Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399571.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2824.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2501
ACGTcount: A:0.28, C:0.10, G:0.09, T:0.29

Warning! 589 characters in sequence are not A, C, G, or T


Found at i:1206 original size:172 final size:170

Alignment explanation


    Indices: 901--1419  Score: 603
    Period size: 172  Copynumber: 3.0  Consensus size: 170

        891 NNNNNNNNNN

                                                                   *   *     
        901 ATTTACATTTGAATTCTTTGTATATTTTTAGTTAAAATAGACTAGAATTGAATGTCTACCATGAG
          1 ATTTACATTTGAATTCTTTGTATATTTTT-GTTAAAATAGACTAGAATTGAATGTATACTATGAG

            *                                                    *********   
        966 GAACATGAAGAAAAAGGCATTCATTGACAAGAAAAGTCCATTTATAGTCACCNNNNNNNNNNAAA
         65 AAACATGAAGAAAAAGGCATTCATTGACAAGAAAAGTCCATTTATAGTCACC-ATTCCTTCAAAA

                                  *                   
       1031 GCTTTATTACTCACTTTAAATGATTTTATAATCTCAAAATTG
        129 GCTTTATTACTCACTTTAAATGGTTTTATAATCTCAAAATTG

                              *                  *                 *         
       1073 ATTTACATTTGAATTCTTCGTATATTTTTGGTTAAAACAGACTAGAATTGAATGTTTACTATGAG
          1 ATTTACATTTGAATTCTTTGTATATTTTT-GTTAAAATAGACTAGAATTGAATGTATACTATGAG

                                 *                                      *    
       1138 AAACATGAAGAAAAAGGCATTTATTGACAAGAAAAGTCCATTTATAGTCATCCATTCCTTTAAAA
         65 AAACATGAAGAAAAAGGCATTCATTGACAAGAAAAGTCCATTTATAGTCA-CCATTCCTTCAAAA

                     *                         **     
       1203 GCTTTATTATTCACTTTAAATGGTTTTATAATCTCTTAATTG
        129 GCTTTATTACTCACTTTAAATGGTTTTATAATCTCAAAATTG

                *  *           *  *       *       *  *  *            *   *   
       1245 ATTTTCAGTTGAATT-TTTTTACATTTTCTATTAAAATGGATTATAATTGAATGTATGCATTTGA
          1 ATTTACATTTGAATTCTTTGTATATTTT-TGTTAAAATAGACTAGAATTGAATGTATAC-TATGA

                              *        *            *          *      *      
       1309 -AAACATGAAGAAAAAGGTATTCATTGGC-AGAAAAAGTCTATTTATAGTTAACCATTTCTTCAA
         64 GAAACATGAAGAAAAAGGCATTCATTGACAAG-AAAAGTCCATTTATAG-TCACCATTCCTTCAA

                *                                      *
       1372 AAGCATTATTACTCACTTTAAATGGTTTTATAATCTCAAAATTA
        127 AAGCTTTATTACTCACTTTAAATGGTTTTATAATCTCAAAATTG

                
       1416 ATTT
          1 ATTT

       1420 NNNNNNNNNN


Statistics
Matches: 297,  Mismatches: 45, Indels: 11
        0.84            0.13        0.03

Matches are distributed among these distances:
 170    2  0.01
 171  124  0.42
 172  169  0.57
 173    2  0.01

ACGTcount: A:0.36, C:0.12, G:0.12, T:0.38


Consensus pattern (170 bp):   
ATTTACATTTGAATTCTTTGTATATTTTTGTTAAAATAGACTAGAATTGAATGTATACTATGAGA
AACATGAAGAAAAAGGCATTCATTGACAAGAAAAGTCCATTTATAGTCACCATTCCTTCAAAAGC
TTTATTACTCACTTTAAATGGTTTTATAATCTCAAAATTG

Done.