACAAAAAAGAGTCTATCGTATGAT
127 ATCCATTTTCACGCACAAAAAAAAGTCTATAATATGAT
351075 TTT
1 TTT
351078 CCTCATTCAT
Statistics
Matches: 266, Mismatches: 51, Indels: 26
0.78 0.15 0.08
Matches are distributed among these distances:
159 1 0.00
160 29 0.11
161 62 0.23
162 1 0.00
163 14 0.05
164 151 0.57
165 8 0.03
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.41
Consensus pattern (164 bp):
TTTTCATCTTTATATAAGAAATTTCTTTAAGAAACATGAAATATATGCTTTTCTGTAACACAAAA
TAACATCTTAACTATGAATTTGTATGTTATAAGTTCATTTACAATGAAAAACGGGGTATATATCC
ATTTTCACGCACAAAAAAAAGTCTATAATATGAT
Found at i:351428 original size:21 final size:19
Alignment explanation
Indices: 351392--351432 Score: 55
Period size: 21 Copynumber: 2.1 Consensus size: 19
351382 ACATGTTGAG
351392 TAGTTAATTTAAGTTATTT
1 TAGTTAATTTAAGTTATTT
*
351411 TAGTTAAATTTTATGTTATTT
1 TAGTT-AA-TTTAAGTTATTT
351432 T
1 T
351433 GTTTTAAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 5 0.26
20 2 0.11
21 12 0.63
ACGTcount: A:0.29, C:0.00, G:0.10, T:0.61
Consensus pattern (19 bp):
TAGTTAATTTAAGTTATTT
Found at i:353878 original size:19 final size:19
Alignment explanation
Indices: 353850--353897 Score: 80
Period size: 19 Copynumber: 2.6 Consensus size: 19
353840 CGATAGCTAG
*
353850 AAAA-AATATTTTTTGAAT
1 AAAATAATATTTTTTAAAT
353868 AAAATAATATTTTTTAAAT
1 AAAATAATATTTTTTAAAT
353887 AAAATAATATT
1 AAAATAATATT
353898 AAAATATTAA
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
18 4 0.14
19 24 0.86
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (19 bp):
AAAATAATATTTTTTAAAT
Found at i:359684 original size:24 final size:24
Alignment explanation
Indices: 359657--359744 Score: 103
Period size: 24 Copynumber: 3.8 Consensus size: 24
359647 TGGTGCACTG
359657 AGTGAAGCTACTACTAGTGTGCCA
1 AGTGAAGCTACTACTAGTGTGCCA
* *
359681 AGTGAAGCTATTGCTAGTGTGCCA
1 AGTGAAGCTACTACTAGTGTGCCA
* *
359705 AGTGAAGCTATTGCTA--GTG-CA
1 AGTGAAGCTACTACTAGTGTGCCA
359726 AGTGAA-CTACCTACTAGTG
1 AGTGAAGCTA-CTACTAGTG
359745 CAAGTGAAGG
Statistics
Matches: 57, Mismatches: 4, Indels: 7
0.84 0.06 0.10
Matches are distributed among these distances:
20 3 0.05
21 12 0.21
22 3 0.05
23 1 0.02
24 38 0.67
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.27
Consensus pattern (24 bp):
AGTGAAGCTACTACTAGTGTGCCA
Found at i:359729 original size:21 final size:21
Alignment explanation
Indices: 359679--359763 Score: 91
Period size: 21 Copynumber: 3.9 Consensus size: 21
359669 ACTAGTGTGC
359679 CAAGTGAAGCTATTGCTAGTGTG
1 CAAGTGAAGCTATTGCTA--GTG
359702 CCAAGTGAAGCTATTGCTAGTG
1 -CAAGTGAAGCTATTGCTAGTG
* *
359724 CAAGTGAA-CTACCTACTAGTG
1 CAAGTGAAGCTA-TTGCTAGTG
* *
359745 CAAGTGAAGGTGTTGCTAG
1 CAAGTGAAGCTATTGCTAG
359764 GTCTATTGCA
Statistics
Matches: 53, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
20 3 0.06
21 28 0.53
22 4 0.08
24 18 0.34
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.27
Consensus pattern (21 bp):
CAAGTGAAGCTATTGCTAGTG
Found at i:360901 original size:31 final size:31
Alignment explanation
Indices: 360825--360901 Score: 75
Period size: 31 Copynumber: 2.5 Consensus size: 31
360815 GACATCTTGT
* * * *
360825 GGTGACACGTTGAGTGGTAGCAGATTCATGG
1 GGTGACACATTGAGTGCTAACAGACTCATGG
* *
360856 GATGACACACTGAGTGCTAACAGAACT-ATGG
1 GGTGACACATTGAGTGCTAACAG-ACTCATGG
*
360887 GGTGACACTTTGAGT
1 GGTGACACATTGAGT
360902 TGTTGCAGTA
Statistics
Matches: 36, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
31 34 0.94
32 2 0.06
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (31 bp):
GGTGACACATTGAGTGCTAACAGACTCATGG
Found at i:361010 original size:31 final size:31
Alignment explanation
Indices: 360964--361039 Score: 125
Period size: 31 Copynumber: 2.5 Consensus size: 31
360954 ACATCTTGTG
* *
360964 GTGACCCACTAAGTAGTAGCAGATTTATGCT
1 GTGACCCGCTGAGTAGTAGCAGATTTATGCT
*
360995 GTGACCCGCTGAGTAGTAGCATATTTATGCT
1 GTGACCCGCTGAGTAGTAGCAGATTTATGCT
361026 GTGACCCGCTGAGT
1 GTGACCCGCTGAGT
361040 GCTAATAGAA
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29
Consensus pattern (31 bp):
GTGACCCGCTGAGTAGTAGCAGATTTATGCT
Found at i:361316 original size:138 final size:137
Alignment explanation
Indices: 361003--361337 Score: 386
Period size: 138 Copynumber: 2.4 Consensus size: 137
360993 CTGTGACCCG
* * * **
361003 CTGAGTAGTAGCATATTTATGCTGTGACCCGCTGAGTGCTAATAGAACTATG-GGTGACATGCTG
1 CTGAGTAGTAGCAGATTTATGC-GTGACACGCTTAGTGCTAGCAGAACTATGAGGTGACATGCTG
* *
361067 AGTTGTTACAGCATTGTGGGGTGACACATCACGCCCCAACTGTTAGATATCGATGACATCTTGTG
65 AGTTGTTACAGCATTGTGGGGTGACACACCACGCCCCAACTGTTAGATATCGATGACATATTGTG
*
361132 GTGACATG
130 GTGACATA
* * * * * *
361140 CAGAGTAGTAGCAGATTTTTGGGGTGAAAC-ATTGAGTGCTAGCAGAACTATGAGGTGACATGTT
1 CTGAGTAGTAGCAGATTTAT-GCGTGACACGCTT-AGTGCTAGCAGAACTATGAGGTGACATGCT
** * * * * *
361204 GAGTTGTTGTAGTATTGTGGGGTGACACGCCATGCCCCAATTGTTAGATGTCGATGACATATTGT
64 GAGTTGTTACAGCATTGTGGGGTGACACACCACGCCCCAACTGTTAGATATCGATGACATATTGT
361269 GGTGACATA
129 GGTGACATA
* * * * *
361278 TTGAGTGGTAGCAGATTTATGACGTGACACGCTTAGTGCTGGCAGAGCCATGAGGTGACA
1 CTGAGTAGTAGCAGATTTATG-CGTGACACGCTTAGTGCTAGCAGAACTATGAGGTGACA
361338 CACCATGCCC
Statistics
Matches: 162, Mismatches: 31, Indels: 9
0.80 0.15 0.04
Matches are distributed among these distances:
136 1 0.01
137 39 0.24
138 120 0.74
139 2 0.01
ACGTcount: A:0.25, C:0.16, G:0.30, T:0.29
Consensus pattern (137 bp):
CTGAGTAGTAGCAGATTTATGCGTGACACGCTTAGTGCTAGCAGAACTATGAGGTGACATGCTGA
GTTGTTACAGCATTGTGGGGTGACACACCACGCCCCAACTGTTAGATATCGATGACATATTGTGG
TGACATA
Found at i:363142 original size:81 final size:81
Alignment explanation
Indices: 362994--363143 Score: 203
Period size: 81 Copynumber: 1.9 Consensus size: 81
362984 TTCTGTTGCC
* * * * *
362994 TCGACCACTGCATTGGCCTGAGAAAAATGGTCTCCTTCAGCCTCAACTGAGTGAAGCTGCCCCTC
1 TCGACAACTGCATTGGCCTGAGAAAAATGGTCTCCTTCAACATCAACTGAGTGAAGCTGCACATC
363059 CCCTCCCGCAAATTCA
66 CCCTCCCGCAAATTCA
* * * *
363075 TCGACAACTGCATTGGCCTTAGAAACATGGTCTCCTTCAACATCAACTGATTGAAG-GGTCACAT
1 TCGACAACTGCATTGGCCTGAGAAAAATGGTCTCCTTCAACATCAACTGAGTGAAGCTG-CACAT
363139 CCCCT
65 CCCCT
363144 ACCACAACAT
Statistics
Matches: 59, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
80 1 0.02
81 58 0.98
ACGTcount: A:0.25, C:0.33, G:0.18, T:0.24
Consensus pattern (81 bp):
TCGACAACTGCATTGGCCTGAGAAAAATGGTCTCCTTCAACATCAACTGAGTGAAGCTGCACATC
CCCTCCCGCAAATTCA
Found at i:365451 original size:31 final size:31
Alignment explanation
Indices: 365416--365584 Score: 184
Period size: 31 Copynumber: 5.5 Consensus size: 31
365406 AGAAAGAAAT
* * *
365416 AAATGTTGTTACACATTATGTATACCAAGTA
1 AAATGTTGTTACACATCATGCATATCAAGTA
*
365447 AAATGTTG-T-CACATGCCATGCATATCAAGTT
1 AAATGTTGTTACACAT--CATGCATATCAAGTA
365478 AAATGTTGTTACACGA-CATGCATATCAAGTA
1 AAATGTTGTTACAC-ATCATGCATATCAAGTA
* *
365509 AAATATTGTTACACGTCATGCATATCAAGTA
1 AAATGTTGTTACACATCATGCATATCAAGTA
* * * *
365540 AAATGTTGTTATAC-GCTAAGCATATCAAGTC
1 AAATGTTGTTACACATC-ATGCATATCAAGTA
365571 AAATGTTGTTACAC
1 AAATGTTGTTACAC
365585 GCCAATGCTG
Statistics
Matches: 118, Mismatches: 13, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
29 5 0.04
30 2 0.02
31 106 0.90
32 1 0.01
33 3 0.03
34 1 0.01
ACGTcount: A:0.37, C:0.16, G:0.15, T:0.33
Consensus pattern (31 bp):
AAATGTTGTTACACATCATGCATATCAAGTA
Found at i:365544 original size:93 final size:93
Alignment explanation
Indices: 365416--365585 Score: 241
Period size: 93 Copynumber: 1.8 Consensus size: 93
365406 AGAAAGAAAT
* * * * * *
365416 AAATGTTGTTACACATTATGTATACCAAGTAAAATGTTGTCACATGCCATGCATATCAAGTTAAA
1 AAATATTGTTACACATCATGCATACCAAGTAAAATGTTGTCACACGCCAAGCATATCAAGTCAAA
365481 TGTTGTTACACGACATGCATATCAAGTA
66 TGTTGTTACACGACATGCATATCAAGTA
* * * * *
365509 AAATATTGTTACACGTCATGCATATCAAGTAAAATGTTGTTATACGCTAAGCATATCAAGTCAAA
1 AAATATTGTTACACATCATGCATACCAAGTAAAATGTTGTCACACGCCAAGCATATCAAGTCAAA
365574 TGTTGTTACACG
66 TGTTGTTACACG
365586 CCAATGCTGA
Statistics
Matches: 66, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
93 66 1.00
ACGTcount: A:0.36, C:0.16, G:0.15, T:0.32
Consensus pattern (93 bp):
AAATATTGTTACACATCATGCATACCAAGTAAAATGTTGTCACACGCCAAGCATATCAAGTCAAA
TGTTGTTACACGACATGCATATCAAGTA
Found at i:366432 original size:23 final size:23
Alignment explanation
Indices: 366399--366447 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
366389 TAGCCGTGTT
*
366399 ACATATGCTCACCATGCCATCTC
1 ACATATGCTCACAATGCCATCTC
* * *
366422 ACATATTCTCACAATGGCATGTC
1 ACATATGCTCACAATGCCATCTC
366445 ACA
1 ACA
366448 AACTTTAAAC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.31, C:0.33, G:0.10, T:0.27
Consensus pattern (23 bp):
ACATATGCTCACAATGCCATCTC
Found at i:366559 original size:184 final size:184
Alignment explanation
Indices: 366226--366631 Score: 490
Period size: 184 Copynumber: 2.2 Consensus size: 184
366216 CATATTCAAG
* * * * * * * * *
366226 CCATGCCATGTCATACATTCCCACCATGGCCTGTCACAAACTTTAAACCTTGTCGTGTCACAGCC
1 CCATGCCATCTCACATATTCTCACCATGGCATGTCACAAACTTTAAACCTTATCGTATCAAAACC
*
366291 ATGTCACATATTCTACCGTGTCGTCTCACACATTATCACCCTGCCATGCCACAAATTCCCTCCAT
66 ATGTCACATATTCTACCGTGTCATCTCACACATTATCACCCTGCCATGCCACAAATTCCCTCCAT
* * * * * *
366356 GACGTGTAACAATCTTTGAACCCTGCCGTGACATAGCCGTGTTACATATGCTCA
131 GACATGTAACAAACTTTGAACCCTGCCGTGACACAACCGTGTCAAATATGCTCA
* *
366410 CCATGCCATCTCACATATTCTCACAATGGCATGTCACAAACTTTAAACCTTATCGTATCAAAACT
1 CCATGCCATCTCACATATTCTCACCATGGCATGTCACAAACTTTAAACCTTATCGTATCAAAACC
* * * * * * ** *
366475 GTGTCACATA-TCTCACCGTGTCATCTCACATATTATCACCTTTCCGTGTCACGGATTCCTTCCA
66 ATGTCACATATTCT-ACCGTGTCATCTCACACATTATCACCCTGCCATGCCACAAATTCCCTCCA
* * * * * *
366539 TGGCATGTCACAAACTTTGAACCCTGCTGTGTCACAACTGTGTCAAATATGCTTA
130 TGACATGTAACAAACTTTGAACCCTGCCGTGACACAACCGTGTCAAATATGCTCA
*
366594 CCATGCCATCTCACATATTCTCACCATGGCGTGTCACA
1 CCATGCCATCTCACATATTCTCACCATGGCATGTCACA
366632 TATTCATACC
Statistics
Matches: 186, Mismatches: 35, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
183 3 0.02
184 183 0.98
ACGTcount: A:0.26, C:0.32, G:0.13, T:0.29
Consensus pattern (184 bp):
CCATGCCATCTCACATATTCTCACCATGGCATGTCACAAACTTTAAACCTTATCGTATCAAAACC
ATGTCACATATTCTACCGTGTCATCTCACACATTATCACCCTGCCATGCCACAAATTCCCTCCAT
GACATGTAACAAACTTTGAACCCTGCCGTGACACAACCGTGTCAAATATGCTCA
Found at i:366611 original size:23 final size:23
Alignment explanation
Indices: 366585--366644 Score: 66
Period size: 23 Copynumber: 2.6 Consensus size: 23
366575 ACTGTGTCAA
*
366585 ATATGCTTACCATGCCATCTCAC
1 ATATTCTTACCATGCCATCTCAC
* * * *
366608 ATATTCTCACCATGGCGTGTCAC
1 ATATTCTTACCATGCCATCTCAC
*
366631 ATATTCATACCATG
1 ATATTCTTACCATG
366645 ACATGCCACT
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.27, C:0.30, G:0.12, T:0.32
Consensus pattern (23 bp):
ATATTCTTACCATGCCATCTCAC
Found at i:368481 original size:21 final size:21
Alignment explanation
Indices: 368432--368487 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 21
368422 TCCATCAGTA
*
368432 TAAATATGATTAAAATTTTTTT
1 TAAATAT-ATTAAAATCTTTTT
368454 TAGAATATATTAACAA-CTTTTT
1 TA-AATATATTAA-AATCTTTTT
*
368476 TAAATATTTTAA
1 TAAATATATTAA
368488 TCTTTCCTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
21 9 0.30
22 14 0.47
23 7 0.23
ACGTcount: A:0.43, C:0.04, G:0.04, T:0.50
Consensus pattern (21 bp):
TAAATATATTAAAATCTTTTT
Found at i:377219 original size:18 final size:18
Alignment explanation
Indices: 377196--377232 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
377186 GAATCAGTTT
377196 AGAAAGCAAAAAGAAGGA
1 AGAAAGCAAAAAGAAGGA
* *
377214 AGAAAGGAGAAAGAAGGA
1 AGAAAGCAAAAAGAAGGA
377232 A
1 A
377233 AGAGAAAGGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.65, C:0.03, G:0.32, T:0.00
Consensus pattern (18 bp):
AGAAAGCAAAAAGAAGGA
Found at i:377229 original size:14 final size:14
Alignment explanation
Indices: 377207--377259 Score: 56
Period size: 14 Copynumber: 3.8 Consensus size: 14
377197 GAAAGCAAAA
*
377207 AGAAGGAAGAAAGG
1 AGAAAGAAGAAAGG
377221 AGAAAGAAGGAAA-G
1 AGAAAGAA-GAAAGG
377235 AGAAAGGAA-AAAGG
1 AGAAA-GAAGAAAGG
*
377249 AGAAATAAGAA
1 AGAAAGAAGAA
377260 GACCTAGAAG
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
13 5 0.15
14 21 0.64
15 7 0.21
ACGTcount: A:0.64, C:0.00, G:0.34, T:0.02
Consensus pattern (14 bp):
AGAAAGAAGAAAGG
Found at i:377259 original size:21 final size:20
Alignment explanation
Indices: 377196--377259 Score: 51
Period size: 21 Copynumber: 3.2 Consensus size: 20
377186 GAATCAGTTT
* *
377196 AGAAAGCAAAAAGAAG--GA
1 AGAAAGGAAAAAGAAGAAAA
* *
377214 AGAAAGGAGAAAGAAGGAAAG
1 AGAAAGGAAAAAGAA-GAAAA
*
377235 AGAAAGGAAAAAGGAGAAATA
1 AGAAAGGAAAAAGAAGAAA-A
377256 AGAA
1 AGAA
377260 GACCTAGAAG
Statistics
Matches: 35, Mismatches: 7, Indels: 5
0.74 0.15 0.11
Matches are distributed among these distances:
18 13 0.37
19 1 0.03
20 4 0.11
21 17 0.49
ACGTcount: A:0.66, C:0.02, G:0.31, T:0.02
Consensus pattern (20 bp):
AGAAAGGAAAAAGAAGAAAA
Found at i:378686 original size:25 final size:25
Alignment explanation
Indices: 378651--378710 Score: 93
Period size: 25 Copynumber: 2.4 Consensus size: 25
378641 GGTTTGTGAT
*
378651 ATATACTTGGCAAGGCCACGAGTTG
1 ATATACGTGGCAAGGCCACGAGTTG
* *
378676 ATATATGTGGCTAGGCCACGAGTTG
1 ATATACGTGGCAAGGCCACGAGTTG
378701 ATATACGTGG
1 ATATACGTGG
378711 TTGCGACCAC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.27
Consensus pattern (25 bp):
ATATACGTGGCAAGGCCACGAGTTG
Found at i:388876 original size:29 final size:29
Alignment explanation
Indices: 388772--388948 Score: 187
Period size: 29 Copynumber: 6.1 Consensus size: 29
388762 ATTTTTTCTG
* *
388772 AAAACATGTTATCTTGTCTAAATTGAGAC
1 AAAACATGTTTTCTTGTCTAAATTAAGAC
* *** * *
388801 -AAACATGTTTTCTTGACTTGTTTACGGC
1 AAAACATGTTTTCTTGTCTAAATTAAGAC
*
388829 AAAACATATTTTTCTTGTCTTAAATTAAGAC
1 AAAACAT-GTTTTCTTGTC-TAAATTAAGAC
* *
388860 -AAACATGTTTTCATGTCAAAATTAAGAC
1 AAAACATGTTTTCTTGTCTAAATTAAGAC
* *
388888 TAAACATGTTTTCTTGTCTAAATTAGGAC
1 AAAACATGTTTTCTTGTCTAAATTAAGAC
* *
388917 AAAACATGTTTTATTGTCTAAATCAAGAC
1 AAAACATGTTTTCTTGTCTAAATTAAGAC
388946 AAA
1 AAA
388949 TATGTAAAAG
Statistics
Matches: 119, Mismatches: 25, Indels: 8
0.78 0.16 0.05
Matches are distributed among these distances:
28 30 0.25
29 68 0.57
30 15 0.13
31 6 0.05
ACGTcount: A:0.37, C:0.14, G:0.12, T:0.37
Consensus pattern (29 bp):
AAAACATGTTTTCTTGTCTAAATTAAGAC
Found at i:406864 original size:18 final size:18
Alignment explanation
Indices: 406841--406883 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 18
406831 AGGTAGAAAG
406841 AATATTTT-GAAATAAAAT
1 AATATTTTAG-AATAAAAT
406859 AATATTTTATGAATAAAAT
1 AATATTTTA-GAATAAAAT
406878 AATATT
1 AATATT
406884 AAAATATTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.35
19 14 0.61
20 1 0.04
ACGTcount: A:0.53, C:0.00, G:0.05, T:0.42
Consensus pattern (18 bp):
AATATTTTAGAATAAAAT
Found at i:413168 original size:23 final size:22
Alignment explanation
Indices: 413135--413179 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 22
413125 TTTTATAATT
413135 TTTTAAAATTTTATATTTAAAA
1 TTTTAAAATTTTATATTTAAAA
*
413157 TTTTAAATATTTTATTTTTAAAA
1 TTTTAAA-ATTTTATATTTAAAA
413180 AATTTTTACG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 7 0.33
23 14 0.67
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (22 bp):
TTTTAAAATTTTATATTTAAAA
Found at i:457794 original size:16 final size:16
Alignment explanation
Indices: 457763--457799 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
457753 CAATTCAATA
457763 AAAATGTCAAAAAATC
1 AAAATGTCAAAAAATC
457779 AAAAT-TCAAAAGAATC
1 AAAATGTCAAAA-AATC
457795 AAAAT
1 AAAAT
457800 CTAAATTTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 6 0.30
16 14 0.70
ACGTcount: A:0.65, C:0.11, G:0.05, T:0.19
Consensus pattern (16 bp):
AAAATGTCAAAAAATC
Found at i:460251 original size:35 final size:35
Alignment explanation
Indices: 460212--460283 Score: 90
Period size: 35 Copynumber: 2.1 Consensus size: 35
460202 AGTTAGTCTT
* * * *
460212 AGGTTTTGGTTGATCCTGTGAAAAACCATTGTCAA
1 AGGTTATGGCTGAGCCTGTGAAAAACCATTGTAAA
* *
460247 AGGTTATGGCTGAGCTTGTGAAAAACTATTGTAAA
1 AGGTTATGGCTGAGCCTGTGAAAAACCATTGTAAA
460282 AG
1 AG
460284 CTTGGTGGAA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.32, C:0.11, G:0.25, T:0.32
Consensus pattern (35 bp):
AGGTTATGGCTGAGCCTGTGAAAAACCATTGTAAA
Found at i:462323 original size:35 final size:35
Alignment explanation
Indices: 462277--462343 Score: 116
Period size: 35 Copynumber: 1.9 Consensus size: 35
462267 GGATTCTTTC
*
462277 TTTTTAATGAGATCAAGCAATAACCTTTACAATAG
1 TTTTTAATGAGAACAAGCAATAACCTTTACAATAG
*
462312 TTTTTAATGAGAACAAGCGATAACCTTTACAA
1 TTTTTAATGAGAACAAGCAATAACCTTTACAA
462344 AATCCAGAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.33
Consensus pattern (35 bp):
TTTTTAATGAGAACAAGCAATAACCTTTACAATAG
Found at i:468697 original size:341 final size:342
Alignment explanation
Indices: 468066--468752 Score: 1285
Period size: 341 Copynumber: 2.0 Consensus size: 342
468056 ATGAATCACG
*
468066 TCAATTAGACATTTATAGTGAGAGGTCCATACTTGCATGATTTATTGCCATGGAATCAACTTGCC
1 TCAATTAGACATTTATAGTGAGAAGTCCATACTTGCATGATTTATTGCCATGGAATCAACTTGCC
*
468131 TTGCTTTAAGATCAATTGAAGCTTTGCTTTTTCTAGATCCCTTGACATTTTGGCACTTAACTTCA
66 TTGCTTTAAGATCAATTGAAGCTTTGCTTTTTCAAGATCCCTTGACATTTTGGCACTTAACTTCA
468196 GCTACTTCTTCCTTGGTTATTCTTTGTGGTGAAGTGTTGAGTTGAGAATGAACTTTTTTGCTTGA
131 GCTACTTCTTCCTTGGTTATTCTTTGTGGTGAAGTGTTGAGTTGAGAATGAACTTTTTTGCTTGA
468261 GATAACCTTTGTGTTCTTTGAATGCTTTGAGATGTACTTCACAATTTTAGAACCTATCTTGCAAC
196 GATAACCTTTGTGTTCTTTGAATGCTTTGAGATGTACTTCACAATTTTAGAACCTATCTTGCAAC
468326 TTCAACATCTCAAAGGTAAATGTTATGGGGATCATAAATAGAAGTCTTTCAAGCAAATTTAGCAT
261 TTCAACATCTCAAAGGTAAATGTTATGGGGATCATAAATAGAAGTCTTTCAAGCAAATTTAGCAT
468391 GCGTACAATTAAGTCAT
326 GCGTACAATTAAGTCAT
468408 TCAA-TAGACATTTATAGTGAGAAGTCCATACTTGCATGATTTATTGCCATGGAATCAACTTGCC
1 TCAATTAGACATTTATAGTGAGAAGTCCATACTTGCATGATTTATTGCCATGGAATCAACTTGCC
468472 TTGCTTTAAGATCAAATTGAAGCTTTGC-TTTTCAAGATCCCTTGACATTTTGGCCACTTAACTT
66 TTGCTTTAAGATC-AATTGAAGCTTTGCTTTTTCAAGATCCCTTGACATTTTGG-CACTTAACTT
468536 CAGCTACTTCTTCCTTGGTTATTC-TTGTGGTGAAGTGTTGAGTTGAGAATGAACTTTTTTGCTT
129 CAGCTACTTCTTCCTTGGTTATTCTTTGTGGTGAAGTGTTGAGTTGAGAATGAACTTTTTTGCTT
468600 GAGATAACC-TT-TGTTCTTTTGAATGCTTTGAGATGTACTTCACAATTTTAGAACCTATCTTGC
194 GAGATAACCTTTGTGTTC-TTTGAATGCTTTGAGATGTACTTCACAATTTTAGAACCTATCTTGC
468663 AACTTCAACATCTCAAAGGTAAATGTTAATGGGGATCATAAATAGAAGTCTTTCAAGCAAATTTA
258 AACTTCAACATCTCAAAGGTAAATGTT-ATGGGGATCATAAATAGAAGTCTTTCAAGCAAATTTA
468728 GCATGCGTACAATTAAGTCAT
322 GCATGCGTACAATTAAGTCAT
468749 TCAA
1 TCAA
468753 GCTTGCAGAC
Statistics
Matches: 339, Mismatches: 2, Indels: 9
0.97 0.01 0.03
Matches are distributed among these distances:
339 5 0.01
340 75 0.22
341 207 0.61
342 52 0.15
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.38
Consensus pattern (342 bp):
TCAATTAGACATTTATAGTGAGAAGTCCATACTTGCATGATTTATTGCCATGGAATCAACTTGCC
TTGCTTTAAGATCAATTGAAGCTTTGCTTTTTCAAGATCCCTTGACATTTTGGCACTTAACTTCA
GCTACTTCTTCCTTGGTTATTCTTTGTGGTGAAGTGTTGAGTTGAGAATGAACTTTTTTGCTTGA
GATAACCTTTGTGTTCTTTGAATGCTTTGAGATGTACTTCACAATTTTAGAACCTATCTTGCAAC
TTCAACATCTCAAAGGTAAATGTTATGGGGATCATAAATAGAAGTCTTTCAAGCAAATTTAGCAT
GCGTACAATTAAGTCAT
Found at i:473319 original size:27 final size:28
Alignment explanation
Indices: 473289--473361 Score: 85
Period size: 27 Copynumber: 2.6 Consensus size: 28
473279 TTTTTCAGGC
*
473289 TCACCAGAAACCCATGGTGTTTC-GGGT
1 TCACCAAAAACCCATGGTGTTTCTGGGT
* * * *
473316 TCACCAAAAAGCAATGCTTTTTCTGGGT
1 TCACCAAAAACCCATGGTGTTTCTGGGT
*
473344 TCACCACAAACCCATGGT
1 TCACCAAAAACCCATGGT
473362 TTCAATGGGA
Statistics
Matches: 36, Mismatches: 9, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
27 18 0.50
28 18 0.50
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.26
Consensus pattern (28 bp):
