Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399581.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2835.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2743
ACGTcount: A:0.19, C:0.06, G:0.07, T:0.20

Warning! 1291 characters in sequence are not A, C, G, or T


Found at i:325 original size:171 final size:170

Alignment explanation


    Indices: 1--465  Score: 459
    Period size: 171  Copynumber: 2.7  Consensus size: 170

                                                                             
          1 TAAAGCGAGTAATAAGGCTTTTGAAGGTATCGGTGTCTATAAATAGACTTTTTTACTAATAGATA
          1 TAAAGCGAGTAATAAGGCTTTTGAAGGTATCGGTGTCTATAAATAGACTTTTTTACTAATAGATA

                    *                   *                     *           ***
         66 TCTTTTTCTTCATGTTTCTCAAGGTAAATATACAATTATAATCTGTTTTAGTAAAAAAGATANNN
         66 TCTTTTTCCTCATGTTTCTCAAGGTAAACATACAATTATAATCTGTTTTAATAAAAAAGATAAAA

            *******    *              * * *          
        131 NNNNNNNAATTTAAACCAATTATGAGGTTATAAAG-TCATT
        131 GCGTTTAAATTAAAACCAATTATGAGATGAAAAAGCT-ATT

                                                        *   *      *     *   
        171 TAAAGCGAGTAATAAGGCTTTTGAAGGTATCGGTGTCTATAAATTGAATTTTTTTCCTAATGGAT
          1 TAAAGCGAGTAATAAGGCTTTTGAAGGTATCGGTGTCTATAAATAG-ACTTTTTTACTAATAGAT

                                 *      *                          *   *     
        236 ATCTTTTTCCTCATGTTTCTCGAGGTAACCATACAATTATAATCTGTTTTAATAATAAATATAAA
         65 ATCTTTTTCCTCATGTTTCTCAAGGTAAACATACAATTATAATCTGTTTTAATAAAAAAGATAAA

                            **                       
        301 AGCGTTTAAATTAAAATTAATTATGAGATGAAAAAGCTATT
        130 AGCGTTTAAATTAAAACCAATTATGAGATGAAAAAGCTATT

                            *    *     *  *             * *         * *   *  
        342 TAAAGCGAGTAATAAGCCTTTCGAAGGCATTGGT-TACTATAAAAAAACTTTTCTTGCCAATGGA
          1 TAAAGCGAGTAATAAGGCTTTTGAAGGTATCGGTGT-CTATAAATAGACTTTT-TTACTAATAGA

             *        ** * *      *    * *    *                          
        406 TGT-TTGTTTTTTTACGTTTCTTAAGGCAGACATTCAATTATAATCTGTTTTAATAAAAAA
         64 TATCTT-TTTCCTCATGTTTCTCAAGGTAAACATACAATTATAATCTGTTTTAATAAAAAA

        466 TATANNNNNN


Statistics
Matches: 241,  Mismatches: 49, Indels: 9
        0.81            0.16        0.03

Matches are distributed among these distances:
 170   53  0.22
 171  187  0.78
 172    1  0.00

ACGTcount: A:0.35, C:0.11, G:0.14, T:0.38


Consensus pattern (170 bp):   
TAAAGCGAGTAATAAGGCTTTTGAAGGTATCGGTGTCTATAAATAGACTTTTTTACTAATAGATA
TCTTTTTCCTCATGTTTCTCAAGGTAAACATACAATTATAATCTGTTTTAATAAAAAAGATAAAA
GCGTTTAAATTAAAACCAATTATGAGATGAAAAAGCTATT
Done.