Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018397486.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_638.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 13174
ACGTcount: A:0.34, C:0.11, G:0.12, T:0.32
Warning! 1517 characters in sequence are not A, C, G, or T
Found at i:948 original size:170 final size:161
Alignment explanation
Indices: 746--1070 Score: 300
Period size: 171 Copynumber: 2.0 Consensus size: 161
736 TAATAAGTCT
* * * *
746 TTTGAAGAAATAGGTGATTATAAATGGACTTTTCTT-CAAAATGGATAGCTTTTTC-T-ACATGT
1 TTTGAAGAAATAGGTGACTATAAATAGACTTTTCTTGCAAAA-GAATACCTTTTTCTTCACAT-T
* * * * * *
808 TTCAAAGGCAAGCATTTAATTATAGTCTGTTTCAA-TGAAAAATGCAAAGA-AATTCAACTTCAA
64 TCCAAAGGCAAGCATTCAATTATAGTCTATTTCAACT-AAAAATACAAA-ACAAGTCAACTTAAA
*
871 ATCAATTATGAGATTATTAAACCATTTAAAGTGAG
127 ATCAATTATGAGATTATAAAACCATTTAAAGTGAG
* * *
906 TNNNNNNNNNNTTGAAGAAATGGGTGACTATAAATAGACTTTTTTTGCCAAAGAATACCTTTTTC
1 T----------TTGAAGAAATAGGTGACTATAAATAGACTTTTCTTGCAAAAGAATACCTTTTTC
* * * * * *
971 TTCACATTTCCTAGGGTAGGCATTCAATTATAGTCTATTTTAACTAAAAATATAAAACAAGTCAA
56 TTCACATTTCCAAAGGCAAGCATTCAATTATAGTCTATTTCAACTAAAAATACAAAACAAGTCAA
*
1036 CTTAAAATTAATTATGAGATTATAAAACCATTTAA
121 CTTAAAATCAATTATGAGATTATAAAACCATTTAA
1071 NNNNNNNNNN
Statistics
Matches: 129, Mismatches: 21, Indels: 19
0.76 0.12 0.11
Matches are distributed among these distances:
160 1 0.01
170 43 0.33
171 80 0.62
172 5 0.04
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.34
Consensus pattern (161 bp):
TTTGAAGAAATAGGTGACTATAAATAGACTTTTCTTGCAAAAGAATACCTTTTTCTTCACATTTC
CAAAGGCAAGCATTCAATTATAGTCTATTTCAACTAAAAATACAAAACAAGTCAACTTAAAATCA
ATTATGAGATTATAAAACCATTTAAAGTGAG
Found at i:1107 original size:171 final size:160
Alignment explanation
Indices: 917--1352 Score: 322
Period size: 170 Copynumber: 2.6 Consensus size: 160
907 NNNNNNNNNN
* * *
917 TTGAAGAAATGGGTGACTATAAATAGACTTTTTTTGCCAAAGAATACCTTT-TTCTTCACATTTC
1 TTGAAGAAATGGCTGACTATAAATAGACTTTTCTTCCCAAAGAAT-CCTTTCTTCTTCACATTTC
* **
981 -CTAGGGTAGGCATTCAATTATAGTCTATTTTAACTAAAAATATAAA-ACAAGTCAACTTAAAAT
65 TC-AAGGTAAACATTCAATTATAGTCTATTTTAACT-AAAATATAAATA-AAGTCAACTTAAAAT
* *
1044 TAATTATGAGATTATAAAACCATTTAANNNNNNNNNNAAGGCTT
127 CAACTATGAGATTATAAAACCATTTAA----------AAGGCTT
* * * * * ** *
1088 TTGAAGGAATGGCTGACTATAAATGGACTTTTCTTCCCAATGAATGCTTTCTTCTTTAGGTTTTT