TCACCAAAAACCCATGGTGTTTCTGGGT
Found at i:482433 original size:80 final size:80
Alignment explanation
Indices: 482326--482530 Score: 268
Period size: 80 Copynumber: 2.6 Consensus size: 80
482316 AGATTGCAAC
* *
482326 ATGCATGCCATGAGATGTATGTGTTGAGATAGTCATATACACTATAGGCTGAGCATGTGA-GTTA
1 ATGCATGCCATGAGATGTATGTGTTGAGATAGTCATATACACTATAGGCTAAGCATGT-ATGTGA
*
482390 CTTACGAGGTTATGAA
65 CTTACAAGGTTATGAA
* * * * *
482406 ATGCATGCGATGAGATGTATGTTTTGAGATAGTCATATACACTATGGGCTAAGTATGTATGTGAT
1 ATGCATGCCATGAGATGTATGTGTTGAGATAGTCATATACACTATAGGCTAAGCATGTATGTGAC
*
482471 TTATAAGGTTATGAA
66 TTACAAGGTTATGAA
* * * * *
482486 ATGTATGCTACGAGATGGATGTGTTGAGATAGTCATATACGCTAT
1 ATGCATGCCATGAGATGTATGTGTTGAGATAGTCATATACACTAT
482531 GAGCTAAATG
Statistics
Matches: 109, Mismatches: 15, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
79 1 0.01
80 108 0.99
ACGTcount: A:0.30, C:0.10, G:0.26, T:0.34
Consensus pattern (80 bp):
ATGCATGCCATGAGATGTATGTGTTGAGATAGTCATATACACTATAGGCTAAGCATGTATGTGAC
TTACAAGGTTATGAA
Found at i:495353 original size:19 final size:19
Alignment explanation
Indices: 495310--495355 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
495300 AGAATTTTGG
** *
495310 AATAAAATAATATTTTATT
1 AATAAAATAATATTAAAAT
495329 AATAAAATAATATTAAAAT
1 AATAAAATAATATTAAAAT
*
495348 ATTAAAAT
1 AATAAAAT
495356 TTTATTTGTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (19 bp):
AATAAAATAATATTAAAAT
Found at i:497553 original size:25 final size:24
Alignment explanation
Indices: 497519--497572 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 24
497509 GGTCTCTGAT
* *
497519 ATATATGTGGCAAAGCCACAGGTTG
1 ATATAGGTGGCAAAGCCACAAG-TG
* *
497544 ATATAGGTGGCTAGGCCACAAGTG
1 ATATAGGTGGCAAAGCCACAAGTG
497568 ATATA
1 ATATA
497573 CGCGGCTGCG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
24 7 0.28
25 18 0.72
ACGTcount: A:0.33, C:0.15, G:0.28, T:0.24
Consensus pattern (24 bp):
ATATAGGTGGCAAAGCCACAAGTG
Found at i:497579 original size:24 final size:25
Alignment explanation
Indices: 497533--497579 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 25
497523 ATGTGGCAAA
* * *
497533 GCCACAGGTTGATATAGGTGGCTAG
1 GCCACAAGTTGATATACGCGGCTAG
497558 GCCACAAG-TGATATACGCGGCT
1 GCCACAAGTTGATATACGCGGCT
497580 GCGACCGCCT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 12 0.63
25 7 0.37
ACGTcount: A:0.26, C:0.21, G:0.32, T:0.21
Consensus pattern (25 bp):
GCCACAAGTTGATATACGCGGCTAG
Found at i:502469 original size:80 final size:80
Alignment explanation
Indices: 502335--502620 Score: 349
Period size: 80 Copynumber: 3.6 Consensus size: 80
502325 TGCAGCATGC
* * ** * * * *
502335 ATGCCATAAGATGTATGTGTTGGGATAATCATGTACACTATGTGCT-AACAATGTGAGTTATTTA
1 ATGCCATGAGATGTATGTGCTAAGATAGTCATATACACTATGGGCTGAGC-ATGTGAGTTATTTA
*
502399 TGAGGTTATGAAATGC
65 TGAGGTTATGAAATGT
* * *
502415 ATGCCATGAGATGTTTATGCTAAGCTAGTCATATACACTATGGGCTGAGCATGTGAGTTATTTAT
1 ATGCCATGAGATGTATGTGCTAAGATAGTCATATACACTATGGGCTGAGCATGTGAGTTATTTAT
502480 GAGGTTATGAAATGT
66 GAGGTTATGAAATGT
* * * * * * * *
502495 ATGCCATGAGGTGTATGTGCTGAGGTAGTCATCTACACTATGGACTGAGTATGTAAGTGATTTAT
1 ATGCCATGAGATGTATGTGCTAAGATAGTCATATACACTATGGGCTGAGCATGTGAGTTATTTAT
502560 GAGGTTATGAAATGT
66 GAGGTTATGAAATGT
* * *
502575 ATGCCATGATATGTATGTGTTAAGATTGTCATATACACTATGGGCT
1 ATGCCATGAGATGTATGTGCTAAGATAGTCATATACACTATGGGCT
502621 AAGTATGATG
Statistics
Matches: 175, Mismatches: 30, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
80 173 0.99
81 2 0.01
ACGTcount: A:0.29, C:0.11, G:0.25, T:0.35
Consensus pattern (80 bp):
ATGCCATGAGATGTATGTGCTAAGATAGTCATATACACTATGGGCTGAGCATGTGAGTTATTTAT
GAGGTTATGAAATGT
Found at i:513726 original size:24 final size:25
Alignment explanation
Indices: 513682--513731 Score: 59
Period size: 24 Copynumber: 2.0 Consensus size: 25
513672 ATGTTCCTGG
513682 TCAATGTATCATTGAGACTAG-ACA
1 TCAATGTATCATTGAGACTAGTACA
* *
513706 TCAATG-ATCTTTAGAGGCTAGTACA
1 TCAATGTATCATT-GAGACTAGTACA
513731 T
1 T
513732 TCTATGTTCC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
23 5 0.23
24 13 0.59
25 4 0.18
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.32
Consensus pattern (25 bp):
TCAATGTATCATTGAGACTAGTACA
Found at i:522247 original size:77 final size:78
Alignment explanation
Indices: 522116--522281 Score: 210
Period size: 77 Copynumber: 2.1 Consensus size: 78
522106 AATACCATCT
* * ** *
522116 ATTTTAATTTTAGGTGATTCATAAAAAAAATAGGAAATTTGTTCCTACTTTAAAATTAGTTTCTC
1 ATTTTAATTTTAGGTGATTCAT-AAAAAAATAAGAAATTTGTTCATACTTTAAAAGAAATTTCTC
522181 AAATTAAGGATAGA
65 AAATTAAGGATAGA
* * * *
522195 ATTTAAATTTTGGGTGATTCAT-AAAAAATAAGAAA-TTGTTTCATGCTTTAAAAGAAATTTCTG
1 ATTTTAATTTTAGGTGATTCATAAAAAAATAAGAAATTTG-TTCATACTTTAAAAGAAATTTCTC
*
522258 AAATTAAGGATAGT
65 AAATTAAGGATAGA
522272 ATTTTAATTT
1 ATTTTAATTT
522282 GAAAAATTCA
Statistics
Matches: 75, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
76 3 0.04
77 52 0.69
79 20 0.27
ACGTcount: A:0.40, C:0.06, G:0.13, T:0.40
Consensus pattern (78 bp):
ATTTTAATTTTAGGTGATTCATAAAAAAATAAGAAATTTGTTCATACTTTAAAAGAAATTTCTCA
AATTAAGGATAGA
Found at i:536202 original size:58 final size:57
Alignment explanation
Indices: 536123--536238 Score: 160
Period size: 58 Copynumber: 2.0 Consensus size: 57
536113 ATCATCTCAT
* * *
536123 CTTTGCATGCATAGCATTTATTAAATCACCTAAAATAAATCTATCACATGCATACTA
1 CTTTGCATGCATAGCATTTATTAAATCACATAAAATAAATATATCACATGCAAACTA
** **
536180 CTTTGCATTGCATAGTGTTTATTAAATTGCATAAAATAAATATATCACATGCAAACTA
1 CTTTGCA-TGCATAGCATTTATTAAATCACATAAAATAAATATATCACATGCAAACTA
536238 C
1 C
536239 ATTGGATGAT
Statistics
Matches: 51, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
57 7 0.14
58 44 0.86
ACGTcount: A:0.39, C:0.18, G:0.09, T:0.34
Consensus pattern (57 bp):
CTTTGCATGCATAGCATTTATTAAATCACATAAAATAAATATATCACATGCAAACTA
Found at i:546094 original size:171 final size:169
Alignment explanation
Indices: 545498--553796 Score: 5753
Period size: 171 Copynumber: 48.7 Consensus size: 169
545488 GTCAATTCGA
** ** * * ** *
545498 GACTATAAATTAACTTTTCTTATCAATGGATGGCTTTTTCATCACGTTTCTTGAGACAGACATTC
1 GACTATAAATGGACTTTTCTTGCCAATGGATGGCTTTTGCTTCACGTTTCTCAAGGCA-ACATTC
* * * ** *
545563 AGTTATAATTTATTTTAA-ACAAAAATGTAAAAACACCCAACTTAAAATCAATTATGAGACTATA
65 AATTATAATATATTTTAACA-AAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATA
** * *
545627 AAATAATTTAAATG-GAGTAATAAAGCTTTTGAAGGCTTGAGC
129 AAACCATTTAAA-GATAGTAAT-AAGCTTTTGAAGGCTTGAGT
* * * * * * * * * *
545669 CACTAGAAATGAACTTTTATTGTCAATAGATGGCTTGTCCTTCATGTTTCTCGAGGCAGACATTC
1 GACTATAAATGGACTTTTCTTGCCAATGGATGGCTTTTGCTTCACGTTTCTCAAGGCA-ACATTC
* * * * * *
545734 AGTTATAATATATTTTAACTAAAAATATAAAAAAATACAACTTAAAATCAATAATGAGAATAT-A
65 AATTATAATATATTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAA
* ** *
545798 AACCATTTACAGCGAATAATAAAGCTTTTGAAGGCTTGAGT
130 AACCATTTAAAGATAGTAAT-AAGCTTTTGAAGGCTTGAGT
* * * * * *
545839 AACTAGAAATGGACTTTCCTTGTCAATGGATGGCTTTTGCTTCATGTTT-TCCAAGGCAAACAAT
1 GACTATAAATGGACTTTTCTTGCCAATGGATGGCTTTTGCTTCACGTTTCT-CAAGGC-AACATT
* * * * *
545903 CAAATATAATCTATTTTAACAAAAAATGTAAAACAATTCAACTTAAAATCAATTATGTGAATATA
64 CAATTATAATATATTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATA
* * * **
545968 AATCCATTTCAAGATAGTAATAAGTTTTTTTAGCGCTTGAGT
129 AAACCATTTAAAGATAGTAATAAGCTTTTGAAG-GCTTGAGT
** * *
546010 GACTATAAATTAACTTTTC-TCCCAAATGGATGGCTTTTGCTTCACATTTCTCAAGGCCAACATT
1 GACTATAAATGGACTTTTCTTGCC-AATGGATGGCTTTTGCTTCACGTTTCTCAAGG-CAACATT
* * * * * * * *
546074 TAGTTATAATATAGTTTAACAAAAAATGTAACAAAA-TGAACTTAAAATCAATAATGAGAATATG
64 CAATTATAATATATTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATA
* ** *
546138 AAACTATTTAAAGCGAATAATAAGGCTTTTGAAGGCTTGAGT
129 AAACCATTTAAAGATAGTAATAA-GCTTTTGAAGGCTTGAGT
* * * ** * * * * * *
546180 GACTAGAACTAGACTTTTCTTATCTATAGATGACTTTTGCTTCACGTTTCTCAAGGTAAACAGTG
1 GACTATAAATGGACTTTTCTTGCCAATGGATGGCTTTTGCTTCACGTTTCTCAAGG-CAACATTC
* * * ** * * *
546245 AAATATAATCTTTTTTAATGAAAAATATAAAAAAA-TAAACTTAAAATTAATTATGCA-ATTATA
65 AATTATAATATATTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATCAATTATG-AGATTATA
* * **
546308 AAACCATTTAAAGCTAGTAATAAGTTTTTTTAGGACTT-AGT
129 AAACCATTTAAAGATAGTAATAAGCTTTTGAAGG-CTTGAGT
* ** ** * * * * * **
546349 GACTATTAATCAACTTTTCTCACAAATGGATGGCTTTTGTTTTATGTTTC-CTGAGATAGACATT
1 GACTATAAATGGACTTTTCTTGCCAATGGATGGCTTTTGCTTCACGTTTCTC-AAGGCA-ACATT
* * *
546413 CGACTATAATATATTTTAACAAAAAATGTAAAAAAATTTAACTTAAAATCAATTATGAGATTATA
64 CAATTATAATATATTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATA
* ** * * *
546478 AAACCATTAAAAGCGAGTAATAAGGCTATCGAAGGCTTGAGA
129 AAACCATTTAAAGATAGTAATAA-GCTTTTGAAGGCTTGAGT
*** * * * **
546520 GACTATAAATGGACTTTTCTTATGAATGGATGGCTTTTACATCACGTTTCCCAAGGCAGGTATTC
1 GACTATAAATGGACTTTTCTTGCCAATGGATGGCTTTTGCTTCACGTTTCTCAAGGCA-ACATTC
* * * * * *
546585 CATTTTAAT-TAATTTTAA-ACAACAATGTAAAAAAACTCTACTTAAAATCAATTATGAGACTAT
65 AATTATAATAT-ATTTTAACA-AAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTAT
* * ** * * *
546648 AAAATCTTTTAAAGCGAATAATAAGGTTTTGGAAGACTTGAGT
128 AAAACCATTTAAAGATAGTAATAAGCTTTT-GAAGGCTTGAGT
* * * * * * *
546691 GACTAGAAATGGACTTTTTTTACCAATGGATGGCTTTTGCTTTAGGTTTC-CTGACGCAAACATT
1 GACTATAAATGGACTTTTCTTGCCAATGGATGGCTTTTGCTTCACGTTTCTC-AAGGC-AACATT
* * * * * *
546755 AAATTATAATATATTTTAACCAAAAAA-ATAAAAAAATTTAACTTAAAACCAATAATTAGATTAT
64 CAATTATAATATATTTTAA-CAAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTAT
* * * *
546819 AAAACTATTTAAAG-TGAGTAATGAGGCTTTCG-AGAGCTTAAGT
128 AAAACCATTTAAAGAT-AGTAAT-AAGCTTTTGAAG-GCTTGAGT
* * * * * * *
546862 GACTATAAATAGACTTTTCTTCCCAACGGATGGCTTTTGCTTCACATTTCCCAAGACAAGTAGTT
1 GACTATAAATGGACTTTTCTTGCCAATGGATGGCTTTTGCTTCACGTTTCTCAAGGCAA-CA-TT
* * * *
546927 -AGA-TATAATCTATTTTAACCAAAAATGAAAAAAAAATTCAACTTAAAATCAATTATGCGATTA
64 CA-ATTATAATATATTTTAACAAAAAATG-TAAAAAAATTCAACTTAAAATCAATTATGAGATTA
* * * * * *
546990 CAAAATCATTTAAAGCA-AGTAATAAGTTTTATTAAGGCTTAAGC
127 TAAAACCATTTAAAG-ATAGTAATAAGCTTT-TGAAGGCTTGAGT
* * * *
547034 GACTATAAATTGACTTTT-TTCCCAAATAGATGGCTTTTGCTTCACGTTTTTCAAGGCAGACATT
1 GACTATAAATGGACTTTTCTTGCC-AATGGATGGCTTTTGCTTCACGTTTCTCAAGGCA-ACATT
* * * * * *
547098 CAGTTATAATATATTTTTATCAAAAAATGTAAAACAATTTAACTTAAAATCAATAATTAGATTAT
64 CAATTATAATATA-TTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTAT
* ** * * *
547163 AAAACCATGTAAAGCGAGTAATAAGGCTTTTAAAGGATTTAGT
128 AAAACCATTTAAAGATAGTAATAA-GCTTTTGAAGGCTTGAGT
* * **
547206 GACTATAATTGGACTTTTCTTGTCAATGGATGGCTTTTTTTTCACGTTT-TCCAA-GCTAA-ATA
1 GACTATAAATGGACTTTTCTTGCCAATGGATGGCTTTTGCTTCACGTTTCT-CAAGGC-AACAT-
* * * * * * * *
547268 GTCAAATATAATCTGTTATAACCAAAAATGTAAAAAAAATTGAAGTTAAAATCAATTATGCGATT
63 -TCAATTATAATATATTTTAACAAAAAATGT-AAAAAAATTCAACTTAAAATCAATTATGAGATT
* * *
547333 ATAAAACTATTTAAAGATAGTAATAAGTTTTTTGAGGGCTTGAGT
126 ATAAAACCATTTAAAGATAGTAATAAG-CTTTTGAAGGCTTGAGT
* * * *** *
547378 GACTATAAATCGACTTTT-TT-CATAAATAGATGGCTTTTGCTTTGTGTTTCAT-GAGGCAGACA
1 GACTATAAATGGACTTTTCTTGC--CAATGGATGGCTTTTGCTTCACGTTTC-TCAAGGCA-ACA
* * * * * * * *
547440 TTCAGTTATAACATATTTTAACCAAAAATATAAAAATATTCAATTTAAAATCAATAATTAGATTA
62 TTCAATTATAATATATTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTA
* * *
547505 TAAAACCATTTAAAGCTAGTAATAAGGCTTTTGAAGGCGT-AGGA
127 TAAAACCATTTAAAGATAGTAATAA-GCTTTTGAAGGCTTGA-GT
* * * * ** ** * *
547549 GACTATAAATAGA-TATTTCTTGCCAACGGATTGCTTTTACTTCATATTTC-CTAAGTTAATAGT
1 GACTATAAATGGACT-TTTCTTGCCAATGGATGGCTTTTGCTTCACGTTTCTC-AAGGCAACATT
* * * * * *
547612 CAAATATAATATGTTTTAATC-AAAAATATAAAAAAATTTAATTTAAAATCAATTATGCGATTAT
64 CAATTATAATATATTTTAA-CAAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTAT
* * * * *
547676 AAAACTATTTAAAGCTAGTTATAAG--TTTGCCTAGGGCTTGAAT
128 AAAACCATTTAAAGATAGTAATAAGCTTTTG---AAGGCTTGAGT
* ** * * * * * * *
547719 GACTATAATTCAACTTTTCTTGCAAATAGATAGCTTTTGCTTTACGTTTTTCAAGGTAGATATTC
1 GACTATAAATGGACTTTTCTTGCCAATGGATGGCTTTTGCTTCACGTTTCTCAAGGCA-ACATTC
* ** * * * * * *
547784 AATTATAATATATTTAAATTAAAAATATAAAACATTTCACCTTAAAATCAATAATTAGATTATAA
65 AATTATAATATATTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAA
** *
547849 AACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCTTGAGT
130 AACCATTTAAAGATAGTAATAA-GCTTTTGAAGGCTTGAGT
* * * * * ** *
547890 GACTATAAATAGACTTTTCTTGTCAACGGATGGCTTTTGCTTCATGTTTCCCAAAGTAAACAGTC
1 GACTATAAATGGACTTTTCTTGCCAATGGATGGCTTTTGCTTCACGTTTCTC-AAGGCAACATTC
* * * * ** *
547955 AAATATAATCTGTTTTAACAAAAAATGTAAAAAAATTAAACTGGAAATCAATTATGTGATTATAA
65 AATTATAATATATTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAA
* * *
548020 AACCACTTAAAGATAGTAATAAGTTTTTTGAAGGCTTTAGT
130 AACCATTTAAAGATAGTAATAAG-CTTTTGAAGGCTTGAGT
* * * * *
548061 GACTATAAATTGG-CTTTTGTAT--AAATGGATAGG-TTTTGCTTCATGTTTC-CTGAGGCAGAG
1 GACTATAAA-TGGACTTTTCT-TGCCAATGGAT-GGCTTTTGCTTCACGTTTCTC-AAGGCA-AC
* * *
548121 ATTCAGTTATAATATATTTTAACCAAAAATATAAAAAAACTTCAACTTAAAATCAATTATGAGAT
61 ATTCAATTATAATATATTTTAACAAAAAATGTAAAAAAA-TTCAACTTAAAATCAATTATGAGAT
* * * * *
548186 TATAAAA-CTTTTGAAAGCA-AGTAATAAGGCTATCGAAGGCTTGGGA
125 TATAAAACCATTT-AAAG-ATAGTAATAA-GCTTTTGAAGGCTTGAGT
* * * *** * * * * * *
548232 AACTATAAATGAATTTTTCTTATAAATGGATAGCTTTTGCTTCATGTTTCTTAAAGCAAAAATTT
1 GACTATAAATGGACTTTTCTTGCCAATGGATGGCTTTTGCTTCACGTTTCTCAAGGC-AACATTC
* * * * *
548297 AGTTATAATTTATTTTTTA-AAAAAATGTAAAAAAATTCAACTTAAAAGCAACTATGAGATTATA
65 AATTATAATATA-TTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATA
* ** * * *
548361 AAATCATTTAAAGCGAGTAATAAGGCTATCGAAGGCTTGAGA
129 AAACCATTTAAAGATAGTAATAA-GCTTTTGAAGGCTTGAGT
* * *
548403 GACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTC-CTGAGGTAGACATT
1 GACTATAAATGGACTTTTCTTGCCAATGGATGGCTTTTGCTTCACGTTTCTC-AAGGCA-ACATT
* * *
548467 CACTTATAATATATTTTCAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATAAGATTAT
64 CAATTATAATATATTTT-AACAAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTAT
* * *
548532 AAAACCATTTAAACCGA-A-TAATAAGGCTATCGAAGGCTTGAGA
128 AAAACCATTTAAA--GATAGTAATAA-GCTTTTGAAGGCTTGAGT
* * * * *
548575 GACTATAAATCGACTTTTTTTGTCAATGGATGGCTTTTGCTTCACGTTTCT-AGAGGTAGACTTT
1 GACTATAAATGGACTTTTCTTGCCAATGGATGGCTTTTGCTTCACGTTTCTCA-AGGCA-ACATT
*** * * * * * *
548639 TGGTTATAATTTGTTTT-A-AAAAAATATAAAAAAGCTT-AACTTAAAATAAATTATGAGACTAT
64 CAATTATAATATATTTTAACAAAAAATGTAAAAAA-ATTCAACTTAAAATCAATTATGAGATTAT
* * * * * *
548701 AAAACTATTTAAAGAGAATAATAAGGCTTTTAAAAGCTTGAGC
128 AAAACCATTTAAAGATAGTAATAA-GCTTTTGAAGGCTTGAGT
* * * ** * * **
548744 AACTAAAAATGGACTTTTCTTGTCAATTAATAGCTTTTGCTTCACGTTTCCCAAGAAAAACATTC
1 GACTATAAATGGACTTTTCTTGCCAATGGATGGCTTTTGCTTCACGTTTCTCAAG-GCAACATTC
* * *
548809 AGTTATAATATATTTTAAGC-AAAAATGTAGAAAAATTTAACTTAAAATCAATTATGA-AGTTAT
65 AATTATAATATATTTTAA-CAAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGA-TTAT
* * * * ** *
548872 CAAACCACTTAAAGCA-AGTAATAAGGCTTTCGAAAGAATGTGT
128 AAAACCATTTAAAG-ATAGTAATAA-GCTTTTGAAGGCTTGAGT
* * ** * * *
548915 GACTATAAATAGG-CATTTCTTGTCAATAAATGGCTTTTTCTTCACTTTTCTCGAGGCAAACATT
1 GACTATAAAT-GGACTTTTCTTGCCAATGGATGGCTTTTGCTTCACGTTTCTCAAGGC-AACATT
* * * * * * * *
548979 CAAATATGATCTATTTTGATC-AAAAATATAAAAAAAATCAACTTAAAATCAGTAATGAGATTAT
64 CAATTATAATATATTTT-AACAAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTAT
* ** * *
549043 AAAACCATTTCAAGCGAGTAATAAGGC-TTT---CG-TTGAAT
128 AAAACCATTTAAAGATAGTAATAA-GCTTTTGAAGGCTTGAGT
** * * * * * *
549081 GACTATAAATGGACTTTTCTTGTTAATGGATGGTTTTTGCTTCATGTCTCTCGAGGTAGACATTT
1 GACTATAAATGGACTTTTCTTGCCAATGGATGGCTTTTGCTTCACGTTTCTCAAGGCA-ACATTC
* * * *** * *
549146 AGTTATAATTTAATTTAACCTCAAATGTGAAAAGATTCAACTTAAAATCAATTATGAG-TCTATA
65 AATTATAATATATTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGAT-TATA
* * * *
549210 AAACCATTTAAAG-TGAGTAAGTAGGCTTTTAAAGTCTTGAGC
129 AAACCATTTAAAGAT-AGTAA-TAAGCTTTTGAAGGCTTGAGT
* * * * * * * *
549252 GACTATAAATAGACTTTTCTTGCCAATAGATGGCTTTCGCTTCACGTTTCCCTATGTAGACAATC
1 GACTATAAATGGACTTTTCTTGCCAATGGATGGCTTTTGCTTCACGTTTCTCAAGGCA-ACATTC
* ** * * * *
549317 AATTATAATATATTTTTATC-AAAAATACAAAAATATTTAACTTAAAATAAATTATAAGATTATA
65 AATTATAATATA-TTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATA
* * * * * *
549381 AAACTATTTAGATAGAGTAATAAGGCTTTCGAAGGCTTTAGT
129 AAACCATTTAAAGATAGTAATAA-GCTTTTGAAGGCTTGAGT
* * * ** * * *
549423 GACTATAAATAGACTTTTCTTGCAAATGGATCGCTTTTGCTTCATATTT-TCGAGGTAAATATTC
1 GACTATAAATGGACTTTTCTTGCCAATGGATGGCTTTTGCTTCACGTTTCTCAAGG-CAACATTC
* * * * *
549487 AGTTATAATATGTTTTAACTAAAAATGTAAAAAAATTCAATTTAAAATCAATCATGAGATTATAA
65 AATTATAATATATTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAA
** * * * *
549552 AACC-TTTCAAAGGGAGCAATAAATCTTTTAAAGGCTTGAAT
130 AACCATTT-AAAGATAGTAAT-AAGCTTTTGAAGGCTTGAGT
* * * ** * *
549593 GACTATAAATAGACTTTTCTTGTCAATGGATGCCTTTTGCTTCACGTCCCCCAAAGCAAACATTC
1 GACTATAAATGGACTTTTCTTGCCAATGGATGGCTTTTGCTTCACGTTTCTCAAGGC-AACATTC
* * * *
549658 AGTTATAAT-TAATTTTAATAAAAAATGTAAAAAATTTTAACTTAAAATCAATTATGAGATTATA
65 AATTATAATAT-ATTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATA
* * * *
549722 AAACCATTTAAAGAGAGCAATAAAGC-TTTCAATTGCTTGAGT
129 AAACCATTTAAAGATAGTAAT-AAGCTTTTGAA-GGCTTGAGT
* ** *
549764 GACTATAAATGGACTTTTCTTACCAATGGATGG-TTTTCGCTTCATATTTCCTGAA-GCAGACAT
1 GACTATAAATGGACTTTTCTTGCCAATGGATGGCTTTT-GCTTCACGTTT-CTCAAGGCA-ACAT
** * * * ** * *
549827 TCAATTATAATATATTTTAATTAAAAATATAAACAAATTTAGTTTAGAATCAATTATGAGGTTAT
63 TCAATTATAATATATTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTAT
* * * **** *
549892 CAAACCACTTAAAG-TAAGTAATAAGGCTTTCGAAATAATGGGT
128 AAAACCATTTAAAGAT-AGTAATAA-GCTTTTGAAGGCTTGAGT
* * *** * * ** ** *
549935 GACTATAAATAGATTTTTCTTGTGGATGAACGGCTTTTTTTTTCATATTT-TCCAAGGTAGACAT
1 GACTATAAATGGACTTTTCTTGCCAATGGATGGC-TTTTGCTTCACGTTTCT-CAAGGCA-ACAT
* * * * * * * * * * * *
549999 TGAAATATAATCTGTTTTAATC-AAAAATTTTAAAAAATTTAACTTAAAATTAGTAATCAAATTA
63 TCAATTATAATATATTTTAA-CAAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTA
* *
550063 TAAAACCATTTAAAG-TGAGTAATAAAGCTTTCGACA-GTTTGAGT
127 TAAAACCATTTAAAGAT-AGTAAT-AAGCTTTTGA-AGGCTTGAGT
* ** * * *
550107 GACTATAAATGGACTTTTTTTATCAATAGATGGCTTTTGCTTCACTTTTCACAAGGCAAACATTC
1 GACTATAAATGGACTTTTCTTGCCAATGGATGGCTTTTGCTTCACGTTTCTCAAGGC-AACATTC
* * * ** *
550172 AGTTATAGTATATTTTAACTAAAACGGTAAAAAAGTTCAACTTAAAATCAATTATGAGATTATAA
65 AATTATAATATATTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAA
550237 AACCATTTAAAGCA-AGTAATAAGTCTTTTGAAGGCTTGAGT
130 AACCATTTAAAG-ATAGTAATAAG-CTTTTGAAGGCTTGAGT
* ** * * * *
550278 GACTATAAATAGACTTTTCTTATCAATGAATGGGC-TTTGCTTCACATTTCAT-GAGACAGACAT
1 GACTATAAATGGACTTTTCTTGCCAATGGAT-GGCTTTTGCTTCACGTTTC-TCAAGGCA-ACAT
* * * ** *
550341 TTAGTTATAATATATTTTAACTAAAAATGTAAAAAGGTTTAACTTAAAATCAATTATGAGATTAT
63 TCAATTATAATATATTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTAT
** ** *
550406 AAAACCA-TT-----TA--ACCAAGCTTTCAAAGGCTAGAGT
128 AAAACCATTTAAAGATAGTAATAAGCTTTTGAAGGCTTGAGT
* * * * ** *
550440 AACTATAAGTGGACTTTTCTTGTCAAT-AAGTAACTTTTGCTTCACGTTTC-CTAAGGTAGACAT
1 GACTATAAATGGACTTTTCTTGCCAATGGA-TGGCTTTTGCTTCACGTTTCTC-AAGGCA-ACAT
* * * * * * * * *
550503 TCCAGTATAATCTATTTTAATC-AAATATTTAGAAAAATTCAACTAAAAATGAATAATGAGATTA
63 TCAATTATAATATATTTTAA-CAAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTA
* * ** * *
550567 TAAAAGCATTTAAA-CTGAGTAATAAGGCTTTCCAAGACTTGAGA
127 TAAAACCATTTAAAGAT-AGTAATAA-GCTTTTGAAGGCTTGAGT
* * * * * * *
550611 AACTGTGAATGGACTTTTCTTGCCAATAGATGGCTTTTGCTCCATGTTTCTCAAAGCAAACATTC
1 GACTATAAATGGACTTTTCTTGCCAATGGATGGCTTTTGCTTCACGTTTCTCAAGGC-AACATTC
* * ** * * *
550676 AATTATAATATATTTTAACTAAAAATGCAAAAACTTTCAACTTAAAATTAATTATGAGGTTATCA
65 AATTATAATATATTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAA
** **** *
550741 AACCATTTAAAGCA-AGTAATAAGGCTTCCGAAAAAATAAGT
130 AACCATTTAAAG-ATAGTAATAA-GCTTTTGAAGGCTTGAGT
* * ** * * * *
550782 GACTATAAATAGATTTTTCTCACCAATGAATGGCTTTTTCTTCACGTTTCTCAGGGTATACATTC
1 GACTATAAATGGACTTTTCTTGCCAATGGATGGCTTTTGCTTCACGTTTCTCAAGGCA-ACATTC
* * * * * * * *
550847 AAATATAATCTATTTTAACTAAAAATATAAAACAATTCAACTTAAAATCAGTAATGACATTATAA
65 AATTATAATATATTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAA
* *
550912 AATCATTTAAAGCA-AGTAATAAGGCTTTCT-AAGGCTTAAGT
130 AACCATTTAAAG-ATAGTAATAA-GCTTT-TGAAGGCTTGAGT
* * * * * *
550953 GAGTATAAATGAACTTTTTTTGCAAATGGATGGCTTTTGCCTCACGTTTCTCAAGGCATACACTC
1 GACTATAAATGGACTTTTCTTGCCAATGGATGGCTTTTGCTTCACGTTTCTCAAGGCA-ACATTC
** * ** * ** * *
551018 AAAAAGAA-ATTATTTTAATGAAAAATATAAATCAA-TCTAACTTAAAATCAATGATGAGATCAT
65 AATTATAATA-TATTTTAACAAAAAATGTAAAAAAATTC-AACTTAAAATCAATTATGAGATTAT
** ** * *
551081 AAAAGAATTTAAAGCA-AGTAATAAAGCTTTCAAAAGCTTGAGC
128 AAAACCATTTAAAG-ATAGTAAT-AAGCTTTTGAAGGCTTGAGT
* * * * **
551124 GACTAGAAATGGACTTTTCTTGTCAATAGAGGGCTTTTGCTTCACGTTTGACAAGGCAGACATTC
1 GACTATAAATGGACTTTTCTTGCCAATGGATGGCTTTTGCTTCACGTTTCTCAAGGCA-ACATTC
* * *
551189 AAATATAATATGTTTTAATCAAAAAA-GTAAAACAATTCAACTTAAAATCAATTATGAGATTATA
65 AATTATAATATATTTTAA-CAAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATA
* *
551253 AAACCATTTAAAG-TGAGCAATAAGGC--TTGCAACGACTTGAGT
129 AAACCATTTAAAGAT-AGTAATAA-GCTTTTG-AA-GGCTTGAGT
* * * * * * *
551295 GGCTATAAATAGACTTTTCTTACAAATGGATGACTTTTGCTTCACGTTTC-CTAAGACAAACAAT
1 GACTATAAATGGACTTTTCTTGCCAATGGATGGCTTTTGCTTCACGTTTCTC-AAGGC-AACATT
* * * * * * *
551359 CAAATATAATTTGTTTCAATAAAAAATATAAAAAAATTCAACTTAAAATCAGTTATGAGATTATA
64 CAATTATAATATATTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATA
* * * * * *
551424 AAATCATTTAAAGCTATTAATAAGTTTTTTAAAGGGTTGAGT
129 AAACCATTTAAAGATAGTAATAAG-CTTTTGAAGGCTTGAGT
* * * ** *
551466 GACTATAAAT-GTCTTTTCTAGCAAATGGATGGCTTTTGCTTCACG-TTCTTGAGGTAAACATTC
1 GACTATAAATGGACTTTTCTTGCCAATGGATGGCTTTTGCTTCACGTTTCTCAAGG-CAACATTC
* * * * *
551529 AGTTATAATATATTTTAACTAAAAATATAAAAATATTCAACTTAAAATTAATTATGAGATTATAA
65 AATTATAATATATTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAA
* * ** *
551594 AACCATTTAAAGGTAGCAATAAGGCTTACGAAGGCTTAAGT
130 AACCATTTAAAGATAGTAATAA-GCTTTTGAAGGCTTGAGT
* * *
551635 GACTATAAATGGACTTTTCTTGCCAATGGATGGCTTTTGCTTCACATTTCTTGAGGTGC-ACATT
1 GACTATAAATGGACTTTTCTTGCCAATGGATGGCTTTTGCTTCACGTTTC-TCAAG-GCAACATT
* * * * * *
551699 CAAATATAATCTGTTTTAATAAAAAATGTTAAAAAA-TCTAACTTAAAATCTATTATGAGATTAT
64 CAATTATAATATATTTTAACAAAAAATGTAAAAAAATTC-AACTTAAAATCAATTATGAGATTAT
* * ** * **
551763 AAAACAATTTCAAGGGAGAAATAAGTCTTTCAAAGGCTTGAGT
128 AAAACCATTTAAAGATAGTAATAAG-CTTTTGAAGGCTTGAGT
* * *
551806 GACTATAAATGGATTTTTCTTGCCAATGGAGGGC-TTTGACTTCACGTTTCTTAAGGCCAACATT
1 GACTATAAATGGACTTTTCTTGCCAATGGATGGCTTTTG-CTTCACGTTTCTCAAGG-CAACATT
* * * * * * *
551870 CAAATATAATCTGTTTTAACTAAAAATATAAAACAATTCAACTTAAAATCAATTACGAGATTATA
64 CAATTATAATATATTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATA
*
551935 AAACCATTTAAAG-TGAGTAATAAGGCTTTT-AACGGCTTTAGT
129 AAACCATTTAAAGAT-AGTAATAA-GCTTTTGAA-GGCTTGAGT
* * * *
551977 GACTGTAAATGGACTTTTCTTACCAATGAATGGCTTTTTGCTTCACGTTTC-CTGAGGCAAACAT
1 GACTATAAATGGACTTTTCTTGCCAATGGATGGC-TTTTGCTTCACGTTTCTC-AAGGC-AACAT
* * * * * *
552041 TCAAATGTAATTTATTTTAACTAAAAATGTAAAAATATTCAACTTAAAATCAATAATGAGATTAT
63 TCAATTATAATATATTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTAT
* *
552106 AAAACCATTTAAAG-TAAGTAATAAGGTTATTGAAAGCTTGAGT
128 AAAACCATTTAAAGAT-AGTAATAAGCTT-TTGAAGGCTTGAGT
* * * * ** **
552149 GACTATAAATGGACTTTTCTTGTCAATGAATAGG-TTTTGTTTCACATTTCTTGAGGTTA-A-T-
1 GACTATAAATGGACTTTTCTTGCCAATGGAT-GGCTTTTGCTTCACGTTTCTCAAGGCAACATTC
* * * * *
552210 AGTTATAATTTATTTTAACAAAAAGTGTAAAAAAATTAAACTTAAAATCAATTATGAGATTAGAA
65 AATTATAATATATTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAA
* * * *
552275 AACCATTTAAAAAAAGTAATAATGCTTTCGAAAGCTTGAGT
130 AACCATTTAAAGATAGTAATAA-GCTTTTGAAGGCTTGAGT
* * * * * * * *
552316 GGCTACAAATGGACATTTCCTGCCAATGGATGTCTTTTGCATT-ACATTTCTCGAGACAGACATT
1 GACTATAAATGGACTTTTCTTGCCAATGGATGGCTTTTGC-TTCACGTTTCTCAAGGCA-ACATT
* * ** * * *
552380 TAATTATAATTTATTTTAATTAAAAATGTAAAAAAAATCAACATAAAATCAATTATGAGATTATT
64 CAATTATAATATATTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATA
** * *
552445 AAACCATTTAAAGCGAGTAATACGGC-TTTCAATGGCTTGAGT
129 AAACCATTTAAAGATAGTAATA-AGCTTTTGAA-GGCTTGAGT
* * * * * *** *
552487 AACTATAAATAGACTTTTTTTACTAATGGATAATTTTTGCTTCACGTTTC-CTAAAGCAGACATT
1 GACTATAAATGGACTTTTCTTGCCAATGGATGGCTTTTGCTTCACGTTTCTC-AAGGCA-ACATT
* * * * * * * *
552551 CAAATATAATCTATTTTAACAAAAAAATGT-AAAACATTGAACCTAAAATTAATAATAAGATTAT
64 CAATTATAATATATTTTAAC-AAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTAT
* ** * *
552615 AAAACCATTTAATGCGACTAATAAAG-TTATCGAAGGCTTGAGT
128 AAAACCATTTAAAGATAGTAAT-AAGCTT-TTGAAGGCTTGAGT
* * * *
552658 GACTATAAATGGACTTTTCTTGTCAATGGATGACTTTTGCTTCACTTTTC-CAGAGGCAGATATT
1 GACTATAAATGGACTTTTCTTGCCAATGGATGGCTTTTGCTTCACGTTTCTCA-AGGCA-ACATT
* * * * * * * *
552722 CAATTATAATTTATTTTAACCAAACATATAATACAATTCAACTTAAAATGAATTATGAGACTATA
64 CAATTATAATATATTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATA
* ** *
552787 AAACTATTTAAAGCGAGTAATAAGGC-TTCGAAGGCTTGAGT
129 AAACCATTTAAAGATAGTAATAA-GCTTTTGAAGGCTTGAGT
* ** * * * *** * * *
552828 GATTGGAAATGAACTTTTCTTGCCAATAGATGGCTTTTTCTTTGTGTTTCACTAGGCAAACATTT
1 GACTATAAATGGACTTTTCTTGCCAATGGATGGCTTTTGCTTCACGTTTCTCAAGGC-AACATTC
* * *
552893 AGTTTTAATATAATTTTAATC-AAAAATAG-AAAAAAGCTT-AACTTAAAATCAATTATGAGATT
65 AATTATAATAT-ATTTTAA-CAAAAAAT-GTAAAAAA-ATTCAACTTAAAATCAATTATGAGATT
* * ** **
552955 ATAAAATCATTTAAAG-TGAGCAATAAGGCTTTCAAACTCTTGAGT
126 ATAAAACCATTTAAAGAT-AGTAATAA-GCTTTTGAAGGCTTGAGT
* * * * * * * * * *
553000 GAATATAAATGGACCTTTCTTACCAATGGGTAGCTTTCGCTTTATGTTTCTTGAA-GCAAACAAT
1 GACTATAAATGGACTTTTCTTGCCAATGGATGGCTTTTGCTTCACGTTTC-TCAAGGC-AACATT
* * * * * *
553064 CAAATATAATCT-TCTTTAACCAACAATGTAAAAAAATTTAACTTAAAATCAATTAAGAGATTAT
64 CAATTATAATATAT-TTTAACAAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTAT
* * * * *
553128 AATACCATTTAAAGCTGGTAATAAGTTTTCTGAAGGCTAGAGT
128 AAAACCATTTAAAGATAGTAATAAGCTTT-TGAAGGCTTGAGT
* * * * * *
553171 GATTATAAATGGACTTTTCCCT-CAAATGGATAGCTTTTGCTTCACGTATC-CTAAGGCAGACGT
1 GACTATAAATGGACTTTT-CTTGCCAATGGATGGCTTTTGCTTCACGTTTCTC-AAGGCA-ACAT
** * * * *
553234 TCTGTTATAATATATTTTAAC-CAAAATGTAAAAAAATATTTAACTTAAAATCAAGTATGTGATT
63 TCAATTATAATATATTTTAACAAAAAATGT-AAAAAA-ATTCAACTTAAAATCAATTATGAGATT
**** * * * *
553298 GCGTAATCATTTAAAGGA-AGTGATAAGGCTTTTAAAGGCTTAAGT
126 ATAAAACCATTTAAA-GATAGTAATAA-GCTTTTGAAGGCTTGAGT
* * * * *
553343 -ACTATAAATGGACTTTTCTTGCCAATGGATAGCTTTTACTTTACGTTTCCCAAGGTAACCATTC
1 GACTATAAATGGACTTTTCTTGCCAATGGATGGCTTTTGCTTCACGTTTCTCAAGGCAA-CATTC
* ** * *
553407 AGTTATAATATATTTTAATC-AAAAATACAAAAAAATTCAACTTCAAATCAATAATGAGATTATA
65 AATTATAATATATTTTAA-CAAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATA
* * ** * *
553471 AAACAATTTGAAGCGAGTAATAAGGCTTTCGAAGGCTTGAGC
129 AAACCATTTAAAGATAGTAATAA-GCTTTTGAAGGCTTGAGT
* * * * * *
553513 GACTACAAATGGACTTTTCTTGCTAATGGATAGATTTTGCTTCATGTTTACT-AAGGTAA-ATAG
1 GACTATAAATGGACTTTTCTTGCCAATGGATGGCTTTTGCTTCACGTTT-CTCAAGGCAACAT--
* * * * * * * *
553576 TCAAATACAATCTGTTTTAACCAAAAATATAAAAAAATTTAACTTAAAATCAATTATGAGGTTAT
63 TCAATTATAATATATTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTAT
* * * * ** *
553641 CAAACCACTTAAAGCA-AGTAATAAGGCTTTCGAAAGAATGGGT
128 AAAACCATTTAAAG-ATAGTAATAA-GCTTTTGAAGGCTTGAGT
** * * * * * *
553684 GACTATAAATAAACTTTTCTTGTCAATGAAT-GATTTTCTCTTCAC-TTTTTCCAAAGCAGACAT
1 GACTATAAATGGACTTTTCTTGCCAATGGATGGCTTTT-GCTTCACGTTTCT-CAAGGCA-ACAT
* * * * *
553747 TCAAATATAATCTGTTTTAACCAAAAATAT-AAAAAATTCAACTTAAAATC
63 TCAATTATAATATATTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATC
553797 NNNNNNNNNN
Statistics
Matches: 6442, Mismatches: 1388, Indels: 597
0.76 0.16 0.07
Matches are distributed among these distances:
161 3 0.00
162 115 0.02
163 7 0.00
165 7 0.00
166 117 0.02
167 142 0.02
168 11 0.00
169 340 0.05
170 1015 0.16
171 3594 0.56
172 1023 0.16
173 61 0.01
174 7 0.00
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.35
Consensus pattern (169 bp):
GACTATAAATGGACTTTTCTTGCCAATGGATGGCTTTTGCTTCACGTTTCTCAAGGCAACATTCA
ATTATAATATATTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAA
ACCATTTAAAGATAGTAATAAGCTTTTGAAGGCTTGAGT
Found at i:546818 original size:342 final size:341
Alignment explanation
Indices: 545498--553796 Score: 6606
Period size: 342 Copynumber: 24.3 Consensus size: 341
545488 GTCAATTCGA
** * * * *** * *
545498 GACTATAAATTAACTTTTCTTATCAATGGATGGCTTTTTCATCACGTTTCTTGAGACAGACATTC
1 GACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCCCAAGGCAAACATTC
** * ** *
545563 AGTTATAATTTATTTTAAACAAAAATGTAAAAACACCCAACTTAAAATCAATTATGAGACTATAA
66 AAATATAA-TTATTTTAAACAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAA
** * ** * * *
545628 AATAATTTAAATG-GAGTAATAAAGCTTTT-GAAGGCTTGAGCCACTAGAAATGAACTTTTATTG
130 AACCATTTAAA-GCGAGTAAT-AAGGTTTTCGAAGGCTTGAGTGACTATAAATGGACTTTTCTTG
* * * * * *
545691 TCAATAGATGGCTTGTCCTTCATGTTT-CTCGAGGCAGACATTCAGTTATAATATATTTTAACTA
193 CCAATGGATGGCTTTTGCTTCACGTTTCCT-GAGGCAGACATTCAGTTATAATATATTTTAACCA
* * * * *
545755 AAAATATAAAAAAATACAACTTAAAATCAATAATGAGAATAT-AAACCATTTACAGCGAATAATA
257 AAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATA
* *
545819 AAGCTTTTGAAGGCTTGAGT
322 AGGCTTTCGAAGGCTTGAGT
* * * * * *
545839 AACTAGAAATGGACTTTCCTTGTCAATGGATGGCTTTTGCTTCATGTTTTCCAAGGCAAACAATC
1 GACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCCCAAGGCAAACATTC
* * *
545904 AAATATAATCTATTTT-AACAAAAAATGTAAAACAATTCAACTTAAAATCAATTATGTGAATATA
66 AAATATAAT-TATTTTAAAC-AAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATA
* * ** *** ** *
545968 AATCCATTTCAAGATAGTAATAA-GTTTTTTTAGCGCTTGAGTGACTATAAATTAACTTTTC-TC
129 AAACCATTTAAAGCGAGTAATAAGGTTTTCGAAG-GCTTGAGTGACTATAAATGGACTTTTCTTG
* * * *
546031 CCAAATGGATGGCTTTTGCTTCACATTT-CTCAAGGCCA-ACATTTAGTTATAATATAGTTTAAC
193 CC-AATGGATGGCTTTTGCTTCACGTTTCCT-GAGG-CAGACATTCAGTTATAATATATTTTAAC
* * * * * * * * *
546094 AAAAAATGTAACAAAA-TGAACTTAAAATCAATAATGAGAATATGAAACTATTTAAAGCGAATAA
255 CAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAA
*
546158 TAAGGCTTTTGAAGGCTTGAGT
320 TAAGGCTTTCGAAGGCTTGAGT
* * * * * * * * * * *
546180 GACTAGAACTAGACTTTTCTTATCTATAGATGACTTTTGCTTCACGTTTCTCAAGGTAAACAGTG
1 GACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCCCAAGGCAAACATTC
* ** * * *
546245 AAATATAATCTTTTTTAATGAAAAATATAAAAAAA-TAAACTTAAAATTAATTATGCA-ATTATA
66 AAATATAAT-TATTTTAAACAAAAATGTAAAAAAATTCAACTTAAAATCAATTATG-AGATTATA
* *** * ** **
546308 AAACCATTTAAAGCTAGTAATAA-GTTTTTTTAGGACTT-AGTGACTATTAATCAACTTTTCTCA
129 AAACCATTTAAAGCGAGTAATAAGGTTTTCGAAGG-CTTGAGTGACTATAAATGGACTTTTCTTG
* * * * ** * *
546371 CAAATGGATGGCTTTTGTTTTATGTTTCCTGAGATAGACATTC-GACTATAATATATTTTAACAA
193 CCAATGGATGGCTTTTGCTTCACGTTTCCTGAGGCAGACATTCAG-TTATAATATATTTTAACCA
* * *
546435 AAAATGTAAAAAAATTTAACTTAAAATCAATTATGAGATTATAAAACCATTAAAAGCGAGTAATA
257 AAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATA
* *
546500 AGGCTATCGAAGGCTTGAGA
322 AGGCTTTCGAAGGCTTGAGT
* * * * ***
546520 GACTATAAATGGACTTTTCTTATGAATGGATGGCTTTTACATCACGTTTCCCAAGGCAGGTATTC
1 GACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCCCAAGGCAAACATTC
* * * * * * *
546585 CATTTTAATTAATTTTAAACAACAATGTAAAAAAACTCTACTTAAAATCAATTATGAGACTATAA
66 AAATATAATT-ATTTTAAACAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAA
* * * * * * * *
546650 AATCTTTTAAAGCGAATAATAAGGTTTTGGAAGACTTGAGTGACTAGAAATGGACTTTTTTTACC
130 AACCATTTAAAGCGAGTAATAAGGTTTTCGAAGGCTTGAGTGACTATAAATGGACTTTTCTTGCC
* * * * * *
546715 AATGGATGGCTTTTGCTTTAGGTTTCCTGACGCAAACATTAAATTATAATATATTTTAACCAAAA
195 AATGGATGGCTTTTGCTTCACGTTTCCTGAGGCAGACATTCAGTTATAATATATTTTAACCAAAA
* * * * * * * *
546780 AAATAAAAAAATTTAACTTAAAACCAATAATTAGATTATAAAACTATTTAAAGTGAGTAATGAGG
260 ATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGG
*
546845 CTTTCG-AGAGCTTAAGT
325 CTTTCGAAG-GCTTGAGT
* ** * * * **
546862 GACTATAAATAGACTTTTCTTCCCAACGGATGGCTTTTGCTTCACATTTCCCAAGACAAGTAGTT
1 GACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCCCAAGGCAAACA-TT
* * * * *
546927 -AGATATAATCTATTTTAACCAAAAATGAAAAAAAAATTCAACTTAAAATCAATTATGCGATTAC
65 CAAATATAAT-TATTTTAAACAAAAATG-TAAAAAAATTCAACTTAAAATCAATTATGAGATTAT
* * ** * * *
546991 AAAATCATTTAAAGCAAGTAATAA-GTTTTATTAAGGCTTAAGCGACTATAAATTGACTTTT-TT
128 AAAACCATTTAAAGCGAGTAATAAGGTTTT-CGAAGGCTTGAGTGACTATAAATGGACTTTTCTT
* * * * *
547054 CCCAAATAGATGGCTTTTGCTTCACGTTT-TTCAAGGCAGACATTCAGTTATAATATATTTTTAT
192 GCC-AATGGATGGCTTTTGCTTCACGTTTCCT-GAGGCAGACATTCAGTTATAATATA-TTTTAA
* * * * * * *
547118 CAAAAAATGTAAAACAATTTAACTTAAAATCAATAATTAGATTATAAAACCATGTAAAGCGAGTA
254 CCAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTA
** * *
547183 ATAAGGCTTTTAAAGGATTTAGT
319 ATAAGGCTTTCGAAGGCTTGAGT
* ** * * *
547206 GACTATAATTGGACTTTTCTTGTCAATGGATGGCTTTTTTTTCACGTTTTCCAA-GCTAAATAGT
1 GACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCCCAAGGC-AAACATT
* * * * * *
547270 CAAATATAATCTGTTATAACCAAAAATGTAAAAAAAATTGAAGTTAAAATCAATTATGCGATTAT
65 CAAATATAAT-TATTTTAAACAAAAATGT-AAAAAAATTCAACTTAAAATCAATTATGAGATTAT
* ** * * * *
547335 AAAACTATTTAAAGATAGTAATAAGTTTTTTGAGGGCTTGAGTGACTATAAATCGACTTTT-TT-
128 AAAACCATTTAAAGCGAGTAATAAGGTTTTCGAAGGCTTGAGTGACTATAAATGGACTTTTCTTG
* * *** * *
547398 CATAAATAGATGGCTTTTGCTTTGTGTTTCATGAGGCAGACATTCAGTTATAACATATTTTAACC
193 C--CAATGGATGGCTTTTGCTTCACGTTTCCTGAGGCAGACATTCAGTTATAATATATTTTAACC
* * * * *
547463 AAAAATATAAAAATATTCAATTTAAAATCAATAATTAGATTATAAAACCATTTAAAGCTAGTAAT
256 AAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAAT
* * *
547528 AAGGCTTTTGAAGGCGT-AGGA
321 AAGGCTTTCGAAGGCTTGA-GT
* * * * * ** * ** * *
547549 GACTATAAATAGA-TATTTCTTGCCAACGGATTGCTTTTACTTCATATTTCCTAA-GTTAATAGT
1 GACTATAAATGGACT-TTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCCCAAGGCAAACATT
* * * * * *
547612 CAAATATAATATGTTTTAATCAAAAATATAAAAAAATTTAATTTAAAATCAATTATGCGATTATA
65 CAAATATAAT-TATTTTAAACAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATA
* * * * * * * * **
547677 AAACTATTTAAAGCTAGTTATAA-GTTTGCCTAGGGCTTGAATGACTATAATTCAACTTTTCTTG
129 AAACCATTTAAAGCGAGTAATAAGGTTT-TCGAAGGCTTGAGTGACTATAAATGGACTTTTCTTG
* * * * * * * * * * **
547741 CAAATAGATAGCTTTTGCTTTACGTTT-TTCAAGGTAGATATTCAATTATAATATATTTAAATTA
193 CCAATGGATGGCTTTTGCTTCACGTTTCCT-GAGGCAGACATTCAGTTATAATATATTTTAACCA
* * * * *
547805 AAAATATAAAACATTTCACCTTAAAATCAATAATTAGATTATAAAACCATTTAAAGCGAGTAATA
257 AAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATA
547870 AGGCTTTCGAAGGCTTGAGT
322 AGGCTTTCGAAGGCTTGAGT
* * * * * *
547890 GACTATAAATAGACTTTTCTTGTCAACGGATGGCTTTTGCTTCATGTTTCCCAAAGTAAACAGTC
1 GACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCCCAAGGCAAACATTC
* * ** *
547955 AAATATAATCTGTTTT-AACAAAAAATGTAAAAAAATTAAACTGGAAATCAATTATGTGATTATA
66 AAATATAAT-TATTTTAAAC-AAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATA
* ** * * * *
548019 AAACCACTTAAAGATAGTAATAAGTTTTTTGAAGGCTTTAGTGACTATAAATTGG-CTTTTGTAT
129 AAACCATTTAAAGCGAGTAATAAGGTTTTCGAAGGCTTGAGTGACTATAAA-TGGACTTTTCT-T
* * *
548083 --AAATGGATAGG-TTTTGCTTCATGTTTCCTGAGGCAGAGATTCAGTTATAATATATTTTAACC
192 GCCAATGGAT-GGCTTTTGCTTCACGTTTCCTGAGGCAGACATTCAGTTATAATATATTTTAACC
* *
548145 AAAAATATAAAAAAACTTCAACTTAAAATCAATTATGAGATTATAAAA-CTTTTGAAAGCAAGTA
256 AAAAATATAAAAAAA-TTCAACTTAAAATCAATTATGAGATTATAAAACCATTT-AAAGCGAGTA
* * *
548209 ATAAGGCTATCGAAGGCTTGGGA
319 ATAAGGCTTTCGAAGGCTTGAGT
* * * * * * * ** * * *
548232 AACTATAAATGAATTTTTCTTATAAATGGATAGCTTTTGCTTCATGTTTCTTAAAGCAAAAATTT
1 GACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCCCAAGGCAAACATTC
** * * *
548297 AGTTATAATTTATTTTTTAA-AAAAATGTAAAAAAATTCAACTTAAAAGCAACTATGAGATTATA
66 AAATATAA-TTA-TTTTAAACAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATA
* * * * *
548361 AAATCATTTAAAGCGAGTAATAAGGCTATCGAAGGCTTGAGAGACTATAAATGGACTTTTCTTGT
129 AAACCATTTAAAGCGAGTAATAAGGTTTTCGAAGGCTTGAGTGACTATAAATGGACTTTTCTTGC
* *
548426 CAATGGATGGCTTTTGCTTCACGTTTCCTGAGGTAGACATTCACTTATAATATATTTTCAACCAA
194 CAATGGATGGCTTTTGCTTCACGTTTCCTGAGGCAGACATTCAGTTATAATATATTTT-AACCAA
* * * *
548491 AAATGTAAAAAAATTCAACTTAAAATCAATTATAAGATTATAAAACCATTTAAACCGAATAATAA
258 AAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAA
* *
548556 GGCTATCGAAGGCTTGAGA
323 GGCTTTCGAAGGCTTGAGT
* * * * * *
548575 GACTATAAATCGACTTTTTTTGTCAATGGATGGCTTTTGCTTCACGTTT-CTAGAGGTAGACTTT
1 GACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCCCA-AGGCAAACATT
**** * * * * *
548639 TGGTTATAATT-TGTTTTAA-AAAAATATAAAAAAGCTT-AACTTAAAATAAATTATGAGACTAT
65 CAAATATAATTAT-TTTAAACAAAAATGTAAAAAA-ATTCAACTTAAAATCAATTATGAGATTAT
* * * * * ** *
548701 AAAACTATTTAAAGAGAATAATAAGGCTTTT-AAAAGCTTGAGCAACTAAAAATGGACTTTTCTT
128 AAAACCATTTAAAGCGAGTAATAAGG-TTTTCGAAGGCTTGAGTGACTATAAATGGACTTTTCTT
* ** * ** ** * *
548765 GTCAATTAATAGCTTTTGCTTCACGTTTCCCAAGAAAAACATTCAGTTATAATATATTTTAAGCA
192 GCCAATGGATGGCTTTTGCTTCACGTTTCCTGAGGCAGACATTCAGTTATAATATATTTTAACCA
* * * * * *
548830 AAAATGTAGAAAAATTTAACTTAAAATCAATTATGA-AGTTATCAAACCACTTAAAGCAAGTAAT
257 AAAATATAAAAAAATTCAACTTAAAATCAATTATGAGA-TTATAAAACCATTTAAAGCGAGTAAT
* ** *
548894 AAGGCTTTCGAAAGAATGTGT
321 AAGGCTTTCGAAGGCTTGAGT
* ** * * * *
548915 GACTATAAATAGG-CATTTCTTGTCAATAAATGGCTTTTTCTTCACTTTTCTCGAGGCAAACATT
1 GACTATAAAT-GGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCCCAAGGCAAACATT
* * * * * * *
548979 CAAATATGATCTATTTTGATCAAAAATATAAAAAAAATCAACTTAAAATCAGTAATGAGATTATA
65 CAAATATAAT-TATTTTAAACAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATA
* * * *
549044 AAACCATTTCAAGCGAGTAATAAGGCTTTC----G-TTGAATGACTATAAATGGACTTTTCTTGT
129 AAACCATTTAAAGCGAGTAATAAGGTTTTCGAAGGCTTGAGTGACTATAAATGGACTTTTCTTGC
* * * * * * * * **
549104 TAATGGATGGTTTTTGCTTCATGTCT-CTCGAGGTAGACATTTAGTTATAATTTAATTTAACCTC
194 CAATGGATGGCTTTTGCTTCACGTTTCCT-GAGGCAGACATTCAGTTATAATATATTTTAACCAA
* * * *
549168 AAATGTGAAAAGATTCAACTTAAAATCAATTATGAG-TCTATAAAACCATTTAAAGTGAGTAAGT
258 AAATATAAAAAAATTCAACTTAAAATCAATTATGAGAT-TATAAAACCATTTAAAGCGAGTAA-T
** * *
549232 -AGGCTTTTAAAGTCTTGAGC
321 AAGGCTTTCGAAGGCTTGAGT
* * * * * * * * *
549252 GACTATAAATAGACTTTTCTTGCCAATAGATGGCTTTCGCTTCACGTTTCCCTATGTAGACAATC
1 GACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCCCAAGGCAAACATTC
* * * ** * * * *
549317 AATTATAATATATTTTTATCAAAAATACAAAAATATTTAACTTAAAATAAATTATAAGATTATAA
66 AAATATAAT-TATTTTAAACAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAA
* * ** * * * *
549382 AACTATTTAGATAGAGTAATAAGGCTTTCGAAGGCTTTAGTGACTATAAATAGACTTTTCTTGCA
130 AACCATTTAAAGCGAGTAATAAGGTTTTCGAAGGCTTGAGTGACTATAAATGGACTTTTCTTGCC
* ** * * * * * *
549447 AATGGATCGCTTTTGCTTCATATTTTC-GAGGTAAATATTCAGTTATAATATGTTTTAACTAAAA
195 AATGGATGGCTTTTGCTTCACGTTTCCTGAGGCAGACATTCAGTTATAATATATTTTAACCAAAA
* * * * * *
549511 ATGTAAAAAAATTCAATTTAAAATCAATCATGAGATTATAAAACC-TTTCAAAGGGAGCAATAAA
260 ATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTT-AAAGCGAGTAATAAG
* ** *
549575 TCTTTTAAAGGCTTGAAT
324 GCTTTCGAAGGCTTGAGT
* * ** *
549593 GACTATAAATAGACTTTTCTTGTCAATGGATGCCTTTTGCTTCACGTCCCCCAAAGCAAACATTC
1 GACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCCCAAGGCAAACATTC
** * *
549658 AGTTATAATTAATTTTAATA-AAAAATGTAAAAAATTTTAACTTAAAATCAATTATGAGATTATA
66 AAATATAATT-ATTTTAA-ACAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATA
* * * * * *
549722 AAACCATTTAAAGAGAGCAATAAAGCTTTC-AATTGCTTGAGTGACTATAAATGGACTTTTCTTA
129 AAACCATTTAAAGCGAGTAATAAGGTTTTCGAA-GGCTTGAGTGACTATAAATGGACTTTTCTTG
** * * **
549786 CCAATGGATGG-TTTTCGCTTCATATTTCCTGAAGCAGACATTCAATTATAATATATTTTAATTA
193 CCAATGGATGGCTTTT-GCTTCACGTTTCCTGAGGCAGACATTCAGTTATAATATATTTTAACCA
* * ** * * * * **
549850 AAAATATAAACAAATTTAGTTTAGAATCAATTATGAGGTTATCAAACCACTTAAAGTAAGTAATA