1 TTGAAGAAATGGCTGACTATAAATAGACTTTTCTTCCCAAAGAATCCTTTCTTCTTCACATTTCT
* * * *
1153 CAAGTTAAACATTCAATTATAGTCTGTTTTAACTAAAATGTAAATAAATTCAACTTAAAATCAAC
66 CAAGGTAAACATTCAATTATAGTCTATTTTAACTAAAATATAAATAAAGTCAACTTAAAATCAAC
* *
1218 TATTAGATTATAAAACCATNNNNNNNNNNTAATAAGGCTT
131 TATGAGATTATAAAACCAT---------TTAA-AAGGCTT
* * * * * * *
1258 TTGAAGGAATGGATGACAATAAATAGATTTTTCTTGCCAATGAATGCCTTT-TTCTTCACGTTTC
1 TTGAAGAAATGGCTGACTATAAATAGACTTTTCTTCCCAAAGAAT-CCTTTCTTCTTCACATTTC
* * *
1322 TCAATGTAAACAGTCAATTATAATCTGATTT
65 TCAAGGTAAACATTCAATTATAGTCT-ATTT
1353 AATCAAAAAA
Statistics
Matches: 214, Mismatches: 37, Indels: 28
0.77 0.13 0.10
Matches are distributed among these distances:
170 126 0.59
171 84 0.39
172 1 0.00
179 3 0.01
ACGTcount: A:0.35, C:0.13, G:0.12, T:0.36
Consensus pattern (160 bp):
TTGAAGAAATGGCTGACTATAAATAGACTTTTCTTCCCAAAGAATCCTTTCTTCTTCACATTTCT
CAAGGTAAACATTCAATTATAGTCTATTTTAACTAAAATATAAATAAAGTCAACTTAAAATCAAC
TATGAGATTATAAAACCATTTAAAAGGCTT
Found at i:3057 original size:21 final size:21
Alignment explanation
Indices: 3032--3083 Score: 95
Period size: 21 Copynumber: 2.5 Consensus size: 21
3022 GATTATAAAA
3032 CCTTTTAAAGCGAGTAATAAG
1 CCTTTTAAAGCGAGTAATAAG
*
3053 TCTTTTAAAGCGAGTAATAAG
1 CCTTTTAAAGCGAGTAATAAG
3074 CCTTTTAAAG
1 CCTTTTAAAG
3084 GANNNNNNNN
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.37, C:0.13, G:0.17, T:0.33
Consensus pattern (21 bp):
CCTTTTAAAGCGAGTAATAAG
Found at i:3816 original size:171 final size:166
Alignment explanation
Indices: 3096--3804 Score: 449
Period size: 171 Copynumber: 4.1 Consensus size: 166
3086 NNNNNNNNNN
* * * * * *
3096 ATAAATGAACTTTTCTTACTAATGAATGCC-TTTTTCTTCATGTTTCTCATGGTAGACATTCAAC
1 ATAAATG-ACTTTTCTTACCAA-GAAT-CCTTTTTTCTTCACGTTTCTCAAGATAGACAGTCAAT
* * * * * * *
3160 TATAGTTTATTTTAA-CAAAAAA-TATGAAAGCATTTAACTGAAAATCAATTACGAAATTATAAA
63 TAT-GTCTGTTTTAACCAAAAAAGTA--AAA-AAATTAACTTAAAATCAATTATGAGA-TATAAA
* * * * * *
3223 ACCATTTAGAGGGAGTAATAAGGCTTTTGAAAGATTGGGTGACT
123 ACTATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGTGACT
* * * * ** * *********
3267 ATAAATGGATTTTTCTTATCAATGAATGCC-TTTTTCTTTAAGTTTCTTGAGGTAGNNNNNNNNN
1 ATAAAT-GACTTTTCTTACCAA-GAAT-CCTTTTTTCTTCACGTTTCTCAAGATAGACAGTCAAT
* * * *
3331 NATAGTCTGTTTTAA-CAAAAAATGTAAAACAATTCACTTAAAATTAATTATGAGATTATAAAAC