257 AAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATA
**** *
549915 AGGCTTTCGAAATAATGGGT
322 AGGCTTTCGAAGGCTTGAGT
* * ** * * ** ** * * *
549935 GACTATAAATAGATTTTTCTTGTGGATGAACGGCTTTTTTTTTCATATTTTCCAAGGTAGACATT
1 GACTATAAATGGACTTTTCTTGTCAATGGATGGC-TTTTGCTTCACGTTTCCCAAGGCAAACATT
* * * * * * * * * * *
550000 GAAATATAATCTGTTTTAATCAAAAATTTTAAAAAATTTAACTTAAAATTAGTAATCAAATTATA
65 CAAATATAAT-TATTTTAAACAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATA
* * * * * *
550065 AAACCATTTAAAGTGAGTAATAAAGCTTTCGACA-GTTTGAGTGACTATAAATGGACTTTTTTTA
129 AAACCATTTAAAGCGAGTAATAAGGTTTTCGA-AGGCTTGAGTGACTATAAATGGACTTTTCTTG
* * * * * * *
550129 TCAATAGATGGCTTTTGCTTCACTTTTCAC-AAGGCAAACATTCAGTTATAGTATATTTTAACTA
193 CCAATGGATGGCTTTTGCTTCACGTTTC-CTGAGGCAGACATTCAGTTATAATATATTTTAACCA
*** * *
550193 AAACGGTAAAAAAGTTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATA
257 AAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATA
* *
550258 AGTCTTTTGAAGGCTTGAGT
322 AGGCTTTCGAAGGCTTGAGT
* * * * *** * *
550278 GACTATAAATAGACTTTTCTTATCAATGAATGGGC-TTTGCTTCACATTTCATGAGACAGACATT
1 GACTATAAATGGACTTTTCTTGTCAATGGAT-GGCTTTTGCTTCACGTTTCCCAAGGCAAACATT
* ** ** *
550342 TAGTTATAATATATTTT-AACTAAAAATGTAAAAAGGTTTAACTTAAAATCAATTATGAGATTAT
65 CAAATATAAT-TATTTTAAAC-AAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTAT
* * * * * *
550406 AAAACCATTT-AA-C------CAA-GCTTTCAAAGGCTAGAGTAACTATAAGTGGACTTTTCTTG
128 AAAACCATTTAAAGCGAGTAATAAGGTTTTCGAAGGCTTGAGTGACTATAAATGGACTTTTCTTG
* * ** * * * *
550462 TCAAT-AAGTAACTTTTGCTTCACGTTTCCTAAGGTAGACATTCCAG-TATAATCTATTTTAATC
193 CCAATGGA-TGGCTTTTGCTTCACGTTTCCTGAGGCAGACATT-CAGTTATAATATATTTTAACC
* * * * * * *
550525 AAATATTTAGAAAAATTCAACTAAAAATGAATAATGAGATTATAAAAGCATTTAAA-CTGAGTAA
256 AAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGC-GAGTAA
* * *
550589 TAAGGCTTTCCAAGACTTGAGA
320 TAAGGCTTTCGAAGGCTTGAGT
* * * * * * * * *
550611 AACTGTGAATGGACTTTTCTTGCCAATAGATGGCTTTTGCTCCATGTTTCTCAAAGCAAACATTC
1 GACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCCCAAGGCAAACATTC
* * ** * * *
550676 AATTATAATATATTTT-AACTAAAAATGCAAAAACTTTCAACTTAAAATTAATTATGAGGTTATC
66 AAATATAAT-TATTTTAAAC-AAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATA
* * * **** * * * **
550740 AAACCATTTAAAGCAAGTAATAAGGCTTCCGAAAAAATAAGTGACTATAAATAGATTTTTCTCAC
129 AAACCATTTAAAGCGAGTAATAAGGTTTTCGAAGGCTTGAGTGACTATAAATGGACTTTTCTTGC
* * * * * ** * *
550805 CAATGAATGGCTTTTTCTTCACGTTT-CTCAGGGTATACATTCAAATATAATCTATTTTAACTAA
194 CAATGGATGGCTTTTGCTTCACGTTTCCTGA-GGCAGACATTCAGTTATAATATATTTTAACCAA
* * * * * *
550869 AAATATAAAACAATTCAACTTAAAATCAGTAATGACATTATAAAATCATTTAAAGCAAGTAATAA
258 AAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAA
* *
550934 GGCTTTCTAAGGCTTAAGT
323 GGCTTTCGAAGGCTTGAGT
* * * * * * *
550953 GAGTATAAATGAACTTTTTTTG-CAAATGGATGGCTTTTGCCTCACGTTTCTCAAGGCATACACT
1 GACTATAAATGGACTTTTCTTGTC-AATGGATGGCTTTTGCTTCACGTTTCCCAAGGCAAACATT
* * ** * ** * *
551017 CAAAAAGAAATTATTTTAATGAAAAATATAAATCAA-TCTAACTTAAAATCAATGATGAGATCAT
65 CAAATA-TAATTATTTTAAACAAAAATGTAAAAAAATTC-AACTTAAAATCAATTATGAGATTAT
** * * * * * * *
551081 AAAAGAATTTAAAGCAAGTAATAAAGCTTTCAAAAGCTTGAGCGACTAGAAATGGACTTTTCTTG
128 AAAACCATTTAAAGCGAGTAATAAGGTTTTCGAAGGCTTGAGTGACTATAAATGGACTTTTCTTG
* * * * * ** * *
551146 TCAATAGAGGGCTTTTGCTTCACGTTTGAC-AAGGCAGACATTCAAATATAATATGTTTTAATCA
193 CCAATGGATGGCTTTTGCTTCACGTTT-CCTGAGGCAGACATTCAGTTATAATATATTTTAACCA
* * *
551210 AAAA-AGTAAAACAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGCAAT
257 AAAATA-TAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAAT
* *
551274 AAGGCTTGC-AACGACTTGAGT
321 AAGGCTTTCGAA-GGCTTGAGT
* * * * * * *
551295 GGCTATAAATAGACTTTTCTT-ACAAATGGATGACTTTTGCTTCACGTTTCCTAAGACAAACAAT
1 GACTATAAATGGACTTTTCTTGTC-AATGGATGGCTTTTGCTTCACGTTTCCCAAGGCAAACATT
* *
551359 CAAATATAATT-TGTTTCAATA-AAAAATATAAAAAAATTCAACTTAAAATCAGTTATGAGATTA
65 CAAATATAATTAT-TTT-AA-ACAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTA
* * * * ** * * *
551422 TAAAATCATTTAAAGCTATTAATAAGTTTTTTAAAGGGTTGAGTGACTATAAAT-GTCTTTTCTA
127 TAAAACCATTTAAAGCGAGTAATAAGGTTTTCGAAGGCTTGAGTGACTATAAATGGACTTTTCTT
* * * * *
551486 GCAAATGGATGGCTTTTGCTTCACG-TTCTTGAGGTAAACATTCAGTTATAATATATTTTAACTA
192 GCCAATGGATGGCTTTTGCTTCACGTTTCCTGAGGCAGACATTCAGTTATAATATATTTTAACCA
* * *
551550 AAAATATAAAAATATTCAACTTAAAATTAATTATGAGATTATAAAACCATTTAAAG-GTAGCAAT
257 AAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCG-AGTAAT
* *
551614 AAGGCTTACGAAGGCTTAAGT
321 AAGGCTTTCGAAGGCTTGAGT
* * *** ***
551635 GACTATAAATGGACTTTTCTTGCCAATGGATGGCTTTTGCTTCACATTTCTTGAGGTGCACATTC
1 GACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCCCAAGGCAAACATTC
* * *
551700 AAATATAATCTGTTTTAATA-AAAAATGTTAAAAAA-TCTAACTTAAAATCTATTATGAGATTAT
66 AAATATAAT-TATTTTAA-ACAAAAATGTAAAAAAATTC-AACTTAAAATCAATTATGAGATTAT
* * * * * *
551763 AAAACAATTTCAAGGGAGAAATAA-GTCTTTCAAAGGCTTGAGTGACTATAAATGGATTTTTCTT
128 AAAACCATTTAAAGCGAGTAATAAGGT-TTTCGAAGGCTTGAGTGACTATAAATGGACTTTTCTT
* * * ** * *
551827 GCCAATGGAGGGC-TTTGACTTCACGTTTCTTAAGGCCA-ACATTCAAATATAATCTGTTTTAAC
192 GCCAATGGATGGCTTTTG-CTTCACGTTTCCTGAGG-CAGACATTCAGTTATAATATATTTTAAC
* * * *
551890 TAAAAATATAAAACAATTCAACTTAAAATCAATTACGAGATTATAAAACCATTTAAAGTGAGTAA
255 CAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAA
* *
551955 TAAGGCTTT-TAACGGCTTTAGT
320 TAAGGCTTTCGAA-GGCTTGAGT
* ** * **
551977 GACTGTAAATGGACTTTTCTTACCAATGAATGGCTTTTTGCTTCACGTTTCCTGAGGCAAACATT
1 GACTATAAATGGACTTTTCTTGTCAATGGATGGC-TTTTGCTTCACGTTTCCCAAGGCAAACATT
* * *
552042 CAAATGTAATTTATTTT-AACTAAAAATGTAAAAATATTCAACTTAAAATCAATAATGAGATTAT
65 CAAATATAA-TTATTTTAAAC-AAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTAT
** *
552106 AAAACCATTTAAAGTAAGTAATAAGGTTATT-GAAAGCTTGAGTGACTATAAATGGACTTTTCTT
128 AAAACCATTTAAAGCGAGTAATAAGGTT-TTCGAAGGCTTGAGTGACTATAAATGGACTTTTCTT
* * * * * ** *
552170 GTCAATGAATAGG-TTTTGTTTCACATTTCTTGAGG-TTA-A-T-AGTTATAATTTATTTTAA-C
192 GCCAATGGAT-GGCTTTTGCTTCACGTTTCCTGAGGCAGACATTCAGTTATAATATATTTTAACC
* * * ***
552229 AAAAAGTGTAAAAAAATTAAACTTAAAATCAATTATGAGATTAGAAAACCATTTAAAAAAAGTAA
256 AAAAA-TATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAA
* *
552294 TAATGCTTTCGAAAGCTTGAGT
320 TAAGGCTTTCGAAGGCTTGAGT
* * * * * * * * * * *
552316 GGCTACAAATGGACATTTCCTGCCAATGGATGTCTTTTGCATT-ACATTTCTCGAGACAGACATT
1 GACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGC-TTCACGTTTCCCAAGGCAAACATT
* * ** * * *
552380 TAATTATAATTTATTTTAATTAAAAATGTAAAAAAAATCAACATAAAATCAATTATGAGATTATT
65 CAAATATAA-TTATTTTAAACAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATA
* * * * * *
552445 AAACCATTTAAAGCGAGTAATACGGCTTTC-AATGGCTTGAGTAACTATAAATAGACTTTTTTTA
129 AAACCATTTAAAGCGAGTAATAAGGTTTTCGAA-GGCTTGAGTGACTATAAATGGACTTTTCTTG
* *** * * ** *
552509 CTAATGGATAATTTTTGCTTCACGTTTCCTAAAGCAGACATTCAAATATAATCTATTTTAA-CAA
193 CCAATGGATGGCTTTTGCTTCACGTTTCCTGAGGCAGACATTCAGTTATAATATATTTTAACCAA
* * * * * * * * * *
552573 AAAAATGTAAAACATTGAACCTAAAATTAATAATAAGATTATAAAACCATTTAATGCGACTAATA
258 AAATAT-AAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATA
*
552638 AAG-TTATCGAAGGCTTGAGT
322 AGGCTT-TCGAAGGCTTGAGT
* * * *
552658 GACTATAAATGGACTTTTCTTGTCAATGGATGACTTTTGCTTCAC-TTTTCCAGAGGCAGATATT
1 GACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCCCA-AGGCAAACATT
* * * * * * * *
552722 CAATTATAATTTATTTTAACCAAACATATAATACAATTCAACTTAAAATGAATTATGAGACTATA
65 CAAATATAA-TTATTTTAAACAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATA
* * * ** *
552787 AAACTATTTAAAGCGAGTAATAAGG-CTTCGAAGGCTTGAGTGATTGGAAATGAACTTTTCTTGC
129 AAACCATTTAAAGCGAGTAATAAGGTTTTCGAAGGCTTGAGTGACTATAAATGGACTTTTCTTGC
* * *** * * * *
552851 CAATAGATGGCTTTTTCTTTGTGTTTCACT-AGGCAAACATTTAGTTTTAATATAATTTTAATCA
194 CAATGGATGGCTTTTGCTTCACGTTTC-CTGAGGCAGACATTCAGTTATAATAT-ATTTTAACCA
* * * * *
552915 AAAATAGAAAAAAGCTT-AACTTAAAATCAATTATGAGATTATAAAATCATTTAAAGTGAGCAAT
257 AAAATATAAAAAA-ATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAAT
* **
552979 AAGGCTTTCAAACTCTTGAGT
321 AAGGCTTTCGAAGGCTTGAGT
* * ** * * * * * ** *
553000 GAATATAAATGGACCTTTCTTACCAATGGGTAGCTTTCGCTTTATGTTTCTTGAA-GCAAACAAT
1 GACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTC-CCAAGGCAAACATT
* * * *
553064 CAAATATAATCT-TCTTTAACCAACAATGTAAAAAAATTTAACTTAAAATCAATTAAGAGATTAT
65 CAAATATAAT-TAT-TTTAAACAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTAT
* * *
553128 AATACCATTTAAAGCTG-GTAATAA-GTTTTCTGAAGGCTAGAGTGATTATAAATGGACTTTTCC
128 AAAACCATTTAAAGC-GAGTAATAAGGTTTTC-GAAGGCTTGAGTGACTATAAATGGACTTTT-C
* * * * * * *
553191 CT-CAAATGGATAGCTTTTGCTTCACGTATCCTAAGGCAGACGTTCTGTTATAATATATTTTAAC
190 TTGCCAATGGATGGCTTTTGCTTCACGTTTCCTGAGGCAGACATTCAGTTATAATATATTTTAAC
* * * * **** *
553255 C-AAAATGTAAAAAAATATTTAACTTAAAATCAAGTATGTGATTGCGTAATCATTTAAAG-GAAG
255 CAAAAATAT-AAAAAA-ATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCG-AG
* ** *
553318 TGATAAGGCTTTTAAAGGCTTAAGT
317 TAATAAGGCTTTCGAAGGCTTGAGT
* * * * * *
553343 -ACTATAAATGGACTTTTCTTGCCAATGGATAGCTTTTACTTTACGTTTCCCAAGGTAACCATTC
1 GACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCCCAAGGCAAACATTC
** * ** * *
553407 AGTTATAATATATTTTAATCAAAAATACAAAAAAATTCAACTTCAAATCAATAATGAGATTATAA
66 AAATATAAT-TATTTTAAACAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAA
* * * * * *
553472 AACAATTTGAAGCGAGTAATAAGGCTTTCGAAGGCTTGAGCGACTACAAATGGACTTTTCTTGCT
130 AACCATTTAAAGCGAGTAATAAGGTTTTCGAAGGCTTGAGTGACTATAAATGGACTTTTCTTGCC
* * * * * * * * * ** * * *
553537 AATGGATAGATTTTGCTTCATGTTTACTAAGGTAAATAGTCAAATACAATCTGTTTTAACCAAAA
195 AATGGATGGCTTTTGCTTCACGTTTCCTGAGGCAGACATTCAGTTATAATATATTTTAACCAAAA
* * * * *
553602 ATATAAAAAAATTTAACTTAAAATCAATTATGAGGTTATCAAACCACTTAAAGCAAGTAATAAGG
260 ATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGG
* ** *
553667 CTTTCGAAAGAATGGGT
325 CTTTCGAAGGCTTGAGT
** * * * * * * *
553684 GACTATAAATAAACTTTTCTTGTCAATGAAT-GATTTTCTCTTCACTTTTTCCAAAGCAGACATT
1 GACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTT-GCTTCACGTTTCCCAAGGCAAACATT
* * *
553748 CAAATATAATCTGTTTTAACCAAAAATAT-AAAAAATTCAACTTAAAATC
65 CAAATATAAT-TATTTTAAACAAAAATGTAAAAAAATTCAACTTAAAATC
553797 NNNNNNNNNN
Statistics
Matches: 6399, Mismatches: 1355, Indels: 408
0.78 0.17 0.05
Matches are distributed among these distances:
332 7 0.00
333 252 0.04
334 7 0.00
335 1 0.00
336 3 0.00
337 263 0.04
338 156 0.02
339 199 0.03
340 622 0.10
341 1354 0.21
342 2213 0.35
343 988 0.15
344 326 0.05
345 8 0.00
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.35
Consensus pattern (341 bp):
GACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTCCCAAGGCAAACATTC
AAATATAATTATTTTAAACAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAA
ACCATTTAAAGCGAGTAATAAGGTTTTCGAAGGCTTGAGTGACTATAAATGGACTTTTCTTGCCA
ATGGATGGCTTTTGCTTCACGTTTCCTGAGGCAGACATTCAGTTATAATATATTTTAACCAAAAA
TATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGC
TTTCGAAGGCTTGAGT
Found at i:548409 original size:513 final size:510
Alignment explanation
Indices: 545498--553796 Score: 6365
Period size: 513 Copynumber: 16.2 Consensus size: 510
545488 GTCAATTCGA
** * * * * * *
545498 GACTATAAATTAACTTTTCTTATCAATGGATGGCTTTTTCATCACGTTTCTTGAGACAGACATTC
1 GACTATAAATGGACTTTT-TTGTCAATGGATGGCTTTTGCTTCACGTTTCCTAAGGCAGACATTC
* * * ** *
545563 AGTTATAATTTATTTTAAACAAAAATGTAAAAACACCCAACTTAAAATCAATTATGAGACTATAA
65 AGTTATAATATATTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAA
* * * * ** * * *
545628 AATAATTTAAATG-GAGTAATAAAGCTTTTGAAGGCTTGAGCCACTAGAAATGAACTTTTATTGT
130 AA-CATTTAAA-GCAAGTAATAAGGCTTTCGAAGGCTTGAGTGACTATAAATGAACTTTTCTTGC
* * * * ** * * *
545692 CAATAGATGGCTTGTCCTTCATGTTTCTCGAGGCAGACATTCAGTTATAATATATTTTAACTAAA
193 CAATGGATGGCTTTTGCTTCACGTTTCTTAAAGCAAACATTCAATTATAATATATTTTAA-TAAA
* * * * * *
545757 AATATAAAAAAATACAACTTAAAATCAATAATGAGAATAT-AAACCATTTACAGCGAATAATAAA
257 AATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAG
* * * * *
545821 GCTTTTGAAGGCTTGAGTAACTAGAAATGGACTTTCCTTGTCAATGGATGGCTTTTGCTTCATGT
322 GCTTTCGAAGGCTTGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTTCATGT
* * * * *
545886 TTTCCAAGGCAAACAATCAAATATAATCTATTTTAACAAAAAATGTAAAACAATTCAACTTAAAA
387 TTCCCAAGGTAAACATTCAAATATAATCTATTTTAACCAAAAATGTAAAAAAATTCAACTTAAAA
* * * * * **
545951 TCAATTATGTGAATATAAATCCATTTCAAGATAGTAATAA-GTTTTTTTAGCGCTTGAGT
452 TCAATTATGAGATTATAAAACCATTTAAAGATAGTAATAAGGCTTTTGAAG-GCTTGAGT
** * ** *
546010 GACTATAAATTAACTTTTCTCCCAAATGGATGGCTTTTGCTTCACATTT-CTCAAGGCCA-ACAT
1 GACTATAAATGGACTTTTTTGTC-AATGGATGGCTTTTGCTTCACGTTTCCT-AAGG-CAGACAT
* * * * * * *
546073 TTAGTTATAATATAGTTTAACAAAAAATGTAACAAAA-TGAACTTAAAATCAATAATGAGAATAT
63 TCAGTTATAATATATTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTAT
* * * *
546137 GAAACTATTTAAAGCGAA-TAATAAGGCTTTTGAAGGCTTGAGTGACTAGAACT-AGACTTTTCT
128 AAAAC-ATTTAAAGC-AAGTAATAAGGCTTTCGAAGGCTTGAGTGACTATAAATGA-ACTTTTCT
** * * * * * * * * * * *
546200 TATCTATAGATGACTTTTGCTTCACGTTTCTCAAGGTAAACAGTGAAATATAATCTTTTTTAATG
190 TGCCAATGGATGGCTTTTGCTTCACGTTTCTTAAAGCAAACATTCAATTATAATATATTTTAAT-
* * *
546265 AAAAATATAAAAAAA-TAAACTTAAAATTAATTATGCA-ATTATAAAACCATTTAAAGCTAGTAA
254 AAAAATATAAAAAAATTCAACTTAAAATCAATTATG-AGATTATAAAACCATTTAAAGCGAGTAA
* *** * ** *
546328 TAA-GTTTTTTTAGGACTT-AGTGACTATTAATCA-ACTTTTC-TCACAAATGGATGGCTTTTGT
318 TAAGGCTTTCGAAGG-CTTGAGTGACTATAAAT-AGACTTTTCTTGTC-AATGGATGGCTTTTGC
* ** * * * * * * *
546389 TTTATGTTTCCTGAGATAGACATTCGACTATAATATATTTTAACAAAAAATGTAAAAAAATTTAA
380 TTCATGTTTCCCAAGGTAAACATTCAAATATAATCTATTTTAACCAAAAATGTAAAAAAATTCAA
* ** * *
546454 CTTAAAATCAATTATGAGATTATAAAACCATTAAAAGCGAGTAATAAGGCTATCGAAGGCTTGAG
445 CTTAAAATCAATTATGAGATTATAAAACCATTTAAAGATAGTAATAAGGCTTTTGAAGGCTTGAG
*
546519 A
510 T
* * * * * **
546520 GACTATAAATGGACTTTTCTTATGAATGGATGGCTTTTACATCACGTTTCCCAAGGCAGGTATTC
1 GACTATAAATGGACTTTT-TTGTCAATGGATGGCTTTTGCTTCACGTTTCCTAAGGCAGACATT-
* * * * * *
546585 CA-TTTTAAT-TAATTTTAAACAACAATGTAAAAAAACTCTACTTAAAATCAATTATGAGACTAT
64 CAGTTATAATAT-ATTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTAT
* * * * * * *
546648 AAAATCTTTTAAAGCGAA-TAATAAGGTTTTGGAAGACTTGAGTGACTAGAAATGGACTTTTTTT
128 AAAA-CATTTAAAGC-AAGTAATAAGGCTTTCGAAGGCTTGAGTGACTATAAATGAACTTTTCTT
* * * * * * * *
546712 ACCAATGGATGGCTTTTGCTTTAGGTTTCCTGACGCAAACATTAAATTATAATATATTTTAACCA
191 GCCAATGGATGGCTTTTGCTTCACGTTTCTTAAAGCAAACATTCAATTATAATATATTTTAA-TA
* * * * * * * *
546777 AAAAAATAAAAAAATTTAACTTAAAACCAATAATTAGATTATAAAACTATTTAAAGTGAGTAATG
255 AAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATA
* ** *
546842 AGGCTTTCG-AGAGCTTAAGTGACTATAAATAGACTTTTCTTCCCAACGGATGGCTTTTGCTTCA
320 AGGCTTTCGAAG-GCTTGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTTCA
** ** ** * *
546906 CATTTCCCAAGACAAGTAGTT-AGATATAATCTATTTTAACCAAAAATGAAAAAAAAATTCAACT
384 TGTTTCCCAAGGTAAACA-TTCAAATATAATCTATTTTAACCAAAAATG-TAAAAAAATTCAACT
* * * * * *
546970 TAAAATCAATTATGCGATTACAAAATCATTTAAAGCA-AGTAATAA-GTTTTATTAAGGCTTAAG
447 TAAAATCAATTATGAGATTATAAAACCATTTAAAG-ATAGTAATAAGGCTTT-TGAAGGCTTGAG
*
547033 C
510 T
* ** * *
547034 GACTATAAATTGACTTTTTTCCCAAATAGATGGCTTTTGCTTCACGTTT-TTCAAGGCAGACATT
1 GACTATAAATGGACTTTTTTGTC-AATGGATGGCTTTTGCTTCACGTTTCCT-AAGGCAGACATT
* * * * * *
547098 CAGTTATAATATATTTTTATCAAAAAATGTAAAACAATTTAACTTAAAATCAATAATTAGATTAT
64 CAGTTATAATATA-TTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTAT
* * ** * * * *
547163 AAAACCATGTAAAGCGAGTAATAAGGCTTTTAAAGGATTTAGTGACTATAATTGGACTTTTCTTG
128 AAAA-CATTTAAAGCAAGTAATAAGGCTTTCGAAGGCTTGAGTGACTATAAATGAACTTTTCTTG
* ** ** * * * * * * *
547228 TCAATGGATGGCTTTTTTTTCACGTTT-TCCAAGCTAAATAGTCAAATATAATCTGTTATAACCA
192 CCAATGGATGGCTTTTGCTTCACGTTTCTTAAAGC-AAACATTCAATTATAATATATTTTAA-TA
* * * * * **
547292 AAAATGTAAAAAAAATTGAAGTTAAAATCAATTATGCGATTATAAAACTATTTAAAGATAGTAAT
255 AAAATAT-AAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAAT
** * * * * * * *
547357 AAGTTTTTTGAGGGCTTGAGTGACTATAAATCGACTTTT-TTCATAAATAGATGGCTTTTGCTTT
319 AAGGCTTTCGAAGGCTTGAGTGACTATAAATAGACTTTTCTT-GTCAATGGATGGCTTTTGCTTC
* *** * * ** * * *
547421 GTGTTTCATGAGGCAGACATTCAGTTATAA-CATATTTTAACCAAAAATATAAAAATATTCAATT
383 ATGTTTCCCAAGGTAAACATTCAAATATAATC-TATTTTAACCAAAAATGTAAAAAAATTCAACT
* * * * *
547485 TAAAATCAATAATTAGATTATAAAACCATTTAAAGCTAGTAATAAGGCTTTTGAAGGCGT-AGGA
447 TAAAATCAATTATGAGATTATAAAACCATTTAAAGATAGTAATAAGGCTTTTGAAGGCTTGA-GT
* * * * * ** ** * *
547549 GACTATAAATAGA-TATTTCTTGCCAACGGATTGCTTTTACTTCATATTTCCTAAGTTA-ATAGT
1 GACTATAAATGGACT-TTT-TTGTCAATGGATGGCTTTTGCTTCACGTTTCCTAAGGCAGACATT
** * * * * * *
547612 CAAATATAATATGTTTTAATCAAAAATATAAAAAAATTTAATTTAAAATCAATTATGCGATTATA
64 CAGTTATAATATATTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATA
* * * * * * *
547677 AAACTATTTAAAGCTAGTTATAA-G-TTTGCCTAGGGCTTGAATGACTATAATTCAACTTTTCTT
129 AAAC-ATTTAAAGCAAGTAATAAGGCTTT--CGAAGGCTTGAGTGACTATAAATGAACTTTTCTT
* * * * * * * * *
547740 GCAAATAGATAGCTTTTGCTTTACGTTT-TTCAAGGTAGATATTCAATTATAATATATTTAAATT
191 GCCAATGGATGGCTTTTGCTTCACGTTTCTT-AAAGCAAACATTCAATTATAATATATTTTAA-T
* * * * *
547804 AAAAATATAAAACATTTCACCTTAAAATCAATAATTAGATTATAAAACCATTTAAAGCGAGTAAT
254 AAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAAT
*
547869 AAGGCTTTCGAAGGCTTGAGTGACTATAAATAGACTTTTCTTGTCAACGGATGGCTTTTGCTTCA
319 AAGGCTTTCGAAGGCTTGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTTCA
* * * * * **
547934 TGTTTCCCAAAGTAAACAGTCAAATATAATCTGTTTTAACAAAAAATGTAAAAAAATTAAACTGG
384 TGTTTCCCAAGGTAAACATTCAAATATAATCTATTTTAACCAAAAATGTAAAAAAATTCAACTTA
* * ** *
547999 AAATCAATTATGTGATTATAAAACCACTTAAAGATAGTAATAAGTTTTTTGAAGGCTTTAGT
449 AAATCAATTATGAGATTATAAAACCATTTAAAGATAGTAATAAGGCTTTTGAAGGCTTGAGT
* * * * * *
548061 GACTATAAATTGG-CTTTTGTATAAATGGATAGG-TTTTGCTTCATGTTTCCTGAGGCAGAGATT
1 GACTATAAA-TGGACTTTTTTGTCAATGGAT-GGCTTTTGCTTCACGTTTCCTAAGGCAGACATT
*
548124 CAGTTATAATATATTTTAACCAAAAATATAAAAAAACTTCAACTTAAAATCAATTATGAGATTAT
64 CAGTTATAATATATTTTAACCAAAAATGTAAAAAAA-TTCAACTTAAAATCAATTATGAGATTAT
* * * ** * *
548189 AAAACTTTTGAAAGCAAGTAATAAGGCTATCGAAGGCTTGGGAAACTATAAATGAATTTTTCTTA
128 AAAACATTT-AAAGCAAGTAATAAGGCTTTCGAAGGCTTGAGTGACTATAAATGAACTTTTCTTG
** * * * * * *
548254 TAAATGGATAGCTTTTGCTTCATGTTTCTTAAAGCAAAAATTTAGTTATAATTTATTTTTTAA-A
192 CCAATGGATGGCTTTTGCTTCACGTTTCTTAAAGCAAACATTCAATTATAA--TATATTTTAATA
* * * *
548318 AAAATGTAAAAAAATTCAACTTAAAAGCAACTATGAGATTATAAAATCATTTAAAGCGAGTAATA
255 AAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATA
* * * *
548383 AGGCTATCGAAGGCTTGAGAGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCAC
320 AGGCTTTCGAAGGCTTGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTTCAT
** * ** *
548448 GTTTCCTGAGGTAGACATTCACTTATAATATATTTTCAACCAAAAATGTAAAAAAATTCAACTTA
385 GTTTCCCAAGGTAAACATTCAAATATAATCTATTTT-AACCAAAAATGTAAAAAAATTCAACTTA
* * * *
548513 AAATCAATTATAAGATTATAAAACCATTTAAACCGA-A-TAATAAGGCTATCGAAGGCTTGAGA
449 AAATCAATTATGAGATTATAAAACCATTTAAA--GATAGTAATAAGGCTTTTGAAGGCTTGAGT
* * *
548575 GACTATAAATCGACTTTTTTTGTCAATGGATGGCTTTTGCTTCACGTTT-CTAGAGGTAGACTTT
1 GACTATAAATGGAC-TTTTTTGTCAATGGATGGCTTTTGCTTCACGTTTCCTA-AGGCAGACATT
** * * * * * *
548639 TGGTTATAATTTGTTTTAA--AAAAATATAAAAAAGCTT-AACTTAAAATAAATTATGAGACTAT
64 CAGTTATAATATATTTTAACCAAAAATGTAAAAAA-ATTCAACTTAAAATCAATTATGAGATTAT
* ** * ** * *
548701 AAAACTATTTAAAG-AGAATAATAAGGCTTTTAAAAGCTTGAGCAACTAAAAATGGACTTTTCTT
128 AAAAC-ATTTAAAGCA-AGTAATAAGGCTTTCGAAGGCTTGAGTGACTATAAATGAACTTTTCTT
* ** * ** * * *
548765 GTCAATTAATAGCTTTTGCTTCACGTTTC-CCAAGAAAAACATTCAGTTATAATATATTTTAAGC
191 GCCAATGGATGGCTTTTGCTTCACGTTTCTTAAAG-CAAACATTCAATTATAATATATTTTAA-T
* * * * * *
548829 AAAAATGTAGAAAAATTTAACTTAAAATCAATTATGA-AGTTATCAAACCACTTAAAGCAAGTAA
254 AAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGA-TTATAAAACCATTTAAAGCGAGTAA
* ** * * * ** *
548893 TAAGGCTTTCGAAAGAATGTGTGACTATAAATAGGCATTTCTTGTCAATAAATGGCTTTTTCTTC
318 TAAGGCTTTCGAAGGCTTGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTTC
* * * * * * * *
548958 ACT-TTTCTCGAGGCAAACATTCAAATATGATCTATTTTGATCAAAAATATAAAAAAAATCAACT
383 A-TGTTTCCCAAGGTAAACATTCAAATATAATCTATTTTAACCAAAAATGTAAAAAAATTCAACT
* * * ** * *
549022 TAAAATCAGTAATGAGATTATAAAACCATTTCAAGCGAGTAATAAGGC-TTT---CG-TTGAAT
447 TAAAATCAATTATGAGATTATAAAACCATTTAAAGATAGTAATAAGGCTTTTGAAGGCTTGAGT
* * * * * *
549081 GACTATAAATGGACTTTTCTTGTTAATGGATGGTTTTTGCTTCATGTCT-CTCGAGGTAGACATT
1 GACTATAAATGGACTTTT-TTGTCAATGGATGGCTTTTGCTTCACGTTTCCT-AAGGCAGACATT
* * * ** * *
549145 TAGTTATAATTTAATTTAACCTCAAATGTGAAAAGATTCAACTTAAAATCAATTATGAG-TCTAT
64 CAGTTATAATATATTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGAT-TAT
** ** * *
549209 AAAACCATTTAAAGTGAGTAAGT-AGGCTTTTAAAGTCTTGAGCGACTATAAAT-AGACTTTTCT
128 AAAA-CATTTAAAGCAAGTAA-TAAGGCTTTCGAAGGCTTGAGTGACTATAAATGA-ACTTTTCT
* * * * * * * *
549272 TGCCAATAGATGGCTTTCGCTTCACGTTTCCCT-ATGTAGACAATCAATTATAATATATTTTTAT
190 TGCCAATGGATGGCTTTTGCTTCACGTTT-CTTAAAGCAAACATTCAATTATAATATATTTTAAT
* * * * * * * **
549336 CAAAAATACAAAAATATTTAACTTAAAATAAATTATAAGATTATAAAACTATTTAGATAGAGTAA
254 -AAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAA
* *
549401 TAAGGCTTTCGAAGGCTTTAGTGACTATAAATAGACTTTTCTTG-CAAATGGATCGCTTTTGCTT
318 TAAGGCTTTCGAAGGCTTGAGTGACTATAAATAGACTTTTCTTGTC-AATGGATGGCTTTTGCTT
* * * * ** * * * *
549465 CATATTT-TCGAGGTAAATATTCAGTTATAATATGTTTTAACTAAAAATGTAAAAAAATTCAATT
382 CATGTTTCCCAAGGTAAACATTCAAATATAATCTATTTTAACCAAAAATGTAAAAAAATTCAACT
* ** * ** * *
549529 TAAAATCAATCATGAGATTATAAAACC-TTTCAAAGGGAGCAATAAATCTTTTAAAGGCTTGAAT
447 TAAAATCAATTATGAGATTATAAAACCATTT-AAAGATAGTAATAAGGCTTTTGAAGGCTTGAGT
* * ** * * *
549593 GACTATAAATAGACTTTTCTTGTCAATGGATGCCTTTTGCTTCACGTCCCCCAAAGCAAACATTC
1 GACTATAAATGGACTTTT-TTGTCAATGGATGGCTTTTGCTTCACGTTTCCTAAGGCAGACATTC
** * *
549658 AGTTATAAT-TAATTTTAATAAAAAATGTAAAAAATTTTAACTTAAAATCAATTATGAGATTATA
65 AGTTATAATAT-ATTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATA
* * * *
549722 AAACCATTTAAAG-AGAGCAATAAAGCTTTC-AATTGCTTGAGTGACTATAAATGGACTTTTCTT
129 AAA-CATTTAAAGCA-AGTAATAAGGCTTTCGAA-GGCTTGAGTGACTATAAATGAACTTTTCTT
* ** * * *
549785 ACCAATGGATGG-TTTTCGCTTCATATTTCCTGAAGCAGACATTCAATTATAATATATTTTAATT
191 GCCAATGGATGGCTTTT-GCTTCACGTTTCTTAAAGCAAACATTCAATTATAATATATTTTAA-T
* * ** * * * * **
549849 AAAAATATAAACAAATTTAGTTTAGAATCAATTATGAGGTTATCAAACCACTTAAAGTAAGTAAT
254 AAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAAT
**** * * ** * * **
549914 AAGGCTTTCGAAATAATGGGTGACTATAAATAGATTTTTCTTGTGGATGAACGGCTTTTTTTTTC
319 AAGGCTTTCGAAGGCTTGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGC-TTTTGCTTC
* * * * * * * * *
549979 ATATTTTCCAAGGTAGACATTGAAATATAATCTGTTTTAATCAAAAATTTTAAAAAATTTAACTT
383 ATGTTTCCCAAGGTAAACATTCAAATATAATCTATTTTAACCAAAAATGTAAAAAAATTCAACTT
* * * * * * * *
550044 AAAATTAGTAATCAAATTATAAAACCATTTAAAG-TGAGTAATAAAGCTTTCGACA-GTTTGAGT
448 AAAATCAATTATGAGATTATAAAACCATTTAAAGAT-AGTAATAAGGCTTTTGA-AGGCTTGAGT
* * * *
550107 GACTATAAATGGACTTTTTTTATCAATAGATGGCTTTTGCTTCACTTTTCAC-AAGGCAAACATT
1 GACTATAAATGGAC-TTTTTTGTCAATGGATGGCTTTTGCTTCACGTTTC-CTAAGGCAGACATT
* * ** *
550171 CAGTTATAGTATATTTTAACTAAAACGGTAAAAAAGTTCAACTTAAAATCAATTATGAGATTATA
64 CAGTTATAATATATTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATA
* * *
550236 AAACCATTTAAAGCAAGTAATAAGTCTTTTGAAGGCTTGAGTGACTATAAAT-AGACTTTTCTTA
129 AAA-CATTTAAAGCAAGTAATAAGGCTTTCGAAGGCTTGAGTGACTATAAATGA-ACTTTTCTTG
* * * * * * * *
550300 TCAATGAATGGGC-TTTGCTTCACATTTCAT-GAGACAGACATTTAGTTATAATATATTTTAACT
192 CCAATGGAT-GGCTTTTGCTTCACGTTTCTTAAAG-CAAACATTCAATTATAATATATTTTAA-T
* ** * *
550363 AAAAATGTAAAAAGGTTTAACTTAAAATCAATTATGAGATTATAAAACCATTT-AA-C------C
254 AAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAAT
* * * * * * **
550420 AA-GCTTTCAAAGGCTAGAGTAACTATAAGTGGACTTTTCTTGTCAAT-AAGTAACTTTTGCTTC
319 AAGGCTTTCGAAGGCTTGAGTGACTATAAATAGACTTTTCTTGTCAATGGA-TGGCTTTTGCTTC
* * * * * * * * * *
550483 ACGTTTCCTAAGGTAGACATTCCAGTATAATCTATTTTAATCAAATATTTAGAAAAATTCAACTA
383 ATGTTTCCCAAGGTAAACATTCAAATATAATCTATTTTAACCAAAAATGTAAAAAAATTCAACTT
* * * * ** * *
550548 AAAATGAATAATGAGATTATAAAAGCATTTAAA-CTGAGTAATAAGGCTTTCCAAGACTTGAGA
448 AAAATCAATTATGAGATTATAAAACCATTTAAAGAT-AGTAATAAGGCTTTTGAAGGCTTGAGT
* * * * * * * * *
550611 AACTGTGAATGGACTTTTCTTGCCAATAGATGGCTTTTGCTCCATGTTT-CTCAAAGCAAACATT
1 GACTATAAATGGACTTTT-TTGTCAATGGATGGCTTTTGCTTCACGTTTCCT-AAGGCAGACATT
* * * ** * *
550675 CAATTATAATATATTTTAACTAAAAATGCAAAAACTTTCAACTTAAAATTAATTATGAGGTTATC
64 CAGTTATAATATATTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTAT-
* * **** * * **
550740 AAACCATTTAAAGCAAGTAATAAGGCTTCCGAAAAAATAAGTGACTATAAAT-AGATTTTTCTCA
128 AAAACATTTAAAGCAAGTAATAAGGCTTTCGAAGGCTTGAGTGACTATAAATGA-ACTTTTCTTG
* * * ** * * * *
550804 CCAATGAATGGCTTTTTCTTCACGTTTCTCAGGGTATACATTCAAATATAATCTATTTTAACTAA
192 CCAATGGATGGCTTTTGCTTCACGTTTCTTAAAGCAAACATTCAATTATAATATATTTTAA-TAA
* * * * * *
550869 AAATATAAAACAATTCAACTTAAAATCAGTAATGACATTATAAAATCATTTAAAGCAAGTAATAA
256 AAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAA
* * * * *
550934 GGCTTTCTAAGGCTTAAGTGAGTATAAAT-GAACTTTTTTTG-CAAATGGATGGCTTTTGCCTCA
321 GGCTTTCGAAGGCTTGAGTGACTATAAATAG-ACTTTTCTTGTC-AATGGATGGCTTTTGCTTCA
* * * * * * * ** * **
550997 CGTTTCTCAAGGCATACACTCAAAAAGAAAT-TATTTTAATGAAAAATATAAATCAA-TCTAACT
384 TGTTTCCCAAGGTAAACATTCAAATA-TAATCTATTTTAACCAAAAATGTAAAAAAATTC-AACT
* * ** * ** * *
551060 TAAAATCAATGATGAGATCATAAAAGAATTTAAAGCA-AGTAATAAAGCTTTCAAAAGCTTGAGC
447 TAAAATCAATTATGAGATTATAAAACCATTTAAAG-ATAGTAATAAGGCTTTTGAAGGCTTGAGT
* * * *
551124 GACTAGAAATGGACTTTTCTTGTCAATAGAGGGCTTTTGCTTCACGTTTGAC-AAGGCAGACATT
1 GACTATAAATGGACTTTT-TTGTCAATGGATGGCTTTTGCTTCACGTTT-CCTAAGGCAGACATT
** * * * *
551188 CAAATATAATATGTTTTAATCAAAAAAGTAAAACAATTCAACTTAAAATCAATTATGAGATTATA
64 CAGTTATAATATATTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATA
** * * * *
551253 AAACCATTTAAAGTGAGCAATAAGGCTTGC-AACGACTTGAGTGGCTATAAAT-AGACTTTTCTT
129 AAA-CATTTAAAGCAAGTAATAAGGCTTTCGAA-GGCTTGAGTGACTATAAATGA-ACTTTTCTT
* * * * * * * * *
551316 ACAAATGGATGACTTTTGCTTCACGTTTCCT-AAGACAAACAATCAAATATAATTTGTTTCAATA
191 GCCAATGGATGGCTTTTGCTTCACGTTTCTTAAAG-CAAACATTCAATTATAATATATTTTAAT-
* * * *
551380 AAAAATATAAAAAAATTCAACTTAAAATCAGTTATGAGATTATAAAATCATTTAAAGCTATTAAT
254 AAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAAT
** ** * * *
551445 AAGTTTTTTAAAGGGTTGAGTGACTATAAAT-GTCTTTTCTAG-CAAATGGATGGCTTTTGCTTC
319 AAGGCTTTCGAAGGCTTGAGTGACTATAAATAGACTTTTCTTGTC-AATGGATGGCTTTTGCTTC
* *** ** * * * *
551508 ACG-TTCTTGAGGTAAACATTCAGTTATAATATATTTTAACTAAAAATATAAAAATATTCAACTT
383 ATGTTTCCCAAGGTAAACATTCAAATATAATCTATTTTAACCAAAAATGTAAAAAAATTCAACTT
* * * ** *
551572 AAAATTAATTATGAGATTATAAAACCATTTAAAGGTAGCAATAAGGCTTACGAAGGCTTAAGT
448 AAAATCAATTATGAGATTATAAAACCATTTAAAGATAGTAATAAGGCTTTTGAAGGCTTGAGT
* * * * *
551635 GACTATAAATGGACTTTTCTTGCCAATGGATGGCTTTTGCTTCACATTTCTTGAGG-TGCACATT
1 GACTATAAATGGACTTTT-TTGTCAATGGATGGCTTTTGCTTCACGTTTCCTAAGGCAG-ACATT
** * * ** * *
551699 CAAATATAATCTGTTTTAATAAAAAATGTTAAAAAA-TCTAACTTAAAATCTATTATGAGATTAT
64 CAGTTATAATATATTTTAACCAAAAATGTAAAAAAATTC-AACTTAAAATCAATTATGAGATTAT
* ** * * * * *
551763 AAAACAATTTCAAGGGAGAAATAAGTCTTTCAAAGGCTTGAGTGACTATAAATGGATTTTTCTTG
128 AAAAC-ATTTAAAGCAAGTAATAAGGCTTTCGAAGGCTTGAGTGACTATAAATGAACTTTTCTTG
* * * * * *
551828 CCAATGGAGGGC-TTTGACTTCACGTTTCTTAAGGCCAACATTCAAATATAATCTGTTTTAACTA
192 CCAATGGATGGCTTTTG-CTTCACGTTTCTTAAAGCAAACATTCAATTATAATATATTTTAA-TA
* * *
551892 AAAATATAAAACAATTCAACTTAAAATCAATTACGAGATTATAAAACCATTTAAAGTGAGTAATA
255 AAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATA
* * * * ** *
551957 AGGCTTT-TAACGGCTTTAGTGACTGTAAATGGACTTTTCTTACCAATGAATGGCTTTTTGCTTC
320 AGGCTTTCGAA-GGCTTGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGC-TTTTGCTTC
* ** * * * * *
552021 ACGTTTCCTGAGGCAAACATTCAAATGTAATTTATTTTAACTAAAAATGTAAAAATATTCAACTT
383 ATGTTTCCCAAGGTAAACATTCAAATATAATCTATTTTAACCAAAAATGTAAAAAAATTCAACTT
* *
552086 AAAATCAATAATGAGATTATAAAACCATTTAAAG-TAAGTAATAAGG-TTATTGAAAGCTTGAGT
448 AAAATCAATTATGAGATTATAAAACCATTTAAAGAT-AGTAATAAGGCTT-TTGAAGGCTTGAGT
* * * * * **
552149 GACTATAAATGGACTTTTCTTGTCAATGAATAGG-TTTTGTTTCACATTTCTTGAGG-TTA-A-T
1 GACTATAAATGGACTTTT-TTGTCAATGGAT-GGCTTTTGCTTCACGTTTCCTAAGGCAGACATT
* * *
552210 -AGTTATAATTTATTTTAA-CAAAAAGTGTAAAAAAATTAAACTTAAAATCAATTATGAGATTAG
64 CAGTTATAATATATTTTAACCAAAAA-TGTAAAAAAATTCAACTTAAAATCAATTATGAGATTAT
** * * * * * * *
552273 AAAACCATTTAAAAAAAGTAATAATGCTTTCGAAAGCTTGAGTGGCTACAAATGGACATTTCCTG
128 AAAA-CATTTAAAGCAAGTAATAAGGCTTTCGAAGGCTTGAGTGACTATAAATGAACTTTTCTTG
* * ** * * *
552338 CCAATGGATGTCTTTTGCATT-ACATTTC-TCGAGACAGACATTTAATTATAATTTATTTTAATT
192 CCAATGGATGGCTTTTGC-TTCACGTTTCTTAAAG-CAAACATTCAATTATAATATATTTTAA-T
* * * *
552401 AAAAATGTAAAAAAAATCAACATAAAATCAATTATGAGATTATTAAACCATTTAAAGCGAGTAAT
254 AAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAAT
* * ***
552466 ACGGCTTTC-AATGGCTTGAGTAACTATAAATAGACTTTT-TT-TACTAATGGATAATTTTTGCT
319 AAGGCTTTCGAA-GGCTTGAGTGACTATAAATAGACTTTTCTTGT-C-AATGGATGGCTTTTGCT
* * * * * * * *
552528 TCACGTTTCCTAAAGCAGACATTCAAATATAATCTATTTTAACAAAAAAATGT-AAAACATTGAA
381 TCATGTTTCCCAAGGTAAACATTCAAATATAATCTATTTTAAC-CAAAAATGTAAAAAAATTCAA
* * * * * ** * * *
552592 CCTAAAATTAATAATAAGATTATAAAACCATTTAATGCGACTAATAAAG-TTATCGAAGGCTTGA
445 CTTAAAATCAATTATGAGATTATAAAACCATTTAAAGATAGTAATAAGGCTT-TTGAAGGCTTGA
552656 GT
509 GT
* * *
552658 GACTATAAATGGACTTTTCTTGTCAATGGATGACTTTTGCTTCACTTTTCC-AGAGGCAGATATT
1 GACTATAAATGGACTTTT-TTGTCAATGGATGGCTTTTGCTTCACGTTTCCTA-AGGCAGACATT
* * * * * * * *
552722 CAATTATAATTTATTTTAACCAAACATATAATACAATTCAACTTAAAATGAATTATGAGACTATA
64 CAGTTATAATATATTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATA
* * **
552787 AAACTATTTAAAGCGAGTAATAAGGC-TTCGAAGGCTTGAGTGATTGGAAATGAACTTTTCTTGC
129 AAAC-ATTTAAAGCAAGTAATAAGGCTTTCGAAGGCTTGAGTGACTATAAATGAACTTTTCTTGC
* * *** * * * * *
552851 CAATAGATGGCTTTTTCTTTGTGTTTCACT-AGGCAAACATTTAGTTTTAATATAATTTTAATCA
193 CAATGGATGGCTTTTGCTTCACGTTTC-TTAAAGCAAACATTCAATTATAATAT-ATTTTAAT-A
* * * * *
552915 AAAATAGAAAAAAGCTT-AACTTAAAATCAATTATGAGATTATAAAATCATTTAAAGTGAGCAAT
255 AAAATATAAAAAA-ATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAAT
* ** * * * ** * * * *
552979 AAGGCTTTCAAACTCTTGAGTGAATATAAATGGACCTTTCTTACCAATGGGTAGCTTTCGCTTTA
319 AAGGCTTTCGAAGGCTTGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTTCA
** * * * *
553044 TGTTTCTTGAA-GCAAACAATCAAATATAATCT-TCTTTAACCAACAATGTAAAAAAATTTAACT
384 TGTTTC-CCAAGGTAAACATTCAAATATAATCTAT-TTTAACCAAAAATGTAAAAAAATTCAACT
* * * * * *
553107 TAAAATCAATTAAGAGATTATAATACCATTTAAAGCTGGTAATAA-GTTTTCTGAAGGCTAGAGT
447 TAAAATCAATTATGAGATTATAAAACCATTTAAAGATAGTAATAAGGCTTT-TGAAGGCTTGAGT
* *** * * *
553171 GATTATAAATGGACTTTTCCCTCAAATGGATAGCTTTTGCTTCACGTATCCTAAGGCAGACGTTC
1 GACTATAAATGGACTTTTTTGTC-AATGGATGGCTTTTGCTTCACGTTTCCTAAGGCAGACATTC
* * * *
553236 TGTTATAATATATTTTAACC-AAAATGTAAAAAAATATTTAACTTAAAATCAAGTATGTGATTGC
65 AGTTATAATATATTTTAACCAAAAATGT-AAAAAA-ATTCAACTTAAAATCAATTATGAGATT--
* * * * ** * *
553300 GT-AATCATTTAAAGGAAGTGATAAGGCTTTTAAAGGCTTAAGT-ACTATAAATGGACTTTTCTT
126 ATAAAACATTTAAAGCAAGTAATAAGGCTTTCGAAGGCTTGAGTGACTATAAATGAACTTTTCTT
* * * ** * * * *
553363 GCCAATGGATAGCTTTTACTTTACGTTTCCCAAGGTAACCATTCAGTTATAATATATTTTAATCA
191 GCCAATGGATGGCTTTTGCTTCACGTTTCTTAAAGCAAACATTCAATTATAATATATTTTAAT-A
* * * * *
553428 AAAATACAAAAAAATTCAACTTCAAATCAATAATGAGATTATAAAACAATTTGAAGCGAGTAATA
255 AAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATA
* * * * *
553493 AGGCTTTCGAAGGCTTGAGCGACTACAAATGGACTTTTCTTG-CTAATGGATAGATTTTGCTTCA
320 AGGCTTTCGAAGGCTTGAGTGACTATAAATAGACTTTTCTTGTC-AATGGATGGCTTTTGCTTCA
* * * * * * * *
553557 TGTTTACTAAGGTAAATAGTCAAATACAATCTGTTTTAACCAAAAATATAAAAAAATTTAACTTA
384 TGTTTCCCAAGGTAAACATTCAAATATAATCTATTTTAACCAAAAATGTAAAAAAATTCAACTTA
* * * * * ** *
553622 AAATCAATTATGAGGTTATCAAACCACTTAAAGCA-AGTAATAAGGCTTTCGAAAGAATGGGT
449 AAATCAATTATGAGATTATAAAACCATTTAAAG-ATAGTAATAAGGCTTTTGAAGGCTTGAGT
** * * * * *
553684 GACTATAAATAAACTTTTCTTGTCAATGAAT-GATTTTCTCTTCACTTTTTCC-AAAGCAGACAT
1 GACTATAAATGGACTTTT-TTGTCAATGGATGGCTTTT-GCTTCAC-GTTTCCTAAGGCAGACAT
** * * *
553747 TCAAATATAATCTGTTTTAACCAAAAATAT-AAAAAATTCAACTTAAAATC
63 TCAGTTATAATATATTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATC
553797 NNNNNNNNNN
Statistics
Matches: 6232, Mismatches: 1319, Indels: 473
0.78 0.16 0.06
Matches are distributed among these distances:
502 1 0.00
503 8 0.00
504 351 0.06
505 44 0.01
506 77 0.01
507 86 0.01
508 236 0.04
509 179 0.03
510 494 0.08
511 807 0.13
512 1073 0.17
513 1543 0.25
514 856 0.14
515 337 0.05
516 139 0.02
517 1 0.00
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.35
Consensus pattern (510 bp):
GACTATAAATGGACTTTTTTGTCAATGGATGGCTTTTGCTTCACGTTTCCTAAGGCAGACATTCA
GTTATAATATATTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAA
ACATTTAAAGCAAGTAATAAGGCTTTCGAAGGCTTGAGTGACTATAAATGAACTTTTCTTGCCAA
TGGATGGCTTTTGCTTCACGTTTCTTAAAGCAAACATTCAATTATAATATATTTTAATAAAAATA
TAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTT
TCGAAGGCTTGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCC
CAAGGTAAACATTCAAATATAATCTATTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAA
TTATGAGATTATAAAACCATTTAAAGATAGTAATAAGGCTTTTGAAGGCTTGAGT
Found at i:558216 original size:171 final size:169
Alignment explanation
Indices: 557926--559230 Score: 1073
Period size: 171 Copynumber: 7.6 Consensus size: 169
557916 NNNNNNNNNN
* * * * *
557926 GAGGTAAACATTCAATTATAATATATTTTAA-TATAAAATGTAAAACAAGTCAACTTAAAATTAA
1 GAGGCAAACATTCAATTATAATATATTTTAACCA-AAAATG-AAAAAAATTCAACTTAAAATCAA
* ** * * * *
557990 TTATGAGACTATAAAAGTATTGAAAGCGAGTAATAAGGCTTTCGCAGGCTTGAGTGACTAGAAAT
64 TTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCTTGAGTGACTATAAAT
* * ** *
558055 GAACTTTTCTTGCTAATAGATCTCTTTTGCTTCATGTTTCATT
129 GGACTTTTCTT-CTAACAGATGGCTTTTGCTTCACGTTTC-TT
* * * * * ** **
558098 -AGGTAAACATTTAGTTATAATATACTTTAATCAAAAATGACAAAACGTTCAACAAAAAATCAAT
1 GAGGCAAACATTCAATTATAATATATTTTAACCAAAAATGA-AAAAAATTCAACTTAAAATCAAT
* * * * * * *
558162 TATGAGATTATATAACCATTTAAAGCAAGTAATACGGCTTTCGAAAGTTTGAGTGACTATGAATG
65 TATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCTTGAGTGACTATAAATG
* * **
558227 GGCTTTTCTTATCAACAGATGGCTTTTGCTTCACGTTTCCC
130 GACTTTTCTTCT-AACAGATGGCTTTTGCTTCACGTTTCTT
* * * * * * * * *
558268 AAGGTAAATAATCAAATATAATCT-TTTTGAACCATAAATGCAAAAAAATGCAATTTAAAATCAA
1 GAGGCAAACATTCAATTATAATATATTTT-AACCAAAAATG-AAAAAAATTCAACTTAAAATCAA
* * ** * *
558332 TTATGTGATTATAAAACCATTTAAAGCTAGTAATAAGTTTTTTGAGGGCTTGAGTGACAATAAAT
64 TTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCTTGAGTGACTATAAAT
* * * * *
558397 TGACTTTTCCTATAA-ATGGATGGCTTTTGCTTCATGTTTCCT
129 GGACTTTTCTTCTAACA--GATGGCTTTTGCTTCACGTTTCTT
* * * * *
558439 GAGGCAGACATTTAATTATAATATATTTTAACTAAAAATTATAAAAAAATTTAACTTAAAATCAA
1 GAGGCAAACATTCAATTATAATATATTTTAACCAAAAA-T-GAAAAAAATTCAACTTAAAATCAA
* * * * * * *
558504 TAATTAGATAATAAAATCATTTAAAGCGAGTAATACGGCTTTCGAAGGCTTGAGTTACTATAAAT
64 TTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCTTGAGTGACTATAAAT
* * *
558569 GGACTTTTCTTACCAACAGATAGCTTTTACTTCACGTTTCTT
129 GGACTTTTCTT-CTAACAGATGGCTTTTGCTTCACGTTTCTT
* * * *
558611 GAGGCAAACAATC-ATATATAATCTGTTTTAACCATAAATATAAAAAAAATTCAACTTAAAATCA
1 GAGGCAAACATTCAAT-TATAATATATTTTAACCA-AAA-ATGAAAAAAATTCAACTTAAAATCA
* * * * * * * *
558675 ACTATGAGATTGTAAAGCCGTTTAAAGCTAGTAATAAGGTTTTTTAGGGCTTGAGTGACTATAAA
63 ATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCTTGAGTGACTATAAA
* *
558740 TTGACTTTT-TTCGTAA-ATGAATGGCTTTTGCTTCATGTTT-TT
128 TGGACTTTTCTTC-TAACA-G-ATGGCTTTTGCTTCACGTTTCTT
* * * * *
558782 CGAGGTAAACATTTAGTTATAATATATTTTAACCAAAAATTGTAAAAGAATTTAACTTAAAATCA
1 -GAGGCAAACATTCAATTATAATATATTTTAACCAAAAA-TG-AAAAAAATTCAACTTAAAATCA
* * * * ** * *
558847 ATAATTAGATTAAAAAACTATTTAAAGTAAGTAATAAGGCTTTTGAAAGCTTGGGTGACTATAAA
63 ATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCTTGAGTGACTATAAA
* * *
558912 TGGACTTTTATTGCCAACGGATGGCTTTTGCTTCACGTTTCTT
128 TGGACTTTTCTT-CTAACAGATGGCTTTTGCTTCACGTTTCTT
* * * * * * * *
558955 GAGGCAAACAGTCAAATATAATTTGTTTTAACCATAAATGTAAAACAATTCAACTTAAAATTAAC
1 GAGGCAAACATTCAATTATAATATATTTTAACCAAAAATG-AAAAAAATTCAACTTAAAATCAAT
* * * * * ** * * *
559020 TATGCGATTGTAAAACTATTTAAATCTAGTAATAAGTTTTTTGAGGGTTTGAGTGACTATAAATC
65 TATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCTTGAGTGACTATAAATG
* * * * *
559085 AAATTTTC-TCGAAAATGAATGGCTTTTGCTTCAAGTTT-TT
130 GACTTTTCTTCTAACA-G-ATGGCTTTTGCTTCACGTTTCTT
* * * * * * *
559125 CGAGACAAACATTTAGTTATAATATATTTTAATCAAAAATGTAAAAAAGTTCAGCTTGAAATCAA
1 -GAGGCAAACATTCAATTATAATATATTTTAACCAAAAATG-AAAAAAATTCAACTTAAAATCAA
* * *
559190 TTATGATATTATAAAATCATTTAAAACGAGTAATAAGGCTT
64 TTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTT
559231 NNNNNNNNNN
Statistics
Matches: 890, Mismatches: 213, Indels: 61
0.76 0.18 0.05
Matches are distributed among these distances:
169 4 0.00
170 14 0.02
171 473 0.53
172 382 0.43
173 14 0.02
174 3 0.00
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.35
Consensus pattern (169 bp):
GAGGCAAACATTCAATTATAATATATTTTAACCAAAAATGAAAAAAATTCAACTTAAAATCAATT
ATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCTTGAGTGACTATAAATGG
ACTTTTCTTCTAACAGATGGCTTTTGCTTCACGTTTCTT
Found at i:559748 original size:172 final size:169
Alignment explanation
Indices: 559440--559881 Score: 478
Period size: 171 Copynumber: 2.6 Consensus size: 169
559430 TTGCTTCTCA
* * * * * *
559440 TTTCTTGAGGCAGACATTCAGTTATAATATATTTTAACCAAAACGTAAAAACATTCTATTTAAAA
1 TTTCTCGAGGCAGACATTCAGTTATAATATATTTAAACAAAAATGTAAAAA-ATTCAACTTAAAA
* * *
559505 TCAATTATGAGATTATAAAATCATTTAAAGCGAGAAATAAGACTATCGAAAGCATGAGAAACTAT
65 TCAATTATGAGATTATAAAACCATTTAAAGTGAGAAATAAGACTATCGAAAGCATGAGAAACTAG
* * ** * *
559570 AAATGGACTTTTTTTTGTTAAT-GAATAGCTTTCGTTTTATG
130 AAATGGAC-CTTTCTTGCAAATAG-ATAGCTTTCGCTTCATG
559611 TTTCTCGAGGCAGACATTCAGTTATAAT-TAAGTTTAAACAAAAATGTGAAAAAATTCAACTTAA
1 TTTCTCGAGGCAGACATTCAGTTATAATAT-A-TTTAAACAAAAATGT-AAAAAATTCAACTTAA
* * * * * * * *
559675 AATTAATTATGAGACTATAAAACCATTTAAAGTGGGTAATAAGGCTTTC-AAAGGCTTGAGCAAC
63 AATCAATTATGAGATTATAAAACCATTTAAAGTGAGAAATAAGACTATCGAAA-GCATGAGAAAC
* *
559739 TAGAAATGGACCTTTCTTGCAAATAGATGGCTTTTGCTTCATG
127 TAGAAATGGACCTTTCTTGCAAATAGATAGCTTTCGCTTCATG
* * ** * * *
559782 TTTCACAAGGC-GAACATTTTGTTATAATATATTTTAATCAAAAATATAAAAAAGTTCAACTTGA
1 TTTCTCGAGGCAG-ACATTCAGTTATAATATA-TTTAAACAAAAATGTAAAAAA-TTCAACTTAA
559846 AATCAATTATGAGATTATAAAACCATTTAAAGTGAG
63 AATCAATTATGAGATTATAAAACCATTTAAAGTGAG
559882 NNNNNNNNNN
Statistics
Matches: 227, Mismatches: 36, Indels: 16
0.81 0.13 0.06
Matches are distributed among these distances:
170 8 0.04
171 131 0.58
172 83 0.37
173 5 0.02
ACGTcount: A:0.40, C:0.12, G:0.14, T:0.34
Consensus pattern (169 bp):
TTTCTCGAGGCAGACATTCAGTTATAATATATTTAAACAAAAATGTAAAAAATTCAACTTAAAAT
CAATTATGAGATTATAAAACCATTTAAAGTGAGAAATAAGACTATCGAAAGCATGAGAAACTAGA
AATGGACCTTTCTTGCAAATAGATAGCTTTCGCTTCATG
Found at i:560539 original size:171 final size:170
Alignment explanation
Indices: 560051--561213 Score: 979
Period size: 171 Copynumber: 6.8 Consensus size: 170
560041 NNNNNNNNNC
* * * ** * * *
560051 GGATGGCTTGTGCTTCACGTTTTTCAATACAAATAGTCAAATATAATCTGTTTTAACCAAAACA-
1 GGATGGCTTTTGCTTGACG-TTTCCAAGGCAAACATTCAAATATAATCTATTTTAACCAAAA-AT
* * * * * *
560115 GTAAAACAATTTAACTTAAAATCAATTAT-ATGATTATAAAACCATTCAAAGTTAGTAATAAGTT
64 GTAAAAAAATTCAACTTAAAATCAATAATGA-GATTATAAAACCATTTAAAGCTAGTAATAAGCT
* * *
560179 TTTTGAAGGCTTGAGTGACTATAAATCA-AGTTTTCTTGTAAAT
128 TTTAGAAGGCTTGAGTGACTATAAAT-AGAATTTTCTTGCAAAT
* * *