63 TAT-GTCTGTTTTAACCAAAAAA-GTAAAAAAATTAACTTAAAATCAATTATGAGA-TATAAAAC
* *
3395 TATTTAAAGCAAGTAATAAGGCCTTTGAAGGAATGAGTGACT
125 TATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGTGACT
* * * * * * *
3437 GTAAATGGACTTTTGTTACCAGTGAATCCCTTTTTTCTTCACGTTTCTCAAGGTAGGCATTTAAT
1 ATAAAT-GACTTTTCTTACCA-AGAAT-CCTTTTTTCTTCACGTTTCTCAAGATAGACAGTCAAT
* * * * * ***
3502 TATGTTCTGTTTTGACCATAAATGTAAAAAAAATAAACTTAAAATCAATTTTGAGAT-TANNNNN
63 TATG-TCTGTTTTAACCAAAAAAGT-AAAAAAATTAACTTAAAATCAATTATGAGATATA--AAA
***** * * *
3566 NNNNNTAAAGTGAGTAATAAGGCTTTTGAAAGAATGAGTGGCT
124 CTATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGTGACT
* * * * * *
3609 ACAAATAGACTTTTCTTGCCAACGAATCCTTTTTTCTTCACATTTCTCTAGATAGATAGTCATTT
1 ATAAAT-GACTTTTCTTACCAA-GAATCCTTTTTTCTTCACGTTTCTCAAGATAGACAGTCAATT
* *
3674 ATTGTCTGTTTTAACCAAAAAAGTAAAAAAATTTAACTTAAAATCAATTATGGGCATATAAAATT
64 A-TGTCTGTTTTAACCAAAAAAGTAAAAAAA-TTAACTTAAAATCAATTATGAG-ATATAAAACT
** *
3739 ATTTAAAGCGAGTAATAAGAATTTTGAAGGAATGAGTAACT
126 ATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGTGACT
*
3780 ATAAATGCACTTTTCTTCCCAAGAA
1 ATAAATG-ACTTTTCTTACCAAGAA
3805 ATGACTTTTT
Statistics
Matches: 411, Mismatches: 111, Indels: 33
0.74 0.20 0.06
Matches are distributed among these distances:
170 100 0.24
171 219 0.53
172 88 0.21
173 4 0.01
ACGTcount: A:0.36, C:0.12, G:0.14, T:0.35
Consensus pattern (166 bp):
ATAAATGACTTTTCTTACCAAGAATCCTTTTTTCTTCACGTTTCTCAAGATAGACAGTCAATTAT
GTCTGTTTTAACCAAAAAAGTAAAAAAATTAACTTAAAATCAATTATGAGATATAAAACTATTTA
AAGCGAGTAATAAGGCTTTTGAAGGAATGAGTGACT
Found at i:4721 original size:171 final size:163
Alignment explanation
Indices: 4544--4869 Score: 322
Period size: 171 Copynumber: 2.0 Consensus size: 163
4534 NNNNNNNNNN
* *
4544 GCTTTTGAAGGAATGGGTGACTATAAATGA-ACTTTTCTTGCCAATGAAT-ACTTTCTTCTTCAG
1 GCTTTTGAAGGAATGGGTGACAATAAAT-ATACTTTTCTTGCCAATGAATGACTTT-ATCTTCAG
** * * * **
4607 GTTTC-TCAAGTTAGTCATTCAATAATAGTCTTTTTTAACCAAAAATGT-AAA-GTAATTCAACT
64 GTTTCTTCAAG-TAAACATTCAATAATAATCTGTTTTAACCAAAAAAGTGAAACAAAATTCAACT
4669 TAAAATCAATTATT-AGATTATAAAACCANNNNNNNNNNGTAATAAG
128 TAAAATCAATT-TTGAGATTATAAAACCA----------GTAATAAG
* * * *
4715 GCTTTTGAAGGAATGGGTGACAATAAATATATTTTTCTTGCTAATGAATGCCTTTATCTTCATGT
1 GCTTTTGAAGGAATGGGTGACAATAAATATACTTTTCTTGCCAATGAATGACTTTATCTTCAGGT
* * * * *
4780 TTCTTGACGTAAACATTCAATTATAATCTGTTTTAACCAAAAAAGTGAAACAAAATTGAGCTTAA
66 TTCTTCAAGTAAACATTCAATAATAATCTGTTTTAACCAAAAAAGTGAAACAAAATTCAACTTAA
4845 AATCAATTTTGAGATTATAAAACCA
131 AATCAATTTTGAGATTATAAAACCA
4870 TTTAAAGTGA
Statistics
Matches: 131, Mismatches: 18, Indels: 10
0.82 0.11 0.06
Matches are distributed among these distances:
170 1 0.01
171 86 0.66
172 12 0.09
173 32 0.24
ACGTcount: A:0.36, C:0.13, G:0.13, T:0.35
Consensus pattern (163 bp):
GCTTTTGAAGGAATGGGTGACAATAAATATACTTTTCTTGCCAATGAATGACTTTATCTTCAGGT
TTCTTCAAGTAAACATTCAATAATAATCTGTTTTAACCAAAAAAGTGAAACAAAATTCAACTTAA
AATCAATTTTGAGATTATAAAACCAGTAATAAG
Found at i:5539 original size:170 final size:170
Alignment explanation
Indices: 4544--6583 Score: 853
Period size: 170 Copynumber: 12.0 Consensus size: 170
4534 NNNNNNNNNN
* * * * * *
4544 GCTTTTGAAGGAATGGGTGACTATAAATGAACTTTTCTTGC-CAATGAATACTTTCTTCTTCAGG
1 GCTTTTAAAGGAATAGGTGACTATAAATGGACTTTTCTT-CTCAATGAAAACTTTTTTCTTCATG
* * * * * * *
4608 TTTCTCAAGTTAGTCATTCAATAATAGTCTTTTTTAACCAAAAATGTAAAGTAATTCAACTTAAA
65 TTTCTCAAGGTAGACATTCAATTATAATCTGTTTTAACCAAAAATGTAAA-AAAGTCAACTTAAA
* **********
4673 ATCAATTATTAGATTATAAAACCANNNNNNNNNNGTAATAAG
129 ATCAATTATGAGATTATAAAACCATTTAAAGAGAGTAATAAG
* * * ** * ** * *
4715 GCTTTTGAAGGAATGGGTGACAATAAATATATTTTTCTTGCT-AATGAATGCCTTTATCTTCATG
1 GCTTTTAAAGGAATAGGTGACTATAAATGGACTTTTCTT-CTCAATGAAAACTTTTTTCTTCATG
** * * * * * *
4779 TTTCTTGACGTAAACATTCAATTATAATCTGTTTTAACCAAAAAAGTGAAACAAAATTGAGCTTA
65 TTTCTCAAGGTAGACATTCAATTATAATCTGTTTTAACC-AAAAA-TGTAA-AAAAGTCAACTTA
* * ***
4844 AAATCAATTTTGAGATTATAAAACCATTTAAAGTGAGTAATNNN
127 AAATCAATTATGAGATTATAAAACCATTTAAAGAGAGTAATAAG
****************** * **
4888 NNNNNNNNNNNNNNNNNNGACTATAAATGGACTTTTTTTGC-CAATG-AATGTCTTTTTCTTCAT
1 GCTTTTAAAGGAATAGGTGACTATAAATGGACTTTTCTT-CTCAATGAAAACT-TTTTTCTTCAT
* * * * * *
4951 GTTTCTCAATGTAGGCATTCAATTATAGTCTATTTTAACCAAAAATATAAAAAAGTCTACTTAAA
64 GTTTCTCAAGGTAGACATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAAAGTCAACTTAAA
* * * * *
5016 ATTAATTGTTAGATTATAAAACTC-TTAAAAGCA-AGTGATAAG
129 ATCAATTATGAGATTATAAAAC-CATTTAAAG-AGAGTAATAAG
** * * * * * ** *
5058 GCTTTCGAAGGAATGGGTGATTATAAATGGACTTTTCCTATCGATGAATCCATTTTTCTTCACT-
1 GCTTTTAAAGGAATAGGTGACTATAAATGGACTTTTCTTCTCAATGAAAACTTTTTTCTTCA-TG
* * * * * *
5122 TTTCTCAAGCTAGACATTC-TTTATAGTCTGTTTTAACCGAAAATGTAAAAAAATTCAAGTTAAA