560222 GGATGGCTTTTGCTTTACGTTTCCTAAGAG-AAACATTCAATTATAATATATTTTAA-CAAAATA
1 GGATGGCTTTTGCTTGACGTTTCC-AAG-GCAAACATTCAAATATAATCTATTTTAACCAAAA-A
** *
560285 TGTAAAAAAAACACAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGG
63 TGT-AAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCTAGTAATAA-G
* * * *
560350 CTTTT-GAAAGCTTGAGTGATTATAAATGGAATTTTCTTGCCAAT
126 CTTTTAGAAGGCTTGAGTGACTATAAATAGAATTTTCTTGCAAAT
* * * *
560394 GGATGGCTTTT-CGTTGACGTTTGCCAAAGCAAACAGTCAAATATAATCTGTTTTAACCATAAAT
1 GGATGGCTTTTGC-TTGACGTTT-CCAAGGCAAACATTCAAATATAATCTATTTTAACCAAAAAT
** * * * * *
560458 GTAGGAAAATTCAACTTAAAATAAATTATGCGATTATAAAACCATTTTAAGCTAGTAATAAGTTT
64 GTAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCTAGTAATAAGCTT
* * * * * *
560523 TTAGAGGGCTTGAGTGATTATAAATTGACTTTTCCTACAAAT
129 TTAGAAGGCTTGAGTGACTATAAATAGAATTTTCTTGCAAAT
* **** *
560565 AGATGGCTTTTGCTTGACGTTTCACAAGGCAAACATTTTGTTATAATATATTTTAACCAAAAATG
1 GGATGGCTTTTGCTTGACGTTTC-CAAGGCAAACATTCAAATATAATCTATTTTAACCAAAAATG
* * * * * * *
560630 TAAAAGAATTGAATTTAAAATCAATAATTAAATTATAAAACTATTTAAAGCGAGTAATAAGGC-T
65 TAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCTAGTAATAA-GCTT
* * *
560694 TTCGAAGGCTTGAGTGAATATAAATAGACTTTTCTTGCAAAT
129 TTAGAAGGCTTGAGTGACTATAAATAGAATTTTCTTGCAAAT
* * * * * * *
560736 AGATGACTTTTGCTTCATGTTTCCTAAGGCAAATAATCAAATA-AATTCTATTTTAACTAAAAAT
1 GGATGGCTTTTGCTTGACGTTTCC-AAGGCAAACATTCAAATATAA-TCTATTTTAACCAAAAAT
* * * * * **
560800 ATAAAAAAATAT-AACTTAAAATCAATTATGAGGTTATCAAACCACTTAAAGGAAGTAATAAGGC
64 GTAAAAAAAT-TCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCTAGTAATAA-GC
* * * ** * * * *
560864 ATTCATAA-GAATGGGTGACCATAAATAGACTTTTCTTGCCAAT
127 TTTTAGAAGGCTTGAGTGACTATAAATAGAATTTTCTTGCAAAT
* * * * * * * *
560907 GAATGACTTTTTCTTTACGTTTCTCGAGGTAGACATTCAAATATAATCTATTTTAACAAAAAATG
1 GGATGGCTTTTGCTTGACGTTTC-CAAGGCAAACATTCAAATATAATCTATTTTAACCAAAAATG
* *
560972 TAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAA-ATGAATAATAAGGC-
65 TAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCT-AGTAATAA-GCT
* * * *
561035 TTTCGAAGGCTTGAGTAACTATAAAT-GGATTTTCTTGCCAAT
128 TTTAGAAGGCTTGAGTGACTATAAATAGAATTTTCTTGCAAAT
* * * * * * * **
561077 GGATGGTTTTTGCTTCATGTTTTCTGAA-GCAGACATTCAATTATAATATATTTTAATTAAAAAT
1 GGATGGCTTTTGCTTGACG-TTTC-CAAGGCAAACATTCAAATATAATCTATTTTAACCAAAAAT
* * * * * * * * *
561141 ATAAAAATATTTAACTTAAAATCAATTATGAGGTTATCAAACTACTTAAAGCAAGTAATAAGGCT
64 GTAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCTAGTAATAA-GCT
561206 TTTAGAAG
128 TTTAGAAG
561214 AATGGGTGAC
Statistics
Matches: 799, Mismatches: 166, Indels: 54
0.78 0.16 0.05
Matches are distributed among these distances:
170 134 0.17
171 515 0.64
172 138 0.17
173 12 0.02
ACGTcount: A:0.40, C:0.12, G:0.14, T:0.34
Consensus pattern (170 bp):
GGATGGCTTTTGCTTGACGTTTCCAAGGCAAACATTCAAATATAATCTATTTTAACCAAAAATGT
AAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCTAGTAATAAGCTTTT
AGAAGGCTTGAGTGACTATAAATAGAATTTTCTTGCAAAT
Found at i:561217 original size:341 final size:341
Alignment explanation
Indices: 560051--572769 Score: 5349
Period size: 342 Copynumber: 36.8 Consensus size: 341
560041 NNNNNNNNNC
* * * * * * * *
560051 GGATGGCTTGTGCTTCACGTTTT-TCAATACAAATAGTCAAATATAATCTGTTTTAACCAAAACA
1 GGATGGCTTTTGCTTCACGTTTTCTGAA-GCAGACATTCAAATATAATCTATTTTAACTAAAA-A
* * **
560115 GTA-AAACAATTTAACTTAAAATCAATTAT-ATGATTATAAAACCATTCAAAGTTAGTAATAA-G
64 -TATAAAAAATTTAACTTAAAATCAATTATGA-GATTATAAAACCATTTAAAGCAAGTAATAAGG
* * * ** * *
560177 TTTTTTGAAGGCTTGAGTGACTATAAATCA-AGTTTTCTTGTAAATGGATGGCTTTTGCTTTACG
127 CTTTTAGAA-GCTTGAGTGACTATAAAT-AGACTTTTCTTGCCAATGGATGACTTTTGCTTCACG
* * * * **
560241 TTTC-CTAAGAG-AAACATTCAATTATAATATATTTTAACAAAATATGTAAAAAAAACACAACTT
190 TTTCTC-AAG-GCAGACATTCAAATATAATCTATTTTAACAAAAAATGT-AAAAAAATTCAACTT
* * *
560304 AAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAAGCTTGAGTGA
252 AAAATCAATAATGAGATTATAAAACCATTTAAAACGAGTAATAAGGCTTTCGAAGGCTTGAGTGA
* *
560369 TTATAAATGGAATTTTCTTGCCAAT
317 CTATAAATGGACTTTTCTTGCCAAT
* * ** * * * * *
560394 GGATGGCTTTT-CGTTGACGTTTGCCAAAGCAAACAGTCAAATATAATCTGTTTTAACCATAAAT
1 GGATGGCTTTTGC-TTCACGTTTTCTGAAGCAGACATTCAAATATAATCTATTTTAACTAAAAAT
* * * * * * * *
560458 GTAGGAAAATTCAACTTAAAATAAATTATGCGATTATAAAACCATTTTAAGCTAGTAATAA-GTT
65 ATA-AAAAATTTAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCT
* * * * * * * * *
560522 TTTAGAGGGCTTGAGTGATTATAAATTGACTTTTCCTACAAATAGATGGCTTTTGCTTGACGTTT
129 TTTAGA-AGCTTGAGTGACTATAAATAGACTTTTCTTGCCAATGGATGACTTTTGCTTCACGTTT
* * **** * * * * *
560587 CACAAGGCAAACATTTTGTTATAATATATTTTAACCAAAAATGTAAAAGAATTGAATTTAAAATC
193 CTCAAGGCAGACATTCAAATATAATCTATTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATC
* * * * *
560652 AATAATTAAATTATAAAACTATTTAAAGCGAGTAATAAGGCTTTCGAAGGCTTGAGTGAATATAA
258 AATAATGAGATTATAAAACCATTTAAAACGAGTAATAAGGCTTTCGAAGGCTTGAGTGACTATAA
* *
560717 ATAGACTTTTCTTGCAAAT
323 ATGGACTTTTCTTGCCAAT
* * * * * * *
560736 AGATGACTTTTGCTTCATGTTTCCT-AAGGCAAATAATCAAATA-AATTCTATTTTAACTAAAAA
1 GGATGGCTTTTGCTTCACGTTTTCTGAA-GCAGACATTCAAATATAA-TCTATTTTAACTAAAAA
* * * * *
560799 TATAAAAAAATATAACTTAAAATCAATTATGAGGTTATCAAACCACTTAAAGGAAGTAATAAGGC
64 TAT-AAAAAATTTAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGC
* * * ** * * * * *
560864 ATTCATAAGAATGGGTGACCATAAATAGACTTTTCTTGCCAATGAATGACTTTTTCTTTACGTTT
128 TTTTAGAAGCTTGAGTGACTATAAATAGACTTTTCTTGCCAATGGATGACTTTTGCTTCACGTTT
* *
560929 CTCGAGGTAGACATTCAAATATAATCTATTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATC
193 CTCAAGGCAGACATTCAAATATAATCTATTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATC
* * *
560994 AATAATGAGATTATAAAACCATTTAAAATGAATAATAAGGCTTTCGAAGGCTTGAGTAACTATAA
258 AATAATGAGATTATAAAACCATTTAAAACGAGTAATAAGGCTTTCGAAGGCTTGAGTGACTATAA
561059 ATGGA-TTTTCTTGCCAAT
323 ATGGACTTTTCTTGCCAAT
* * * * *
561077 GGATGGTTTTTGCTTCATGTTTTCTGAAGCAGACATTCAATTATAATATATTTTAATTAAAAATA
1 GGATGGCTTTTGCTTCACGTTTTCTGAAGCAGACATTCAAATATAATCTATTTTAACTAAAAATA
* * * *
561142 TAAAAATATTTAACTTAAAATCAATTATGAGGTTATCAAACTACTTAAAGCAAGTAATAAGGCTT
66 TAAAAA-ATTTAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCTT
** * *
561207 TTAGAAGAATGGGTGAC----AAT--A-----------AAT--A-GACTTTTTCTTCACGTTTCT
130 TTAGAAGCTTGAGTGACTATAAATAGACTTTTCTTGCCAATGGATGACTTTTGCTTCACGTTTCT
** * * * *
561252 TGAGGCA-AGCATCCAAATATAATCTGTTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATTA
195 CAAGGCAGA-CATTCAAATATAATCTATTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATCA
* ** * *
561316 GTAATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTC-AA------A-AG-CT-TGAA
259 ATAATGAGATTATAAAACCATTTAAAACGAGTAATAAGGCTTTCGAAGGCTTGAGTGACTATAAA
*
561371 TGGACTTTTCTTGCCAAC
324 TGGACTTTTCTTGCCAAT
* * * * *
561389 GGGTGGCTTTTGCTTCACG-TTTCT-CAGCGTAAACAGTT-AAATATAATTTGTTTTAA-TCAAA
1 GGATGGCTTTTGCTTCACGTTTTCTGAAGC--AGACA-TTCAAATATAATCTATTTTAACT-AAA
* * * * * *
561450 ATTGTAAAAAAATTTAACTTAAAATTAATTATGCGATTATAAAACCATGTAAAGCTAGTAATAA-
62 AATAT-AAAAAATTTAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAG
* * * * * * ** ** * * * *
561514 GTTTTTTGAGGGCTTGAGTGATTATAAATTGATTTTTCGCGTAAATGTATGGCTTTTGCTTTATG
126 GCTTTTAGA-AGCTTGAGTGACTATAAATAGACTTTTCTTGCCAATGGATGACTTTTGCTTCACG
* ** * * *
561579 TTTCTCAAGGCAGACACTCACTTATAATATATTTTAACTAAAAATGTAAAAAAATTTAACTTAAA
190 TTTCTCAAGGCAGACATTCAAATATAATCTATTTTAACAAAAAATGTAAAAAAATTCAACTTAAA
* * * *
561644 ATCAATAATTAGATTATAAAACTATTTAAAGCGAGTAATAAGGCTTTCGAAGGCTTGAGTGATTA
255 ATCAATAATGAGATTATAAAACCATTTAAAACGAGTAATAAGGCTTTCGAAGGCTTGAGTGACTA
* * *
561709 TAAATAGTCTTTTCTTGCCAAC
320 TAAATGGACTTTTCTTGCCAAT
* * * * * * * * *
561731 GGATGGCTTATACTTCACATTTATC-GAGGCAAACAGTCAAATATAATCTGTTTTAACCAAAACC
1 GGATGGCTTTTGCTTCACGTTT-TCTGAAGCAGACATTCAAATATAATCTATTTTAACTAAAA-A
* * * * * *
561795 GA-AAAAACATTCAACTTGAAATCAATTATGCA-ATTATAAAACTATTTAAAGCTAGTAATAAGT
64 TATAAAAA-ATTTAACTTAAAATCAATTATG-AGATTATAAAACCATTTAAAGCAAGTAATAAGG
* * * * * *
561858 TTTATTAG-GGCTTGAGTGACAATAAATCGAGTTTTCTAAGGCTTTCAATGACTTGAGTGA-TTA
127 CTT-TTAGAAGCTTGAGTGACTATAAATAGACTTTTCT--TGC---CAATG----GA-TGACTT-
*** ** * * * * * ** * * *
561921 TAAATGGACTTTTCTACCAATGG-ATGGCTTTTGCTTCAAGTTCCTTGAGGCAGAGATTCAA-AT
180 TTGCTTCACGTTTCT--CAA-GGCA-GAC-----ATTCAA-AT--AT-AATC-TA-TTTTAACA-
* * * *
561984 ATAATCTATTTTAAAAAAATGTAAAAAAATTCAATCTAAAATCAATAATGAGACTATAAAACCAT
229 A-AA---AATGTAAAAAAAT-T----CAA--C--T-TAAAATCAATAATGAGATTATAAAACCAT
* * * * * *
562049 TTAAAGCAAGTAATAAAGCTTTTGAAGGCTTGAGTGACTATAAATAGACTTTTCTTGTCAAT
280 TTAAAACGAGTAATAAGGCTTTCGAAGGCTTGAGTGACTATAAATGGACTTTTCTTGCCAAT
* * * * * * * * *
562111 GGATGGCTTTTGCTTTACGTTTTTTGAGGCAAACAGTCAAATATGATCTGTTTTAACCAAAAATG
1 GGATGGCTTTTGCTTCACGTTTTCTGAAGCAGACATTCAAATATAATCTATTTTAACTAAAAATA
* * ** ** *
562176 TAAAAAAATTCAACTTAGAATCAATTATGAGATTATAAAACCATTTATGGCTCGTAAT---GTTT
66 T-AAAAAATTTAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCTT
* * * * * * *
562238 TTTGAAGGCTTTAGTGACTATAAATAGACTTTTCTTACTAATGGAT-AGCTTTTGCTTTATGATT
130 TTAGAA-GCTTGAGTGACTATAAATAGACTTTTCTTGCCAATGGATGA-CTTTTGCTTCACGTTT
** * * * * *
562302 CTTTGAGGCAGACATT-TAGT-TAATATTATTTT-A-ATAAAATGTAAAAATA-TCAACTTAAAA
193 C-TCAAGGCAGACATTCAAATATAAT-CTATTTTAACAAAAAATGTAAAAAAATTCAACTTAAAA
* * * *
562362 TC--------GATTATAAAACTATTTAAAGCGAGTAATAAGGCTTTCAAAGGCTTAAGTGACTAT
256 TCAATAATGAGATTATAAAACCATTTAAAACGAGTAATAAGGCTTTCGAAGGCTTGAGTGACTAT
* *
562419 AATTGGATTTTTCTTGCC-AT
321 AAATGGACTTTTCTTGCCAAT
** * * *
562439 GGGATGATTTTTGCTTCATGTTTTCTGAAGCAGACATTCAATTATAA-CATATTTTAATTAAAAA
1 -GGATGGCTTTTGCTTCACGTTTTCTGAAGCAGACATTCAAATATAATC-TATTTTAACTAAAAA
* * *
562503 TATAAAAATATTTAACTTAAAATCAATTATGAGTTTATTAAACCACTTAAAGCAAGTAATAAGGC
64 TATAAAAA-ATTTAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGC
** * * * * * **
562568 TTTTAGAAGAATGGGTGACAATAAATAGATTTTTCTTGTCAATGAATGACTTTTTTTTTCACGTT
128 TTTTAGAAGCTTGAGTGACTATAAATAGACTTTTCTTGCCAATGGATGAC-TTTTGCTTCACGTT
* * * * *
562633 TCTCAA-GAAG-CATCCAAATATAATCTGTTTTAACTAAACATGTAAAAAAATTCAACTTAAAAT
192 TCTCAAGGCAGACATTCAAATATAATCTATTTTAACAAAAAATGTAAAAAAATTCAACTTAAAAT
* * * * *
562696 TAGTAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGTTTTC-AA------AG-G-CT-TG
257 CAATAATGAGATTATAAAACCATTTAAAACGAGTAATAAGGCTTTCGAAGGCTTGAGTGACTATA
* *
562751 AATGGACTTTTCTTACCAAC
322 AATGGACTTTTCTTGCCAAT
* * * * * * * * *
562771 GGGTGGCTTTTGCTTCACGTTTCTCTGGA-TAAATAGTAAAATATAATCTGTTTTAA-TCAAAAC
1 GGATGGCTTTTGCTTCACGTTT-TCTGAAGCAGACATTCAAATATAATCTATTTTAACT-AAAAA
* * * * **
562834 TATAAAAAAATTTAACTTAAAATCAATTATGTGATTATAAAACTATGTAAAGCTAGTAATAAGTT
64 TAT-AAAAAATTTAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGC
* * ** ** * * *
562899 TTTTA-AGGGCTTGAGTGACTATAAATTA-ATTTTTCCCGTAAATGTAT-AGTTTTTGCTTCATG
128 TTTTAGA-AGCTTGAGTGACTATAAA-TAGACTTTTCTTGCCAATGGATGA-CTTTTGCTTCACG
* ** * * * *
562961 TTTCTTAAGGCAGACATTCACTTATAATATATTTTAACTAAAAATATAAAAAAATTTAACTTAAA
190 TTTCTCAAGGCAGACATTCAAATATAATCTATTTTAACAAAAAATGTAAAAAAATTCAACTTAAA
* * * * * *
563026 ATCAATAATTAGATTATAAAATCATTTAAATCGAGTAATAAAGTTTTCGAAGGCTTGAGTGATTA
255 ATCAATAATGAGATTATAAAACCATTTAAAACGAGTAATAAGGCTTTCGAAGGCTTGAGTGACTA
* * * *
563091 TAAATAGTCTTTTCTTGCAAAC
320 TAAATGGACTTTTCTTGCCAAT
* * * * * * *
563113 GGATGACTTTTACTTCACG-TTTCTCGAGGTAAACAGTCAAATATAATCTATTTTAACTAAAACT
1 GGATGGCTTTTGCTTCACGTTTTCT-GAAGCAGACATTCAAATATAATCTATTTTAACTAAAAAT
* * * * * **
563177 ATAAAAACATTCAGCTTCAAATCAATTATGCGATTATAAAACCATTTAAAGCTAGTAATAAGTTT
65 ATAAAAA-ATTTAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAG-GC
* * * * **
563242 TTTTAG-GGCTTGAGTGACTATAAATTGACTTTTCTAAGGCTTTCAATGGCTTGAGTGACTATAA
128 TTTTAGAAGCTTGAGTGACTATAAATAGACTTTTCT--TGC---CAAT-G---GA-TGACTTTTG
* ** * * * * * ** * *
563306 ATGGACTTTTCTTACCAATGG-ATGGCTTTTGCTTCACATTCCTTGAGGCAAATATTCATATATA
183 CTTCACGTTTC-T--CAA-GGCA-GAC-----ATTCA-AAT--AT-A---ATCTATT-TTA-ACA
** * * * * * * * *
563370 ATCTATTTTAACAAAAAATGT-AA--AAAAATTCAATCTAA-AATCATTAATGAGA-C-TATAAA
229 A-AAAATGT-A-AAAAAAT-TCAACTTAAAA-TCAA--TAATGA-GATT-ATAAAACCATTTAAA
* * * * *** * *
563429 ACCA-T-TTAAAGCAAGTAATAAGGCTTTTGAAG-G-CT-TGAGT-GACCATAAATGGACTTTTC
285 ACGAGTAATAAGGC--TTTCGAAGGC--TTG-AGTGACTATAAATGGA-C-T---T------TTC
**
563488 TTGTGAAT
334 TTGCCAAT
* * * * *
563496 GGATGGCTTTTGC--CACATGTTTCTTGAGGCAAACATTCAAATATAAT-TTTTTTAACCAAAAA
1 GGATGGCTTTTGCTTCACGT-TTTC-TGAAGCAGACATTCAAATATAATCTATTTTAACTAAAAA
* * * **
563558 TGTAAAACAATCTAACTTAAAATCAATGATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGC
64 TATAAAA-AATTTAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGC
* * * * * ** * * *
563623 TTTCTA-TAGATTCAGTGACTATAAATGGACTTTTCTTACTTATGGATGGCTTTTACTTCACGTA
128 TTT-TAGAAGCTTGAGTGACTATAAATAGACTTTTCTTGCCAATGGATGACTTTTGCTTCACGTT
* * * * * * *
563687 TC-CTAAGGCAGATATTCAAATATAATTTGTTTTAACCAAAAATGCAAAAACATTCAAGTTAAAA
192 TCTC-AAGGCAGACATTCAAATATAATCTATTTTAACAAAAAATGTAAAAAAATTCAACTTAAAA
* * * * **** * *
563751 TCAATTATGAGATTATCAAATCATTTAAAAGGAGTAATAAGGCTTTCGAAAAAATAAGTTACTAT
256 TCAATAATGAGATTATAAAACCATTTAAAACGAGTAATAAGGCTTTCGAAGGCTTGAGTGACTAT
* *
563816 AAATAGACTTTTCTTGCTAAT
321 AAATGGACTTTTCTTGCCAAT
* * * * * * * * *
563837 GAATAG-TTTTTCTTTTACG-TTTCTCAAGGTAGACATTCTAATATAATCTGTTTTAATTAAAAA
1 GGATGGCTTTTGC-TTCACGTTTTCTGAA-GCAGACATTCAAATATAATCTATTTTAACTAAAAA
* * * * * **
563900 TGTAAAAACATTTAACTTAAAATCAGTAATAAGATTATAAAACTATTTAAAGTGAGTAATAAGG-
64 TATAAAAA-ATTTAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGC
* * * * * * *
563964 TTTCCAAAAACTTGAGTGACTATAAATAGACTTTTCTTGCCAATGGATG-GTTTTCCTTAATGTT
128 TTT-TAGAAGCTTGAGTGACTATAAATAGACTTTTCTTGCCAATGGATGACTTTTGCTTCACGTT
* * ** * * * *
564028 TATCAAGGCAAACATTCAGTTATCATATATTTTAATAAAAAATATAAAAAAATTCAACTTAAAAT
192 TCTCAAGGCAGACATTCAAATATAATCTATTTTAACAAAAAATGTAAAAAAATTCAACTTAAAAT
* * ** * * * * *
564093 CAAGT-CTGAGATCATAAAAGAATTTAAAGCAAGTAATAAGGCTTTCAAAGGCTTAAGTGACTAG
257 CAA-TAATGAGATTATAAAACCATTTAAAACGAGTAATAAGGCTTTCGAAGGCTTGAGTGACTAT
* *
564157 AAATAGACTTATT-TTGTCAAT
321 AAATGGACTT-TTCTTGCCAAT
* * *
564178 GGAGGGCTTTTGCTTCACGTTTGTC--AAGGCAGACATTGAAATATAATCTGTTTTAA-TAAAGA
1 GGATGGCTTTTGCTTCACGTTT-TCTGAA-GCAGACATTCAAATATAATCTATTTTAACTAAA-A
** * * ** *
564240 ATATAAAACAATCCAACTCAAAATCAATTATGAGATTATAAAACCATTTAACGCAACCAATAGGG
63 ATATAAAA-AATTTAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGG
* * * * * * *
564305 CTTTCA-ATAGCTTGAATGAGTATAAATAGACTTTTCATACCAATGGATGGCTTTTGCTTCATGT
127 CTTTTAGA-AGCTTGAGTGACTATAAATAGACTTTTCTTGCCAATGGATGACTTTTGCTTCACGT
** * * * * *
564369 TTCTTGAGACAGACATTCAAATATAATCTGTTTTAA-ACAAAAA--TAAAAAAAAT-GATTTAAA
191 TTCTCAAGGCAGACATTCAAATATAATCTATTTTAACA-AAAAATGTAAAAAAATTCAACTTAAA
* ** * * * *
564430 ATCAATAATGAGATTAGAAAACCATTTAAAGTGAGTAACAAGGCTTTTGAAGACTTAAGTGACTA
255 ATCAATAATGAGATTATAAAACCATTTAAAACGAGTAATAAGGCTTTCGAAGGCTTGAGTGACTA
* *
564495 TAAATAGAGTTTTCTTGCCAAT
320 TAAATGGACTTTTCTTGCCAAT
* * * * * * * * * *
564517 TGATGGCTTTTGCTTTAAG-TTTCTCAAGGTAAACAATCAAAGATAATCTGTTTTAACCAAAAAT
1 GGATGGCTTTTGCTTCACGTTTTCTGAA-GCAGACATTCAAATATAATCTATTTTAACTAAAAAT
* * ** * * *
564581 ACTAAAAAATTCAACTTAAAATCAGTTATGAGATTATAAAATTATTTAAACCTAGTAATAA-GTT
65 A-TAAAAAATTTAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCT
** * ** * * *
564645 TTTAGTGGGCTTGAGTGACTATAAAT-GTCTTTTCTCACAAATAGATTG-CTTTTGCTTCATGTT
129 TTTAG-AAGCTTGAGTGACTATAAATAGACTTTTCTTGCCAATGGA-TGACTTTTGCTTCACGTT
* ** * * ** * * *
564708 TTTTTAGGTAGATATTCAGTTATAATATATTTTAAGCAAAAAA-GTAAAAAAATTTAACTTGAAA
192 TCTCAAGGCAGACATTCAAATATAATCTATTTTAA-CAAAAAATGTAAAAAAATTCAACTTAAAA
* * *
564772 TCAATTATGAGATTATAAAACCATTT-AAAGGAAGTAATAAGGCTTAT-GAAGGCTTAAGTGACT
256 TCAATAATGAGATTATAAAACCATTTAAAACG-AGTAATAAGGCTT-TCGAAGGCTTGAGTGACT
* * *
564835 ATATATAGACTTTTCTTGTCAAT
319 ATAAATGGACTTTTCTTGCCAAT
** * ** * *
564858 GGATGGCTTTTGCTTCA-AATTTCTCAAGGTGCACATTCAAATATAATCTGTTTTAACAAAAAAT
1 GGATGGCTTTTGCTTCACGTTTTCTGAAGCAG-ACATTCAAATATAATCTATTTTAACTAAAAAT
* * * * * * * ** * *
564922 GTTAGAAAATCTAACTTAAAATCTATTACGAGATTATAAAACCATCTAAGGGGAGAAATAA-GCC
65 -ATAAAAAATTTAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCT
* * * * * *
564986 TTTCGAAGGCTTGAGTTACTATAAATGGA-TTTTCTTGTCAATGGAGGGCTTTTGCTTCACGTTT
129 TTTAGAA-GCTTGAGTGACTATAAATAGACTTTTCTTGCCAATGGATGACTTTTGCTTCACGTTT
** * * * *
565050 CTTGAGGCAGACATTCAAATATAATTTGTTTTAACAAAAAATGTAAAATAGTTCAACTTAAAATC
193 CTCAAGGCAGACATTCAAATATAATCTATTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATC
* * * *
565115 AATTACGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTC-AATGACTTGAGTGACTATA
258 AATAATGAGATTATAAAACCATTTAAAACGAGTAATAAGGCTTTCGAA-GGCTTGAGTGACTATA
* *
565179 AATGGACTTTTCTTACTAAT
322 AATGGACTTTTCTTGCCAAT
*** * * *
565199 GGATAATTTTTACTTCACGTTTCCT-AAGGCAGACATTCAAATATAATCTATTTTAACAAAAAAA
1 GGATGGCTTTTGCTTCACGTTTTCTGAA-GCAGACATTCAAATATAATCTATTTTAAC-TAAAAA
* * * * * * *
565263 TGTAAAAAATTCAACTTAAAATCAATAATCAGATTATAAAACTATTTAAAGCAACTAATAAAGCT
64 TATAAAAAATTTAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCT
* * * * * * * * *
565328 ATCA-AAGGCTTGATTGACTACAAATAAACTTTTCTTGTCAATGGGTGGCTTTTGCTTCATGTTT
129 TTTAGAA-GCTTGAGTGACTATAAATAGACTTTTCTTGCCAATGGATGACTTTTGCTTCACGTTT
* * ** * * **
565392 CCCAAGGTAGACATTCAGTTATAATTTAATTTAACCAAAAATATAAAAAAAAATT-AACTTAAAA
193 CTCAAGGCAGACATTCAAATATAATCTATTTTAA-CAAAAA-ATGTAAAAAAATTCAACTTAAAA
* * * * * **
565456 TGAATTATGAGACTATAAAACCATTTAAAGCAAGTAATAAGGCTTTCGAAGGCTTGAGTGACTGG
256 TCAATAATGAGATTATAAAACCATTTAAAACGAGTAATAAGGCTTTCGAAGGCTTGAGTGACTAT
* *
565521 AAATGGATTTTTTTTGCCAAT
321 AAATGGACTTTTCTTGCCAAT
** * * * * ** * * ** * *
565542 ATATGTCTTTTACTTTATGTTTTAC--AAGGTGAATATTTAGTTATAATATATTTTAATTAAAAA
1 GGATGGCTTTTGCTTCACGTTTT-CTGAAGCAG-ACATTCAAATATAATCTATTTTAACTAAAAA
* * * * *
565605 TATAAAGAAGTTCAACTTAAAATCAATTATAAGATTATAAAACTC-TTGAAAGTAAGTAATAAGG
64 TATAAA-AAATTTAACTTAAAATCAATTATGAGATTATAAAAC-CATTTAAAGCAAGTAATAAGG
* * * *
565669 C-TTTCGAA-CAGTTGAGTGACTATAAATAGACCTTTCTTACCAATGGGT-AGCTTTTGCTTCAC
127 CTTTTAGAAGC--TTGAGTGACTATAAATAGACTTTTCTTGCCAATGGATGA-CTTTTGCTTCAC
* * * * * ** * *
565731 ATTTCCTGAAGG-AAATAGTCAAATATAATCTGCTTTAACCAAAAATGTAAAACAATTCAACTTA
189 GTTT-CTCAAGGCAGACATTCAAATATAATCTATTTTAACAAAAAATGTAAAAAAATTCAACTTA
* * ** * * * * * *
565795 AAATCAATTATAAGATTATATGATCATTTAAAGA-GGGTGATAAGGCTTTTGAAGGCTTAAATGA
253 AAATCAATAATGAGATTATAAAACCATTTAAA-ACGAGTAATAAGGCTTTCGAAGGCTTGAGTGA
* *
565859 CTATAAATGGACTTTTCATGTCAAT
317 CTATAAATGGACTTTTCTTGCCAAT
* * * * * *
565884 GGATGACTTTTGCTTCAC-TTTTCTTGAAG-TGTACATTCATATATAATTTGTTTTAA-TCAAAC
1 GGATGGCTTTTGCTTCACGTTTTC-TGAAGCAG-ACATTCAAATATAATCTATTTTAACT-AAAA
* * * ** * ** * *
565946 ATGTAAAAACTTTTAACTTAATATTTATTATGATATTATAAAACCATTTAAAGGGAGAAATAAGC
63 ATATAAAAA-ATTTAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGG
* * * **
566011 CTTTTA-AAGGCTTGAGTGACTATAAATAGATTTTTCTTACCAATGGAGGGTTTTTGCTTCACGT
127 CTTTTAGAA-GCTTGAGTGACTATAAATAGACTTTTCTTGCCAATGGATGACTTTTGCTTCACGT
** * * * * **
566075 TTCTTGAGACAGACATTCATATATAATCTGTTTTAACCAAAAATGTAAAGTAATTCAACTTAAAA
191 TTCTCAAGGCAGACATTCAAATATAATCTATTTTAACAAAAAATGTAAAAAAATTCAACTTAAAA
*** * * *
566140 TCAATTGCGAGAATATAAAACTATTTAAATCGAGTAATAAGGCTTTC-AATGGCTTGAGTGACTA
256 TCAATAATGAGATTATAAAACCATTTAAAACGAGTAATAAGGCTTTCGAA-GGCTTGAGTGACTA
*
566204 TAAATGAACTTTTCTTGCCAAT
320 TAAATGGACTTTTCTTGCCAAT
* * * *
566226 GGATAGTTTTTACTTTACGTTTTCT-AAGGCAGACATTCAAATATAATCTATTTTAACTAAAAA-
1 GGATGGCTTTTGCTTCACGTTTTCTGAA-GCAGACATTCAAATATAATCTATTTTAACTAAAAAT
* * *** *
566289 AGTAAAAAACTTCAACTTAAAACCAA-TAGTGAGATTATAAAACCATTTAAATTTAGTAATAAGT
65 A-TAAAAAA-TTTAACTTAAAATCAATTA-TGAGATTATAAAACCATTTAAAGCAAGTAATAAGG
* * * * * * *
566353 C-TATCGAAGACTTGAATGACTATAAATGGACTTTTGTTGTCAAGGGATGGA-TTTTGCTTCACG
127 CTTTTAGAAG-CTTGAGTGACTATAAATAGACTTTTCTTGCCAATGGAT-GACTTTTGCTTCACG
** ** * * ** *
566416 TTT-TCCAAGATAGGTATTCAAGTATAATTTATTTTAATTAGAAATGTAAAAAAATTCAACTTAA
190 TTTCT-CAAGGCAGACATTCAAATATAATCTATTTTAACAAAAAATGTAAAAAAATTCAACTTAA
* * * * * *
566480 AATCAATTATGAGATCATAAAACAATTTAAAGCAAGTAATAAGGCTTTCAAAGGCTTGAGTGACT
254 AATCAATAATGAGATTATAAAACCATTTAAAACGAGTAATAAGGCTTTCGAAGGCTTGAGTGACT
* *
566545 ATAAATGGACTTTTCTTACTAAT
319 ATAAATGGACTTTTCTTGCCAAT
* * * * * * * *
566568 GGATAGTTTTTGCTTCATG-TTTCTTGAGGCAGACATTCAAATATAATTTATTTGAACCAAAAGT
1 GGATGGCTTTTGCTTCACGTTTTC-TGAAGCAGACATTCAAATATAATCTATTTTAACTAAAAAT
* * * * * **
566632 GTAGAAAAATTCAATTTAAAA-CTAA-TAGTGAGATAATAAAACAATTTAAAGTGAGTAATAAGG
65 ATA-AAAAATTTAACTTAAAATC-AATTA-TGAGATTATAAAACCATTTAAAGCAAGTAATAAGG
* * * * * * * *
566695 C-TATCGACGGCTTGAGTGACTATAAATGGATTTTTCTTGTCGATGGATGAGTTTTGCTTCACGT
127 CTTTTAGA-AGCTTGAGTGACTATAAATAGACTTTTCTTGCCAATGGATGACTTTTGCTTCACGT
* * * ** * * *
566759 TTCTCGAGGTAGACATTTAGTTATAATTTATTTTAATAAAAAAAGTAAAAAAAAATTCAACTTAA
191 TTCTCAAGGCAGACATTCAAATATAATCTATTTTAACAAAAAATGT--AAAAAAATTCAACTTAA
* * * *
566824 AATCAATTATGAGATTATAAAACTATTTAAAGCGAGTAATAAGGCTTTCGAAGGCTTGAGTGACC
254 AATCAATAATGAGATTATAAAACCATTTAAAACGAGTAATAAGGCTTTCGAAGGCTTGAGTGACT
*
566889 ATAAATGGACTTTTCTTGCCAAC
319 ATAAATGGACTTTTCTTGCCAAT
* * * * * * * * * * * *
566912 GGATGGCATTTGCTTCATGTTTCCTGAGGTAAATAGTCAAATATAACCT-GTTTAACTATAAATG
1 GGATGGCTTTTGCTTCACGTTTTCTGAAGCAGACATTCAAATATAATCTATTTTAACTAAAAATA
* * * *
566976 TAAAAAAATTAAACTTAAAATCAATTATGCGATTATAAAACCATTTAAAGCTAGTAATAAGTCTT
66 T-AAAAAATTTAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCTT
* ** * * * ** * * ** **
567041 TT-GAGGGCTTGAAAGACTAGAAGTTGA-TTTTCTCACAAATAGATGGTTTTTGCTTCAAATTT-
130 TTAGA-AGCTTGAGTGACTATAAATAGACTTTTCTTGCCAATGGATGACTTTTGCTTCACGTTTC
* * * * * *
567103 TCGAAGGTAGATATTCAATTATAATATATTTTAATC-AAAAATATAAAAAAATACAACTTAAAAT
194 TC-AAGGCAGACATTCAAATATAATCTATTTTAA-CAAAAAATGTAAAAAAATTCAACTTAAAAT
* * * * * * * *
567167 CAATTATGAGATTATAAAACTATTTGAAGCAAGTAATAAGGCTATCAAAGGCTTGAGAGACTATA
257 CAATAATGAGATTATAAAACCATTTAAAACGAGTAATAAGGCTTTCGAAGGCTTGAGTGACTATA
* *
567232 AATGGACTTTTATTGTCAAT
322 AATGGACTTTTCTTGCCAAT
* * * * * * * * **
567252 GGATGGCTTATCCTTCAC-ATTTCTCAAGGTAAACATTC--A-GTAATATATTTTAAAGAAAAAT
1 GGATGGCTTTTGCTTCACGTTTTCTGAA-GCAGACATTCAAATATAATCTATTTTAACTAAAAAT
** * *
567313 ATAAAAAATTTAACTTAAAATCAATTATGAGACAAAAAAACTATTTAAAGCAAGTAATAAGG-TT
65 ATAAAAAATTTAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCTT
* * ** * * *
567377 TTTGAAGGCTTGAGTGACTATAAATGGACTTTTCTTGTTAATGGATGGCTTTAGCTTCATGTTTC
130 TTAGAA-GCTTGAGTGACTATAAATAGACTTTTCTTGCCAATGGATGACTTTTGCTTCACGTTTC
* * * * * * * *
567442 -CTAAGACAAATAGTCAAATATAATCTATTTTAGCAAAAACTATAGAAAAATTCAACTTAAAATC
194 TC-AAGGCAGACATTCAAATATAATCTATTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATC
* * ** ** * *
567506 AATTACAT--GATTATAAAACCATTTAAAGCTAGTAATAAGTTTTTTTAGGGCTCGAGTGACTAT
258 AA-TA-ATGAGATTATAAAACCATTTAAAACGAGTAATAAGGCTTTCGAAGGCTTGAGTGACTAT
* * *
567569 AAATCGACTTTACTAAGGCTTTCAAT
321 AAATGGACTTTTCT--TGC---CAAT
** * ** ** * * *
567595 GGCTTAAGTAACTATAAATGGACTTTTC-TTACCCATGGATGGCTTTTGCTTCATGTTTCCCAAG
1 GG----A-TGGCT-T---TTG-CTTCACGTT-TTC-T-GA-AGC---AG--ACA---TT--CAA-
* * * * * * * **
567659 GCAGACATTCAGTTATAATTTATTTTAACCACAAATGTAAAAAGATTCAACTTAAAATCAATTAT
41 --ATATAATC---TAT-TTTAA--CT-A--A-AAATATAAAAAATTT-AACTTAAAATCAATTAT
*********** ** * * * *
567724 GAGACNNNNNNNNNNTTTAAAGTGAGTAATAAGGCTTTCA-ATGGCTTGAGGGACTATAAATGGA
93 GAGATTATAAAACCATTTAAAGCAAGTAATAAGGCTTTTAGA-AGCTTGAGTGACTATAAATAGA
* * * * * *
567788 CTTTTCTTACCAATGCG-TGGCTTTTGCTTCACGTTT-TCTGAGGTAGATATTCAAATATAATAT
157 CTTTTCTTGCCAATG-GATGACTTTTGCTTCACGTTTCTC-AAGGCAGACATTCAAATATAATCT
* * * * **********
567851 ATTTTAATAAAAAATATAAAATAATTCAATTTAAAATCAATAATGAGATTATAAANNNNNNNNNN
220 ATTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAA
* * * * * * **
567916 GCGAGTAATAAGGCTTTCGAAGGCTTAAGTAACTATAAATGAAAAAATTTAACTTAAAATCAAT
285 ACGAGTAATAAGGCTTTCGAAGGCTTGAGTGACTATAAATG---GACTTT-TCTT---GCCAAT
* * * *** ** * * * * *
567980 -CATGAGATTAT--AAAAC-AATT-TAAAG--GA-A-GC-AACA-AGTCT-TTTGAAAGCTTGAA
1 GGATG-GCTTTTGCTTCACGTTTTCTGAAGCAGACATTCAAATATAATCTATTT-TAA-C-T-AA
* ** * * * * * *
568033 TAACTATAAATAAATTTTTCTTACCAATGGAGGGCTTTTGCTTTATGTTTTTTGAGGCAAA-CAT
61 -AAATATAAA-AAATTTAACTTA-AAAT-CA---ATTATG----A-G-ATTAT-A---AAACCAT
* * ** * ***** * * * * * ** *
568097 TCAAA--TA-TAAT-CTG-TTTTAACAAAAAAAAATCAAACAATTCAACTAAAAATCAATT-ATG
109 TTAAAGCAAGTAATAAGGCTTTT-AGAAGCTTGAGT--GACTA-T-AA--ATAGA-CTTTTCTTG
** * ** ** ** * *
568156 AGATTATAAAACTATTTAAAGAGAGAAATAAGGCTTT-T-AATGGCTTGAGTGAC-TAT-AAAT-
166 CCAATGGATGACT-TTT-------G-CTTCACG-TTTCTCAA-GGC---A--GACAT-TCAAATA
* * * *** ******** * * * * * *
568216 GAA-CTTTTCTTACCAATGGATGGCTTTCGCTTCACAGTTCCTGAAGT-AGACAATCA-AATAT-
214 TAATCTATT-TTAACAAAAAATGTAAAAAAATTCA-A---CTTAAAATCA-ATAATGAGATTATA
*** ** *** * ** * *
568277 AATTTATTTTAACGAAAAATGTAA-AAAAATTTAACTTAAATTCAATT-ATGAGATTATAAAAT-
273 AAACCA-TTTAA--AACGA-GTAATAAGGCTTT--C--GAAGGC--TTGA-GTGACTAT-AAATG
* ***
568339 -A-ATTTAAAGCGAGCAAT
326 GACTTTTCTTGC---CAAT
* * * * * ** * * * *
568356 --AAGGCTTTCAAAAGCTTGA-GTGATTAT-AAATAGACTTTTCTTGTCAATGGAT-GTCTTTTG
1 GGATGGCTTT----TGCTTCACGT-TTTCTGAAGCAGAC-ATTC----AAAT--ATAATCTATT-
* * * * ** * ** *
568416 CTTCACGTTTTTCAAGGTAGATATTTAGTTATAATTTATTTTAATAA-AAATATAAAAACATTTA
53 -TTAAC-----T-AA---A-A-ATATA--AAAAATTTAACTTAA-AATCAAT-T-ATGAGA-TT-
* ** ** * * ** * * * * *
568480 ACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCTTTCAATGGCTTGA
99 A--TAAAA-CCATT-T-A-A--A-GCAAGTA-ATAAGGC-TTTTAGAA-GC-TTGAGTGAC-T-A
* * ** * * ** * *
568545 GTGATATA-AATAGACTTTTCTTACCATTGGATGGTTTTTGCTTCACATTTC-CTTAGGCAGACA
149 -T-AAATAGACT--TTT---CTTGCCAATGGATGACTTTTGCTTCACGTTTCTC-AAGGCAGACA
* ** * *
568608 TTTAAATATAATCTATTTTAATGAAAAATGTAAAAAAA-TCAACTTAGAATCAATAATGAGATCA
206 TTCAAATATAATCTATTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTA
* * * *
568672 TAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGTTTGAGTGACTATAAATGAACTTTTCTT
271 TAAAACCATTTAAAACGAGTAATAAGGCTTTCGAAGGCTTGAGTGACTATAAATGGACTTTTCTT
**
568737 TTCAAT
336 GCCAAT
* * * * * * * ** * * *
568743 GGATGACTTTAGGTTCAGGTTTCCCATG--GTAGACAATCAGTTATAATTTATTTTAACCACAAA
1 GGATGGCTTTTGCTTCACGTTT-TC-TGAAGCAGACATTCAAATATAATCTATTTTAACTAAAAA
* * * * *
568806 TGTAAAAAAATTTAACTTAAAATCAATTATGAGACTATAAAACTA-TTAAAACTGAGTAATAAGG
64 TAT-AAAAAATTTAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGC-AAGTAATAAGG
* * * * ** *
568870 CTTTT-GAAGGCTTCAGTGACTATAAATATACTTTTCTTGTCATTGGATGGGTTTTGCTTCACAT
127 CTTTTAGAA-GCTTGAGTGACTATAAATAGACTTTTCTTGCCAATGGATGACTTTTGCTTCACGT
* * * * * * ** *
568934 TTC-CTGAGGTAAACAGTCAAATATAATCTATTTTAATAAAAAATATGCAAAGATTCAACTTAAA
191 TTCTC-AAGGCAGACATTCAAATATAATCTATTTTAACAAAAAATGTAAAAAAATTCAACTTAAA
* * * * ** * *
568998 ATCAATTATGAGATTATAAAATCATTTAAAGCTAGTAATAAGTTTTTTG-AGAACTTGAGTGACT
255 ATCAATAATGAGATTATAAAACCATTTAAAACGAGTAATAAGGCTTTCGAAG-GCTTGAGTGACT
* ***
569062 ATAAATAGACTTTTCTTATTAAT
319 ATAAATGGACTTTTCTTGCCAAT
* * * *
569085 GGATGGCTTTTGCTCCACGTTTT-TCGAGGC-GA-A--C----AT--T-TAGTTTAACCAAAAAT
1 GGATGGCTTTTGCTTCACGTTTTCT-GAAGCAGACATTCAAATATAATCTATTTTAACTAAAAAT
* * * *
569138 ATAAAAAAAATTCAA-TTAAAAATCAATTATGAGACTATAAAACCATTTAAAGCGAGTAAATAAA
65 AT--AAAAAATTTAACTT-AAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGT-AATAAG
* ** * ** *
569202 GC-TTTCGAAATATTGAGCGACTATAAAT-GAACTTTTCTTGCCAATGGATGGTTTTTGCTTCAT
126 GCTTTTAG-AAGCTTGAGTGACTATAAATAG-ACTTTTCTTGCCAATGGATGACTTTTGCTTCAC
* * * * * *
569265 GTTTCAT-AAGGTAGATATTCAAATATAATGTATTGTAACAAAGAATATAAAAAAATTCAACTTA
189 GTTTC-TCAAGGCAGACATTCAAATATAATCTATTTTAACAAAAAATGTAAAAAAATTCAACTTA
* * * * *
569329 AAATGAATTATGAGATTTATAAAATCATTTAAAGCAAGTAATAAGGCTTTC-AATGGCTTGAGTG
253 AAATCAATAATGAGA-TTATAAAACCATTTAAAACGAGTAATAAGGCTTTCGAA-GGCTTGAGTG
*** * *
569393 ACTATAAACAAACTTTTCTTACCATT
316 ACTATAAATGGACTTTTCTTGCCAAT
* * * * * * * *
569419 GGGTGGCTTTTGCTTCATGTTTCCTTAGGCAGACATTCAAATATAACCTATTTTAACGAAAAATG
1 GGATGGCTTTTGCTTCACGTTTTCTGAAGCAGACATTCAAATATAATCTATTTTAACTAAAAATA
* * * * * * * *
569484 TAAAACAATTCAACTTAGAATCAATAATGGGATCATAAAATCATTTAAAGCGAGTAATAGGGCTT
66 TAAAA-AATTTAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCTT
* * *** * * * *
569549 TT-GAAGGTTTGAGTGACTATAAATGGACTTTTCTTTTTAATGGATGGCTTTTTCTTCATGTGTC
130 TTAGAA-GCTTGAGTGACTATAAATAGACTTTTCTTGCCAATGGATGACTTTTGCTTCACGTTTC
* * * ** * * * * *
569613 CCATGGCAGACAATCAGTTA-AATTTATTTTAACCACAAATGCAAAAAAATTCAACTTAAAATTA
194 TCAAGGCAGACATTCAAATATAATCTATTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATCA
* * * * * *
569677 ATTATGAGACTAT-GAA-CA-TTAAAATAGAGTAATAAGGCTTTCGAAGGCTTCAGTGATTATAA
259 ATAATGAGATTATAAAACCATTTAAAA-CGAGTAATAAGGCTTTCGAAGGCTTGAGTGACTATAA
** ** *
569739 ATATACTTTTCTTATCATT
323 ATGGACTTTTCTTGCCAAT
* * * * * *
569758 GGATGGATTTTGCTTCATG-TTTCTTG-AGATAAACAGTCAAATATAATCTGTTTTAA-TAAAAA
1 GGATGGCTTTTGCTTCACGTTTTC-TGAAG-CAGACATTCAAATATAATCTATTTTAACT-AAAA
* ** *
569820 ATATAAAAAATTTAACTTAAAATTAATTATGAGATTATAAAACCATTTAAAGTTAGTAATAA-GT
63 ATATAAAAAATTTAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGC
* * * **** **
569884 TTTTTGAGAGCTTGAGTAACTATAAATGGACTTTTCTCATTAATGGATGGTTTTTGCTTCACGTT
128 TTTTAGA-AGCTTGAGTGACTATAAATAGACTTTTCTTGCCAATGGATGACTTTTGCTTCACGTT
* ** * * * *
569949 TTTTGAGGCA-A-A--C----AT--TC-AGTTTAACCAAAAATATAAAAAAATTCAACTTGAAAT
192 TCTCAAGGCAGACATTCAAATATAATCTATTTTAACAAAAAATGTAAAAAAATTCAACTTAAAAT
* * * * ** * ***
570003 CAATTATGAGACTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCAAAATCTTAAACCACTATA
257 CAATAATGAGATTATAAAACCATTTAAAACGAGTAATAAGGCTTTCGAAGGCTTGAGTGACTATA
* *
570068 AATTGACTTTTCTTGCTAAT
322 AATGGACTTTTCTTGCCAAT
* * * *
570088 GGATGG-TTTTGGCATCACGTTTCCT-AAGGCAGATATTCAAATATAATGTATTTTAA-TAAAGA
1 GGATGGCTTTT-GCTTCACGTTTTCTGAA-GCAGACATTCAAATATAATCTATTTTAACTAAA-A
* * * ** **
570150 ATATAAAAAAATCAACTTAAAATCAATAATGAGATTATAAATTCATTTAAAGTGAGTAATAAGGC
63 ATATAAAAAATTTAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGC
* * * *
570215 TTTT-GAAGGATTGAGTGACTATAAATGGACTTTCCTTGCCAATGGATGACTTTTGCTTGACGTT
128 TTTTAGAA-GCTTGAGTGACTATAAATAGACTTTTCTTGCCAATGGATGACTTTTGCTTCACGTT
* ** * * * * * *
570279 T-TCCTAGATAAACAGTCAAATATAATCTATTTTAACCATAAATGTAGAAAAATTCAGCTTAAAA
192 TCT-CAAGGCAGACATTCAAATATAATCTATTTTAACAAAAAATGTAAAAAAATTCAACTTAAAA
* * * * ** * *
570343 TCAATTATGCA-ATTATAAAACTATTTAAAGCTAGTAATAAGTTTTTTGAGGGCTTGAGTGACTA
256 TCAATAATG-AGATTATAAAACCATTTAAAACGAGTAATAAGGCTTTCGAAGGCTTGAGTGACTA
** *
570407 TAAATCAACTTTT-TT-CATAAAT
320 TAAATGGACTTTTCTTGC--CAAT
* * * ** * ** * *
570429 GGATGGCTTTTGATTGATG-TTTCCCAAGGCAGATATTCAGTTCTAATATATTTTAACTAAAAAT
1 GGATGGCTTTTGCTTCACGTTTTCTGAA-GCAGACATTCAAATATAATCTATTTTAACTAAAAAT
* * ** *
570493 ATAAAGAAATTTAACTTAAAATCAATAATTAGATTATAAAACCATTTAAAGTGAGTAAAAAGGC-
65 ATAAA-AAATTTAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCT
* * * *** * *
570557 TTTCGAAAGCTTGAGTGACTATAAAT-GAACTTTGCTTACCAACATATGGCTTTTGCTTCATGTT
129 TTTAG-AAGCTTGAGTGACTATAAATAG-ACTTTTCTTGCCAATGGATGACTTTTGCTTCACGTT
* * * * * * *
570621 TCCCAAGGTAAATAGTCAAATATAATCTATTTTAACCATAAATGTAAAAAAATTCAACTTAAAAT
192 TCTCAAGGCAGACATTCAAATATAATCTATTTTAACAAAAAATGTAAAAAAATTCAACTTAAAAT
* * * * * ** * * *
570686 CAATGATGCGATTATAAAACCCTTTAAAGCTAGTAATAAGTTTTTTGAGGGCTTGAATGACTATA
257 CAATAATGAGATTATAAAACCATTTAAAACGAGTAATAAGGCTTTCGAAGGCTTGAGTGACTATA
* *
570751 AATCGA-TTTT-TTTCACAAAT
322 AATGGACTTTTCTTGC-C-AAT
* * ** *
570771 GGATGGCTTTTACTTCACATTTTCTGAGAG-AGACATTCAGTTATAATATATTTTAA-TCAAAAA
1 GGATGGCTTTTGCTTCACGTTTTCTGA-AGCAGACATTCAAATATAATCTATTTTAACT-AAAAA
* * * * * *
570834 TATAAAAACAATTTAACTTAAAATCAATTATAAGACTATAAAACCATTTGAAGCGAGTTAGAAGG
64 TAT-AAAA-AATTTAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGG
* * * ** * * * *
570899 CTTTT-GAAGGCTTGAGCGACAAGAAATAGACTTTTCTTATCAATAGATGGCTTTTGCTTTATGT
127 CTTTTAGAA-GCTTGAGTGACTATAAATAGACTTTTCTTGCCAATGGATGACTTTTGCTTCACGT
* * * * ** * * *
570963 TTAAT-GAGG-TGAACATTTAGGTATAATATATTTTAATC-AAAAATGTAAAAAAGTTCAACTTG
191 TT-CTCAAGGCAG-ACATTCAAATATAATCTATTTTAA-CAAAAAATGTAAAAAAATTCAACTTA
* * ** ** *
571025 AAATAAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAAACTTTTGAAGGCTTGAGTGAC
253 AAATCAATAATGAGATTATAAAACCATTTAAAACGAGTAATAAGGCTTTCGAAGGCTTGAGTGAC
571090 TATAAATGGACTTTTCTTGCCAAT
318 TATAAATGGACTTTTCTTGCCAAT
* * * * * * *
571114 GAATGGCTTTTGCTTTATGTTTTAC-G-AGACAAACAGTCAAATATAATCTATTTTAACCAAAAT
1 GGATGGCTTTTGCTTCACGTTTT-CTGAAG-CAGACATTCAAATATAATCTATTTTAACTAAAAA
* * * * * * * *
571177 TATAAAAAAAATCAGCTTAAAATCAATTATGCGATTAT-AAACGATTTAAAACTAGTAATAA-GT
64 TAT-AAAAAATTTAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGC
* * * * * *
571240 TTTTTGAGGTCTTAAGTGACTATAAATTA-ACTTTTTCTAT--AAATGGATGGCTTTTGCTTTAC
128 TTTTAGAAG-CTTGAGTGACTATAAA-TAGAC-TTTTCT-TGCCAATGGATGACTTTTGCTTCAC
* * * ** * *
571302 GTTTC-CTTAGGTAGACTTTCAGTTATAATATATTTTAACAAAAAATGTAAAAAAGTTCAACTTA
189 GTTTCTC-AAGGCAGACATTCAAATATAATCTATTTTAACAAAAAATGTAAAAAAATTCAACTTA
* * *
571366 AAGTCAATAATAAGATTATAAAACCATTTAAAGCG-GCTAATAAGGCTTTCGAAGGCTTTTGAAG
253 AAATCAATAATGAGATTATAAAACCATTTAAAACGAG-TAATAAGGCTTT------C----GAAG
* * *
571430 GCTTGAGTGACTATAAATAGACTTTTTTTACCAAT
307 GCTTGAGTGACTATAAATGGACTTTTCTTGCCAAT
* * * * * * * * * *
571465 GGATGGCTTTTGCTTGACG-TTTCTTAAGGTAAATAGTT-AAATACAATTTGTTTTAACCATAAA
1 GGATGGCTTTTGCTTCACGTTTTCTGAA-GCAGACA-TTCAAATATAATCTATTTTAACTAAAAA
* * * *
571528 TGTAGAAAAATTCT-ACTTAAAATCAATTATGTGGTTATAAAACCATTTAAAGCTAGTAATAA--
64 TATA-AAAAATT-TAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGG
* * * * * * *
571590 CTTTTTTGAGGGCTTGAGTGACTATAAATCGACTTTTCTCT-CAAATGAATGGCTTTTGCTTGAC
127 C-TTTTAGA-AGCTTGAGTGACTATAAATAGACTTTTCT-TGCCAATGGATGACTTTTGCTTCAC
* * ** * * * * *
571654 GTTTC-CTAAGGCAAACATTTAGTTATAATATATTTTAACCAAAATTATAAAGAAATTCAACTTA
189 GTTTCTC-AAGGCAGACATTCAAATATAATCTATTTTAACAAAAAATGTAAAAAAATTCAACTTA
* * * * * **
571718 AAATCTATAATTAGA-T-TAAAATCATTTAAAGCGAGTAATAAGGCTTTCTAAAACTTGAGTGAC
253 AAATCAATAATGAGATTATAAAACCATTTAAAACGAGTAATAAGGCTTTCGAAGGCTTGAGTGAC
* * *
571781 TATAAATGAACTTTTTTTGGCAAT
318 TATAAATGGACTTTTCTTGCCAAT
* * * * * * * *
571805 GGATGGCTTTTTCTTCATG-GTTCTCAAGGGAAACAATCAAATATAATCTGTTTTAACTAAAAAT
1 GGATGGCTTTTGCTTCACGTTTTCTGAA-GCAGACATTCAAATATAATCTATTTTAACTAAAAAT
* * * * * *
571869 GTGAAAGAATTCAACTTAAAATTC-GTAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGC
65 AT-AAAAAATTTAACTTAAAA-TCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGC
* * * ** * * * *
571933 -TTTCGAAGGCTTGAATGAATATAAATAGACTTTTCTTATCGATGGATGGCTTTTGCTTTATGTT
128 TTTTAGAA-GCTTGAGTGACTATAAATAGACTTTTCTTGCCAATGGATGACTTTTGCTTCACGTT
* * ** * *
571997 T-TCTGAGGCAGACATTTAGTTATAATTTATTTTAATC-ACAAATGTAAAAAAATTCAACTTAAA
192 TCTC-AAGGCAGACATTCAAATATAATCTATTTTAA-CAAAAAATGTAAAAAAATTCAACTTAAA
* * * * * * *
572060 ATCAATTATGATACTATAAAACCATTCAAAGA-GAGTAATAACGCTTT-TAATGTCTTGAGTGAC
255 ATCAATAATGAGATTATAAAACCATTTAAA-ACGAGTAATAAGGCTTTCGAA-GGCTTGAGTGAC
*
572123 TTTAAATGGACTTTTCTTGCCAAT
318 TATAAATGGACTTTTCTTGCCAAT
* * * * * * ** * * *
572147 GGATGGCTTTCGCTTCATG-TTGCTTGAGGTAGACATTTACTTATAATATGTTTTAACCAAAAAT
1 GGATGGCTTTTGCTTCACGTTTTC-TGAAGCAGACATTCAAATATAATCTATTTTAACTAAAAAT
* * * * *
572211 GTAAAAAAATTCAACTTAAAATCAATTACGAGATTATAAAATCATTTAAAGCAAGTAATAAAGC-
65 AT-AAAAAATTTAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCT
* * * * * * * * * **
572275 TTTCGAAGGTTTGAGTGACTATAAATGGAATTTTTTTACAAATGGATGGCTTTTGCTTTATATTT
129 TTTAGAA-GCTTGAGTGACTATAAATAGACTTTTCTTGCCAATGGATGACTTTTGCTTCACGTTT
* ** * * *
572340 CT-GAGGCTA-ACATTCAGCTATAAT-AAGTTTTAACTAAAAATGTAAAAATATTCAACTTAAAA
193 CTCAAGGC-AGACATTCAAATATAATCTA-TTTTAACAAAAAATGTAAAAAAATTCAACTTAAAA
* ** ** * * ** *
572402 TCAATCACAAGATTATAAAACCATTTAAAGGGAGCAATAAGTCTTTTAAAGGCTTGAATGACTAT
256 TCAATAATGAGATTATAAAACCATTTAAAACGAGTAATAAGGCTTTCGAAGGCTTGAGTGACTAT
** *
572467 AAATAAATTTTTCTTGCCAAT
321 AAATGGACTTTTCTTGCCAAT
* * * * ** * * *
572488 GGAGGGCTTCTGCTTCACG-TTTCTCAA-CTTAGACATTAAAATATAATCCGTTTTACCCAAATA
1 GGATGGCTTTTGCTTCACGTTTTCTGAAGC--AGACATTCAAATATAATCTATTTTAACTAAAAA
* * * * * * ** *
572551 TGTACAAAAAATCAACTTAAAATCAATAATGAAACTATAAAATTATTTAAAGCGAGTAATAAGGC
64 TATA-AAAAATTTAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGC
* * * * *
572616 TATTTA-AGGTTTGAGTGACTATAAATGGACTTTTCTTACCAATAGATGACTTTTGCTTCACGTT
128 T-TTTAGAAGCTTGAGTGACTATAAATAGACTTTTCTTGCCAATGGATGACTTTTGCTTCACGTT
* * ** * * *
572680 TCAT-GAGGCAAACATTCAGTTATAATATA-TTTAATAAAAAATATAAAAAAATTCAACTTAAAA
192 TC-TCAAGGCAGACATTCAAATATAATCTATTTTAACAAAAAATGTAAAAAAATTCAACTTAAAA
* *
572743 TCAATTATAAGATTAT-AAACCATTTAA
256 TCAATAATGAGATTATAAAACCATTTAA
572770 CGAGAATAAT
Statistics
Matches: 9464, Mismatches: 2180, Indels: 1467
0.72 0.17 0.11
Matches are distributed among these distances:
310 3 0.00
311 20 0.00
312 107 0.01
313 7 0.00
314 1 0.00
316 3 0.00
318 1 0.00
320 3 0.00
321 116 0.01
322 1 0.00
324 3 0.00
328 54 0.01
329 172 0.02
330 217 0.02
331 211 0.02
332 286 0.03
333 139 0.01
334 92 0.01
335 5 0.00
336 6 0.00
337 93 0.01
338 324 0.03
339 298 0.03
340 467 0.05
341 1638 0.17
342 2386 0.25
343 915 0.10
344 234 0.02
345 32 0.00
346 5 0.00
347 10 0.00
348 20 0.00
349 17 0.00
350 49 0.01
351 146 0.02
352 170 0.02
353 30 0.00
354 15 0.00
355 17 0.00
356 13 0.00
357 8 0.00
358 1 0.00
359 11 0.00
360 17 0.00
361 10 0.00
362 5 0.00
363 7 0.00
364 7 0.00
365 5 0.00
366 24 0.00
367 10 0.00
368 25 0.00
369 16 0.00
370 17 0.00
371 28 0.00
372 28 0.00
373 39 0.00
374 18 0.00
375 24 0.00
376 20 0.00
377 13 0.00
378 30 0.00
379 8 0.00
380 189 0.02
381 21 0.00
382 113 0.01
383 233 0.02
384 5 0.00
385 12 0.00
386 12 0.00
387 12 0.00
388 8 0.00
389 8 0.00
390 5 0.00
391 2 0.00
393 9 0.00
394 13 0.00
395 12 0.00
396 14 0.00
397 4 0.00
398 12 0.00
399 10 0.00
400 12 0.00
401 7 0.00
402 6 0.00
403 16 0.00
404 4 0.00
405 1 0.00
406 1 0.00
407 2 0.00
408 8 0.00
409 1 0.00
410 6 0.00
411 3 0.00
412 6 0.00
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.35
Consensus pattern (341 bp):
GGATGGCTTTTGCTTCACGTTTTCTGAAGCAGACATTCAAATATAATCTATTTTAACTAAAAATA
TAAAAAATTTAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCTTT
TAGAAGCTTGAGTGACTATAAATAGACTTTTCTTGCCAATGGATGACTTTTGCTTCACGTTTCTC
AAGGCAGACATTCAAATATAATCTATTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATCAAT
AATGAGATTATAAAACCATTTAAAACGAGTAATAAGGCTTTCGAAGGCTTGAGTGACTATAAATG
GACTTTTCTTGCCAAT
Found at i:561683 original size:171 final size:171
Alignment explanation
Indices: 561427--561876 Score: 471
Period size: 171 Copynumber: 2.6 Consensus size: 171
561417 GTAAACAGTT
* * *
561427 AAATATAATTTGTTTTAA-TCAAAATTGTAAAAAAATTTAACTTAAAATTAATTATGC-GATTAT
1 AAATATAATATGTTTTAACT-AAAAATGTAAAAAAATTTAACTTAAAATCAATTAT-CAGATTAT
* * *
561490 AAAACCATGTAAAGCTAGTAATAAGTTTTTTGAGGGCTTGAGTGATTATAAATTGAT-TTTTCGC
64 AAAACTATTTAAAGCTAGTAATAAGTTTTTTGAGGGCTTGAGTGATTATAAATAG-TCTTTTCGC
* * * * * * ** * *
561554 GTAAATGTATGGCTTTTGCTTTATGTTTCTCAAGGCAGACACTC
128 GCAAACGGATGGCTTATACTTCACATTTATCAAGGCAAACACTC
** * * *
561598 ACTTATAATATATTTTAACTAAAAATGTAAAAAAATTTAACTTAAAATCAATAATTAGATTATAA
1 AAATATAATATGTTTTAACTAAAAATGTAAAAAAATTTAACTTAAAATCAATTATCAGATTATAA
* ** * * ** *
561663 AACTATTTAAAGCGAGTAATAAGGCTTTCGAAGGCTTGAGTGATTATAAATAGTCTTTTCTTGCC
66 AACTATTTAAAGCTAGTAATAAGTTTTTTGAGGGCTTGAGTGATTATAAATAGTCTTTTCGCGCA
* *
561728 AACGGATGGCTTATACTTCACATTTATCGAGGCAAACAGTC
131 AACGGATGGCTTATACTTCACATTTATCAAGGCAAACACTC
* * ** * *
561769 AAATATAATCTGTTTTAACCAAAACCG-AAAAAACATTCAACTTGAAATCAATTATGCA-ATTAT
1 AAATATAATATGTTTTAACTAAAAATGTAAAAAA-ATTTAACTTAAAATCAATTAT-CAGATTAT
561832 AAAACTATTTAAAGCTAGTAATAAGTTTTATT-AGGGCTTGAGTGA
64 AAAACTATTTAAAGCTAGTAATAAGTTTT-TTGAGGGCTTGAGTGA
561877 CAATAAATCG
Statistics
Matches: 226, Mismatches: 47, Indels: 12
0.79 0.16 0.04
Matches are distributed among these distances:
170 7 0.03
171 216 0.96
172 3 0.01
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.36
Consensus pattern (171 bp):
AAATATAATATGTTTTAACTAAAAATGTAAAAAAATTTAACTTAAAATCAATTATCAGATTATAA
AACTATTTAAAGCTAGTAATAAGTTTTTTGAGGGCTTGAGTGATTATAAATAGTCTTTTCGCGCA
AACGGATGGCTTATACTTCACATTTATCAAGGCAAACACTC
Found at i:562081 original size:209 final size:211
Alignment explanation
Indices: 561682--562103 Score: 482
Period size: 209 Copynumber: 2.0 Consensus size: 211
561672 AAGCGAGTAA
* * *
561682 TAAGGCTTTCGAAGGCTTGAGTGATTATAAATAGTCTTTTCTTGCCAACGGATGGCTTATACTTC
1 TAAGGCTTTCGAAGACTTGAGTGATTATAAATAGACTTTTCTTACCAACGGATGGCTTATACTTC
* * *
561747 ACATTTATCGAGGCAAACAGTCAAATATAATCTGTTTTAACCAAAACCGAAAAAACATTCAACTT
66 ACATTCATCGAGGCAAACAGTCAAATATAATCTATTTTAA-CAAAAACGAAAAAACATTCAACTT
* * * * * * * *
561812 GAAATCAATTATGCAATTATAAAACTATTTAAAGCTAGTAATAAGTTTTATTAGGGCTTGAGTGA
130 AAAATCAATAATGCAACTATAAAACCATTTAAAGCAAGTAATAAGCTTTATGAAGGCTTGAGTGA
* *
561877 CAATAAATCGAGTTTTC
195 CAATAAATAGACTTTTC
* * * *
561894 TAAGGCTTTC-AATGACTTGAGTGATTATAAATGGACTTTTC-TACCAATGGATGGCTTTTGCTT
1 TAAGGCTTTCGAA-GACTTGAGTGATTATAAATAGACTTTTCTTACCAACGGATGGCTTATACTT
* * * * * *
561957 CA-AGTTCCTTGAGGCAGAGATTCAAATATAATCTATTTTAA-AAAAATGTAAAAAA-ATTCAA-
65 CACA-TTCATCGAGGCAAACAGTCAAATATAATCTATTTTAACAAAAACG-AAAAAACATTCAAC
562018 TCTAAAATCAATAATG-AGACTATAAAACCATTTAAAGCAAGTAATAAAGCTTT-TGAAGGCTTG
128 T-TAAAATCAATAATGCA-ACTATAAAACCATTTAAAGCAAGTAAT-AAGCTTTATGAAGGCTTG
*
562081 AGTGACTATAAATAGACTTTTC
190 AGTGACAATAAATAGACTTTTC
562103 T
1 T
562104 TGTCAATGGA
Statistics
Matches: 177, Mismatches: 27, Indels: 15
0.81 0.12 0.07
Matches are distributed among these distances:
208 2 0.01
209 75 0.42
210 13 0.07
211 52 0.29
212 35 0.20
ACGTcount: A:0.37, C:0.14, G:0.15, T:0.33
Consensus pattern (211 bp):
TAAGGCTTTCGAAGACTTGAGTGATTATAAATAGACTTTTCTTACCAACGGATGGCTTATACTTC
ACATTCATCGAGGCAAACAGTCAAATATAATCTATTTTAACAAAAACGAAAAAACATTCAACTTA
AAATCAATAATGCAACTATAAAACCATTTAAAGCAAGTAATAAGCTTTATGAAGGCTTGAGTGAC
AATAAATAGACTTTTC
Found at i:562216 original size:171 final size:170
Alignment explanation
Indices: 561909--567579 Score: 2715
Period size: 171 Copynumber: 33.1 Consensus size: 170
561899 CTTTCAATGA
* * ** * **
561909 CTTGAGTGATTATAAATGGACTTTTC-TACCAATGGATGGCTTTTGCTTCAAGTTCCTTGAGGCA
1 CTTGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTTTTGAGGCA
* * * *
561973 GAGATTCAAATATAATCTATTTTAA--AAAAATGTAAAAAAATTCAA-TCTAAAATCAATAATGA
66 AACATTCAAATATAATCTATTTTAACTAAAAATATAAAAAAATTCAACT-TAAAATCAATTATGA
* *
562035 GACTATAAAACCATTTAAAGCAAGTAATAAAGCTTTTGAAGG
130 GATTATAAAACCATTTAAAGCGAGTAAT-AAGCTTTTGAAGG
*
562077 CTTGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTTTACGTTTTTTGAGGCA
1 CTTGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTTTTGAGGCA
* * * * * *
562142 AACAGTCAAATATGATCTGTTTTAACCAAAAATGTAAAAAAATTCAACTTAGAATCAATTATGAG
66 AACATTCAAATATAATCTATTTTAACTAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAG
** ** *
562207 ATTATAAAACCATTTATGGCTCGTAAT--GTTTTTTGAAGG
131 ATTATAAAACCATTTAAAGCGAGTAATAAG-CTTTTGAAGG
* * * * * *
562246 CTTTAGTGACTATAAATAGACTTTTCTT-ACTAATGGATAGCTTTTGCTTTATGATTCTTTGAGG
1 CTTGAGTGACTATAAATAGACTTTTCTTGTC-AATGGATGGCTTTTGCTTCACG-TTTTTTGAGG
* * * * * *
562310 CAGACATT-TAGT-TAATATTATTTTAA-T-AAAATGTAAAAATA-TCAACTTAAAATC------
64 CAAACATTCAAATATAAT-CTATTTTAACTAAAAATATAAAAAAATTCAACTTAAAATCAATTAT
* **
562364 --GATTATAAAACTATTTAAAGCGAGTAATAAGGCTTTCAAAGG
128 GAGATTATAAAACCATTTAAAGCGAGTAATAA-GCTTTTGAAGG
* * * * * ** * * *
562406 CTTAAGTGACTATAATTGGATTTTTCTTG-CCATGGGATGATTTTTGCTTCATGTTTTCTGAAGC
1 CTTGAGTGACTATAAATAGACTTTTCTTGTCAAT-GGATGGCTTTTGCTTCACGTTTTTTGAGGC
* * * * *
562470 AGACATTCAATTATAA-CATATTTTAATTAAAAATATAAAAATATTTAACTTAAAATCAATTATG
65 AAACATTCAAATATAATC-TATTTTAACTAAAAATATAAAAAAATTCAACTTAAAATCAATTATG
* * * *
562534 AGTTTATTAAACCACTTAAAGCAAGTAATAAGGCTTTTAGAA-G
129 AGATTATAAAACCATTTAAAGCGAGTAATAA-GCTTTT-GAAGG
** * * * * * ** * * *
562577 AATGGGTGACAATAAATAGATTTTTCTTGTCAATGAATGACTTTTTTTTTCACG-TTTCTCAAG-
1 CTTGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGC-TTTTGCTTCACGTTTTTTGAGGC
* * * * * * * *
562640 AAGCATCCAAATATAATCTGTTTTAACTAAACATGTAAAAAAATTCAACTTAAAATTAGTAATGA
65 AAACATTCAAATATAATCTATTTTAACTAAAAATATAAAAAAATTCAACTTAAAATCAATTATGA
* *
562705 GATTATAAAACCATTTAAAGCGAGTAATAAGGTTTTCAA--
130 GATTATAAAACCATTTAAAGCGAGTAATAAGCTTTTGAAGG
* * ** * * * **
562744 ----AG-G-CT-TGAATGGACTTTTCTTACCAACGGGTGGCTTTTGCTTCACGTTTCTCTG-GAT
1 CTTGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTT-TTTGAGGC
* * * * * *
562801 AAATAGTAAAATATAATCTGTTTTAA-TCAAAACTATAAAAAAATTTAACTTAAAATCAATTATG
65 AAACATTCAAATATAATCTATTTTAACT-AAAAATATAAAAAAATTCAACTTAAAATCAATTATG
* * * * * *
562865 TGATTATAAAACTATGTAAAGCTAGTAATAAGTTTTTTAAGGG
129 AGATTATAAAACCATTTAAAGCGAGTAATAAGCTTTTGAA-GG
* ** * * * * * * *
562908 CTTGAGTGACTATAAATTA-ATTTTTCCCGTAAATGTATAGTTTTTGCTTCATGTTTCTTAAGGC
1 CTTGAGTGACTATAAA-TAGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTTTTGAGGC
* ** * * * *
562972 AGACATTCACTTATAATATATTTTAACTAAAAATATAAAAAAATTTAACTTAAAATCAATAATTA
65 AAACATTCAAATATAATCTATTTTAACTAAAAATATAAAAAAATTCAACTTAAAATCAATTATGA
* *
563037 GATTATAAAATCATTTAAATCGAGTAATAAAG-TTTTCGAAGG
130 GATTATAAAACCATTTAAAGCGAGTAAT-AAGCTTTT-GAAGG
* * * * * * * *
563079 CTTGAGTGATTATAAATAGTCTTTTCTTG-CAAACGGATGACTTTTACTTCACGTTTCTCGAGGT
1 CTTGAGTGACTATAAATAGACTTTTCTTGTC-AATGGATGGCTTTTGCTTCACGTTTTTTGAGGC
* * * * * *
563143 AAACAGTCAAATATAATCTATTTTAACTAAAACTATAAAAACATTCAGCTTCAAATCAATTATGC
65 AAACATTCAAATATAATCTATTTTAACTAAAAATATAAAAAAATTCAACTTAAAATCAATTATGA
* * * *
563208 GATTATAAAACCATTTAAAGCTAGTAATAAGTTTTTTTAGGG
130 GATTATAAAACCATTTAAAGCGAGTAATAAG-CTTTTGAAGG
* * * ** ** * * *
563250 CTTGAGTGACTATAAATTGACTTTTCTAAGGCTTTCAATGGCTTGAGTGACTATAAATGGACTTT
1 CTTGAGTGACTATAAATAGACTTTTCT-TGTCAATGGATGGCTT--TTG-CT-T-CA-CG--TTT
* ** * * * ** * * * * *
563315 TCTT-A-CCAATGGATGGC--TTTTGCTTCACATTCCTTGAGGC-AAATAT-TCATATATAA-TC
57 T-TTGAGGCAA-ACAT-TCAAATAT-AATC-TATT--TT-A-ACTAAAAATAT-A-AAAAAATTC
** ** ** * * * * * * * *
563373 TATTTTAACAAAAAATGTAAAAAAATTCAATCTAAAATCA-TTAATGAGACTATAAAACCATTT-
111 -AACTTAA-AATCAAT-T-ATGAGATT--A--TAAAACCATTTAAAGCGAGTA-ATAAGCTTTTG
*
563436 AAAG
167 AAGG
** * * * ** * *** * * ** *** *
563440 CAAGTAATAAGGCTTTTGA-AGGC-TTGAGTGACCATAAATGGACTTTT-CTT---GTGAATGGA
1 CTTG-AGT--GACTATAAATAGACTTTTCTTGTCAATGGATGG-CTTTTGCTTCACGTTTTTTGA
** * * * **** ** ***** *
563499 TGGC---TTTTGCCACATGT-TTCTTGAGGCAAACATTCAAATATAATTTTTTTAACCAAAAATG
62 -GGCAAACATT--CAAATATAATC-T-ATTTTAAC-TAAAAATATAAAAAAATT---C--AACT-
* * * * * * * * * * * *
563560 TAAAA-CAA-TCT-A-ACT-TAAAATCA-ATGATGAGATTATAAAACCATTTAAAGTG
115 TAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTA-ATAAGCTTTTGAAG-G
* * * ** * * * ** *
563612 AGTAATAAG-G-CTTTCTATAGA---TTCAGTGACTATAAATGGACTTTT-CTTACTTATGGATG
1 -CT--TGAGTGACTATAAATAGACTTTTC-TTGTCAATGGATGG-CTTTTGCTT-C------A-C
* * * ** ** * * **** ** * *
563671 GCTTTTACTTCACGTATCCTAAGGCAGATATTCAAATATAATTTGTTTTAACCAAAAATGCAAAA
53 G-TTTT--TTGAGGCAAAC--ATTCAAATA-T--AATCT-ATTTTAACTAAAAATATA---AAAA
* * * *
563736 ACATTCAAGTTAAAATCAATTATGAGATTATCAAATCATTTAAAAG-GAGTAATAAGGCTTTCGA
106 A-ATTCAACTTAAAATCAATTATGAGATTATAAAACCATTT-AAAGCGAGTAATAA-GCTTTTGA
**
563800 AAA
168 AGG
** * * * * * * * **
563803 AATAAGTTACTATAAATAGACTTTTCTTG-CTAATGAATAG-TTTTTCTTTTACGTTTCTCAAGG
1 CTTGAGTGACTATAAATAGACTTTTCTTGTC-AATGGATGGCTTTTGC-TTCACGTTTTTTGAGG
* * * * * * * * * * *
563866 TAGACATTCTAATATAATCTGTTTTAATTAAAAATGTAAAAACATTTAACTTAAAATCAGTAATA
64 CAAACATTCAAATATAATCTATTTTAACTAAAAATATAAAAAAATTCAACTTAAAATCAATTATG
* * * ** **
563931 AGATTATAAAACTATTTAAAGTGAGTAATAAGGTTTCCAAAAA
129 AGATTATAAAACCATTTAAAGCGAGTAATAAGCTTT-TGAAGG
* * * * * **
563974 CTTGAGTGACTATAAATAGACTTTTCTTGCCAATGGATGG-TTTTCCTTAATGTTTATCAAGGCA
1 CTTGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTTTTGAGGCA
** * * * *
564038 AACATTCAGTTATCATATATTTTAA-TAAAAAATATAAAAAAATTCAACTTAAAATCAAGTCTGA
66 AACATTCAAATATAATCTATTTTAACT-AAAAATATAAAAAAATTCAACTTAAAATCAATTATGA
* ** * **
564102 GATCATAAAAGAATTTAAAGCAAGTAATAAGGCTTTCAAAGG
130 GATTATAAAACCATTTAAAGCGAGTAATAA-GCTTTTGAAGG
* * * * **
564144 CTTAAGTGACTAGAAATAGACTTATT-TTGTCAATGGAGGGCTTTTGCTTCACGTTTGTCAAGGC
1 CTTGAGTGACTATAAATAGACTT-TTCTTGTCAATGGATGGCTTTTGCTTCACGTTTTTTGAGGC
* * * * * *
564208 AGACATTGAAATATAATCTGTTTTAA-TAAAGAATATAAAACAATCCAACTCAAAATCAATTATG
65 AAACATTCAAATATAATCTATTTTAACTAAA-AATATAAAAAAATTCAACTTAAAATCAATTATG
* * ** * * *
564272 AGATTATAAAACCATTTAACGCAACCAATAGGGC-TTTCAATAG
129 AGATTATAAAACCATTTAAAGCGAGTAATA-AGCTTTTGAA-GG
* * * ** * * *
564315 CTTGAATGAGTATAAATAGACTTTTCATACCAATGGATGGCTTTTGCTTCATGTTTCTTGAGACA
1 CTTGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTTTTGAGGCA
* * * * *
564380 GACATTCAAATATAATCTGTTTTAAAC-AAAAATA-AAAAAAA-T-GATTTAAAATCAATAATGA
66 AACATTCAAATATAATCTATTTT-AACTAAAAATATAAAAAAATTCAACTTAAAATCAATTATGA
* * * *
564441 GATTAGAAAACCATTTAAAGTGAGTAACAAGGCTTTTGAAGA
130 GATTATAAAACCATTTAAAGCGAGTAATAA-GCTTTTGAAGG
* * * * * * * ** *
564483 CTTAAGTGACTATAAATAGAGTTTTCTTGCCAATTGATGGCTTTTGCTTTAAGTTTCTCAAGGTA
1 CTTGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTTTTGAGGCA
* * * * *
564548 AACAATCAAAGATAATCTGTTTTAACCAAAAATACT-AAAAAATTCAACTTAAAATCAGTTATGA
66 AACATTCAAATATAATCTATTTTAACTAAAAATA-TAAAAAAATTCAACTTAAAATCAATTATGA
** * * * **
564612 GATTATAAAATTATTTAAACCTAGTAATAAGTTTTTAGTGGG
130 GATTATAAAACCATTTAAAGCGAGTAATAAGCTTTT-GAAGG
* ** * * * * *
564654 CTTGAGTGACTATAAAT-GTCTTTTC-TCACAAATAGATTGCTTTTGCTTCATGTTTTTTTAGGT
1 CTTGAGTGACTATAAATAGACTTTTCTTGTC-AATGGATGGCTTTTGCTTCACGTTTTTTGAGGC
* * ** * * *
564717 AGATATTCAGTTATAATATATTTTAAGC-AAAAA-AGTAAAAAAATTTAACTTGAAATCAATTAT
65 AAACATTCAAATATAATCTATTTTAA-CTAAAAATA-TAAAAAAATTCAACTTAAAATCAATTAT
*
564780 GAGATTATAAAACCATTTAAAG-GAAGTAATAAGGCTTATGAAGG
128 GAGATTATAAAACCATTTAAAGCG-AGTAATAA-GCTTTTGAAGG
* * ** * ** **
564824 CTTAAGTGACTATATATAGACTTTTCTTGTCAATGGATGGCTTTTGCTTCAAATTTCTCAAGGTG
1 CTTGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTTTTGAGGCA
* * * * * * * *
564889 CACATTCAAATATAATCTGTTTTAACAAAAAATGTTAGAAAA-TCTAACTTAAAATCTATTACGA
66 AACATTCAAATATAATCTATTTTAACTAAAAATATAAAAAAATTC-AACTTAAAATCAATTATGA
* * * * *
564953 GATTATAAAACCATCTAAGGGGAGAAATAAGCCTTTCGAAGG
130 GATTATAAAACCATTTAAAGCGAGTAATAAG-CTTTTGAAGG
* * * *
564995 CTTGAGTTACTATAAATGGA-TTTTCTTGTCAATGGAGGGCTTTTGCTTCACGTTTCTTGAGGCA
1 CTTGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTTTTGAGGCA
* * * * * * * *
565059 GACATTCAAATATAATTTGTTTTAACAAAAAATGTAAAATAGTTCAACTTAAAATCAATTACGAG
66 AACATTCAAATATAATCTATTTTAACTAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAG
* *
565124 ATTATAAAACCATTTAAAGCGAGTAATAAGGC-TTTCAATGA
131 ATTATAAAACCATTTAAAGCGAGTAATAA-GCTTTTGAA-GG
* * *** * ** *
565165 CTTGAGTGACTATAAATGGACTTTTCTT-ACTAATGGATAATTTTTACTTCACGTTTCCTAAGGC
1 CTTGAGTGACTATAAATAGACTTTTCTTGTC-AATGGATGGCTTTTGCTTCACGTTTTTTGAGGC
* * * * *
565229 AGACATTCAAATATAATCTATTTTAAC-AAAAAAATGTAAAAAATTCAACTTAAAATCAATAATC
65 AAACATTCAAATATAATCTATTTTAACTAAAAATAT-AAAAAAATTCAACTTAAAATCAATTATG
* * * * **
565293 AGATTATAAAACTATTTAAAGCAACTAATAAAGCTATCAAAGG
129 AGATTATAAAACCATTTAAAGCGAGTAAT-AAGCTTTTGAAGG
* * * * * **** *
565336 CTTGATTGACTACAAATAAACTTTTCTTGTCAATGGGTGGCTTTTGCTTCATGTTTCCCAAGGTA
1 CTTGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTTTTGAGGCA
* ** * * * *
565401 GACATTCAGTTATAATTTAATTTAACCAAAAATATAAAAAAAAATT-AACTTAAAATGAATTATG
66 AACATTCAAATATAATCTATTTTAACTAAAAATAT--AAAAAAATTCAACTTAAAATCAATTATG
* * *
565465 AGACTATAAAACCATTTAAAGCAAGTAATAAGGCTTTCGAAGG
129 AGATTATAAAACCATTTAAAGCGAGTAATAA-GCTTTTGAAGG
** * * * * ** * * * * *** **
565508 CTTGAGTGACTGGAAATGGATTTTTTTTGCCAATATATGTCTTTTACTTTATGTTTTACAAGGTG
1 CTTGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTTTTGAGGCA
* * ** * * * * *
565573 AATATTTAGTTATAATATATTTTAATTAAAAATATAAAGAAGTTCAACTTAAAATCAATTATAAG
66 AACATTCAAATATAATCTATTTTAACTAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAG
* ** * *
565638 ATTATAAAACTC-TTGAAAGTAAGTAATAAGGCTTTCGAACAG
131 ATTATAAAAC-CATTTAAAGCGAGTAATAA-GCTTTTGAA-GG
* ** * * * **
565680 -TTGAGTGACTATAAATAGACCTTTCTTACCAATGGGTAGCTTTTGCTTCACATTTCCTGAAGG-
1 CTTGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTTTTG-AGGC
* * ** * * * *
565743 AAATAGTCAAATATAATCTGCTTTAACCAAAAATGTAAAACAATTCAACTTAAAATCAATTATAA
65 AAACATTCAAATATAATCTATTTTAACTAAAAATATAAAAAAATTCAACTTAAAATCAATTATGA
** * * * *
565808 GATTATATGATCATTTAAAGAGGGTGATAAGGCTTTTGAAGG
130 GATTATAAAACCATTTAAAGCGAGTAATAA-GCTTTTGAAGG
* * * * * * *
565850 CTTAAATGACTATAAATGGACTTTTCATGTCAATGGATGACTTTTGCTTCAC-TTTTCTTGAAGT
1 CTTGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTT-TTGAGGC
** * * * * * ** * * **
565914 GTACATTCATATATAATTTGTTTTAA-TCAAACATGTAAAAACTTTTAACTTAATATTTATTATG
65 AAACATTCAAATATAATCTATTTTAACT-AAAAATATAAAAAAATTCAACTTAAAATCAATTATG
* * * *
565978 ATATTATAAAACCATTTAAAGGGAGAAATAAGCCTTTTAAAGG
129 AGATTATAAAACCATTTAAAGCGAGTAATAAG-CTTTTGAAGG
* ** * * * *
566021 CTTGAGTGACTATAAATAGATTTTTCTTACCAATGGAGGGTTTTTGCTTCACGTTTCTTGAGACA
1 CTTGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTTTTGAGGCA
* * * * * ** **
566086 GACATTCATATATAATCTGTTTTAACCAAAAATGTAAAGTAATTCAACTTAAAATCAATTGCGAG
66 AACATTCAAATATAATCTATTTTAACTAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAG
* * * *
566151 AATATAAAACTATTTAAATCGAGTAATAAGGC-TTTCAATGG
131 ATTATAAAACCATTTAAAGCGAGTAATAA-GCTTTTGAA-GG
* * * * * * *
566192 CTTGAGTGACTATAAAT-GAACTTTTCTTGCCAATGGATAGTTTTTACTTTACGTTTTCTAAGGC
1 CTTGAGTGACTATAAATAG-ACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTTTTGAGGC
* * *
566256 AGACATTCAAATATAATCTATTTTAACTAAAAA-AGTAAAAAACTTCAACTTAAAACCAA-TAGT
65 AAACATTCAAATATAATCTATTTTAACTAAAAATA-TAAAAAAATTCAACTTAAAATCAATTA-T
*** * * *
566319 GAGATTATAAAACCATTTAAATTTAGTAATAAGTCTATCGAAGA
128 GAGATTATAAAACCATTTAAAGCGAGTAATAAG-CTTTTGAAGG
* * * * * *** **
566363 CTTGAATGACTATAAATGGACTTTTGTTGTCAAGGGATGGATTTTGCTTCACGTTTTCCAAGATA
1 CTTGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTTTTGAGGCA
*** * * * * *
566428 GGTATTCAAGTATAATTTATTTTAATTAGAAATGTAAAAAAATTCAACTTAAAATCAATTATGAG
66 AACATTCAAATATAATCTATTTTAACTAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAG
* * * **
566493 ATCATAAAACAATTTAAAGCAAGTAATAAGGCTTTCAAAGG
131 ATTATAAAACCATTTAAAGCGAGTAATAA-GCTTTTGAAGG
* * * * * *
566534 CTTGAGTGACTATAAATGGACTTTTCTT-ACTAATGGATAGTTTTTGCTTCATGTTTCTTGAGGC
1 CTTGAGTGACTATAAATAGACTTTTCTTGTC-AATGGATGGCTTTTGCTTCACGTTTTTTGAGGC
* * * * * * * *
566598 AGACATTCAAATATAATTTATTTGAACCAAAAGTGTAGAAAAATTCAATTTAAAA-CTAA-TAGT
65 AAACATTCAAATATAATCTATTTTAACTAAAAATATAAAAAAATTCAACTTAAAATC-AATTA-T
* * * * * *
566661 GAGATAATAAAACAATTTAAAGTGAGTAATAAGGCTATCGACGG
128 GAGATTATAAAACCATTTAAAGCGAGTAATAA-GCTTTTGAAGG
* * * * * *
566705 CTTGAGTGACTATAAATGGATTTTTCTTGTCGATGGATGAG-TTTTGCTTCACGTTTCTCGAGGT
1 CTTGAGTGACTATAAATAGACTTTTCTTGTCAATGGATG-GCTTTTGCTTCACGTTTTTTGAGGC
* * ** * *
566769 AGACATTTAGTTATAATTTATTTTAA-TAAAAAAAGTAAAAAAAAATTCAACTTAAAATCAATTA
65 AAACATTCAAATATAATCTATTTTAACT--AAAAA-TATAAAAAAATTCAACTTAAAATCAATTA
* *
566833 TGAGATTATAAAACTATTTAAAGCGAGTAATAAGGCTTTCGAAGG
127 TGAGATTATAAAACCATTTAAAGCGAGTAATAA-GCTTTTGAAGG
* * * * * * ** *
566878 CTTGAGTGACCATAAATGGACTTTTCTTGCCAACGGATGGCATTTGCTTCATGTTTCCTGAGGTA
1 CTTGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTTTTGAGGCA
* * * * * * * *
566943 AATAGTCAAATATAACCT-GTTTAACTATAAATGTAAAAAAATTAAACTTAAAATCAATTATGCG
66 AACATTCAAATATAATCTATTTTAACTAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAG
* *
567007 ATTATAAAACCATTTAAAGCTAGTAATAAGTCTTTTGAGGG
131 ATTATAAAACCATTTAAAGCGAGTAATAAG-CTTTTGAAGG
** * * * ** * * ** *
567048 CTTGAAAGACTAGAAGTTGA-TTTTC-TCACAAATAGATGGTTTTTGCTTCA-AATTTTCGAAGG
1 CTTGAGTGACTATAAATAGACTTTTCTTGTC-AATGGATGGCTTTTGCTTCACGTTTTTTG-AGG
* * * * * *
567110 TAGATATTCAATTATAATATATTTTAA-TCAAAAATATAAAAAAATACAACTTAAAATCAATTAT
64 CAAACATTCAAATATAATCTATTTTAACT-AAAAATATAAAAAAATTCAACTTAAAATCAATTAT
* * * * **
567174 GAGATTATAAAACTATTTGAAGCAAGTAATAAGGCTATCAAAGG
128 GAGATTATAAAACCATTTAAAGCGAGTAATAA-GCTTTTGAAGG
* * * * * * * ** *
567218 CTTGAGAGACTATAAATGGACTTTTATTGTCAATGGATGGCTTATCCTTCACATTTCTCAAGGTA
1 CTTGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTTTTGAGGCA
* * ** *
567283 AACATTC--A-GTAATATATTTTAAAGAAAAATAT-AAAAAATTTAACTTAAAATCAATTATGAG
66 AACATTCAAATATAATCTATTTTAACTAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAG
** * * * *
567344 ACAAAAAAACTATTTAAAGCAAGTAATAAGGTTTTTGAAGG
131 ATTATAAAACCATTTAAAGCGAGTAATAA-GCTTTTGAAGG
* * * * ** * *
567385 CTTGAGTGACTATAAATGGACTTTTCTTGTTAATGGATGGCTTTAGCTTCATGTTTCCTAAGACA
1 CTTGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTTTTGAGGCA
* * * * *
567450 AATAGTCAAATATAATCTATTTTAGC-AAAAACTATAGAAAAATTCAACTTAAAATCAATTA-CA
66 AACATTCAAATATAATCTATTTTAACTAAAAA-TATAAAAAAATTCAACTTAAAATCAATTATGA
* * * *
567513 TGATTATAAAACCATTTAAAGCTAGTAATAAGTTTTTTTAGGG
130 -GATTATAAAACCATTTAAAGCGAGTAATAAG-CTTTTGAAGG
* *
567556 CTCGAGTGACTATAAATCGACTTT
1 CTTGAGTGACTATAAATAGACTTT
567580 ACTAAGGCTT
Statistics
Matches: 4190, Mismatches: 1061, Indels: 501
0.73 0.18 0.09
Matches are distributed among these distances:
158 23 0.01
159 27 0.01
160 80 0.02
161 93 0.02
162 14 0.00
163 13 0.00
166 12 0.00
167 134 0.03
168 177 0.04
169 191 0.05
170 784 0.19
171 2022 0.48
172 221 0.05
173 134 0.03
174 5 0.00
175 14 0.00
176 10 0.00
177 7 0.00
178 9 0.00
179 12 0.00
180 12 0.00
181 18 0.00
182 4 0.00
183 7 0.00
184 11 0.00
185 9 0.00
186 15 0.00
187 10 0.00
188 14 0.00
189 5 0.00
190 28 0.01
191 31 0.01
192 34 0.01
193 10 0.00
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.35
Consensus pattern (170 bp):
CTTGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTTTTGAGGCA
AACATTCAAATATAATCTATTTTAACTAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAG
ATTATAAAACCATTTAAAGCGAGTAATAAGCTTTTGAAGG
Found at i:563448 original size:212 final size:212
Alignment explanation
Indices: 563077--563488 Score: 522
Period size: 212 Copynumber: 1.9 Consensus size: 212
563067 AGTTTTCGAA
* * * * *
563077 GGCTTGAGTGATTATAAATAGTCTTTTCTTGCAAACGGATGACTTTTACTTCACGTTTCTCGAGG
1 GGCTTGAGTGACTATAAATAGACTTTTCTTACAAACGGATGACTTTTACTTCACATTCCTCGAGG
* * * * *
563142 TAAACAGTCAAATATAATCTATTTTAACTAAAACTATAAAAACATTCAGCTTCAAATCAATTATG
66 CAAACAGTCAAATATAATCTATTTTAACAAAAAATATAAAAAAATTCAGCTTAAAATCAATTATG
* * * ** * * * *
563207 CGATTATAAAACCATTTAAAGCTAGTAATAAGTTTTTTTAGGGCTTGAGTGACTATAAATTGACT
131 AGACTATAAAACCATTTAAAGCAAGTAATAAGGCTTTTGAAGGCTTGAGTGACCATAAATGGACT
563272 TTTCTAAGGCTTTCAAT
196 TTTCTAAGGCTTTCAAT
* * * * * *
563289 GGCTTGAGTGACTATAAATGGACTTTTCTTACCAATGGATGGCTTTTGCTTCACATTCCTTGAGG
1 GGCTTGAGTGACTATAAATAGACTTTTCTTACAAACGGATGACTTTTACTTCACATTCCTCGAGG
* * * * *
563354 CAAATATTCATATATAATCTATTTTAACAAAAAATGTAAAAAAATTCA-ATCTAAAATC-ATTAA
66 CAAACAGTCAAATATAATCTATTTTAACAAAAAATATAAAAAAATTCAGCT-TAAAATCAATT-A
563417 TGAGACTATAAAACCATTTAAAGCAAGTAATAAGGCTTTTGAAGGCTTGAGTGACCATAAATGGA
129 TGAGACTATAAAACCATTTAAAGCAAGTAATAAGGCTTTTGAAGGCTTGAGTGACCATAAATGGA
563482 CTTTTCT
194 CTTTTCT
563489 TGTGAATGGA
Statistics
Matches: 168, Mismatches: 30, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
211 4 0.02
212 164 0.98
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.35
Consensus pattern (212 bp):
GGCTTGAGTGACTATAAATAGACTTTTCTTACAAACGGATGACTTTTACTTCACATTCCTCGAGG
CAAACAGTCAAATATAATCTATTTTAACAAAAAATATAAAAAAATTCAGCTTAAAATCAATTATG
AGACTATAAAACCATTTAAAGCAAGTAATAAGGCTTTTGAAGGCTTGAGTGACCATAAATGGACT
TTTCTAAGGCTTTCAAT
Done.