65 TTTCTCAAGGTAGACATTCAATTATAATCTGTTTTAACCAAAAATGT-AAAAAAGTCAACTTAAA
* * * *
5186 ATCAATTATTAGATGATAAAACCATTTCAAGCGAGTAATAAG
129 ATCAATTATGAGATTATAAAACCATTTAAAGAGAGTAATAAG
* * * * ** * *
5228 GCTTTTAAAAGAAGAGGTGACAATAAATAGG-CTTTTCTTATCAATG-AATGTCATTTTCCTCAT
1 GCTTTTAAAGGAATAGGTGACTATAAAT-GGACTTTTCTTCTCAATGAAAACT-TTTTTCTTCAT
* * * **
5291 GTTTCTTGAA-GTAGACATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAAAATTAACTTNN
64 GTTTC-TCAAGGTAGACATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAAAGTCAACTTAA
******** * *
5355 NNNNNNNNATGAGATTATAAAACTATTTAAAAAGAGTAATAAG
128 AATCAATTATGAGATTATAAAACCATTTAAAGAGAGTAATAAG
** * * * *
5398 GCTTTTGGAGGAATAGGAGACTATAAATGGACTTTTTTTGCTC-ATGAAAACTTTTTTCTTTACG
1 GCTTTTAAAGGAATAGGTGACTATAAATGGACTTTTCTT-CTCAATGAAAACTTTTTTCTTCATG
* ** *
5462 TTTCTCAAGGTAGACTTTCAATTATAATCTGTTTTAAGTAAAAATGTAAAAAAGTCAACTTAAAC
65 TTTCTCAAGGTAGACATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAAAGTCAACTTAAAA
********** *
5527 TCAATTATGAGATTATAAANNNNNNNNNNGCGAGTAATAAG
130 TCAATTATGAGATTATAAAACCATTTAAAGAGAGTAATAAG
* * * **
5568 GCTTTTAAAGGAAT-GAGTAACTATAAATGGAGTTTTCTTCCCAAT-AAATAGC-TTTTTCGACA
1 GCTTTTAAAGGAATAG-GTGACTATAAATGGACTTTTCTTCTCAATGAAA-A-CTTTTTTCTTCA
* * * * * ** *
5630 AGTTTCTCGAGGTAGGCATTCAATTATAGTCTGTTTCAA-TGAAAATATAAAACAA-TCAACTTA
63 TGTTTCTCAAGGTAGACATTCAATTATAATCTGTTTTAACCAAAAATGTAAAA-AAGTCAACTTA
* **********
5693 AAATCAATTATAAGATTATAAAACCATTTAAAGNNNNNNNNNNG
127 AAATCAATTATGAGATTATAAAACCATTTAAAGAGAGTAATAAG
* * * * * * *
5737 GCTTTTAAAAGAATGGGTGACTATAAATGAACTTTTCTTGC-AAATGAATACCTTTTTCTTTATG
1 GCTTTTAAAGGAATAGGTGACTATAAATGGACTTTTCTT-CTCAATGAAAACTTTTTTCTTCATG
* * * * * *
5801 TTTCTCAAGGTAAACATTTAATTATAATCTCTTTTAACTAAAAATGTTAAAACAATTGAACTTAA
65 TTTCTCAAGGTAGACATTCAATTATAATCTGTTTTAACCAAAAATG-TAAAA-AAGTCAACTTAA
* ********** *
5866 AATCAATTATGAGATTACANNNNNNNNNNAAGCGAGTAATAAG
128 AATCAATTATGAGATTATAAAACCATTTAAAGAGAGTAATAAG
* * * * *
5909 GCTTTTGAAGGAAT-GGTGGATTGTAAATGGACTTTTCTTC-CGAAT--AAA-TTTTTTTTTAAT
1 GCTTTTAAAGGAATAGGT-GACTATAAATGGACTTTTCTTCTC-AATGAAAACTTTTTTCTTCAT
* * * * * ** * * * *
5969 ACGTTTCTTAAGATAGGCATTTAATTATAGTCTGTTTTAATAAAAAATATAAAAAATTTAACATA
64 --GTTTCTCAAGGTAGACATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAAAGTCAACTTA
* * * *
6034 AAATCTATTATTAGATTATAAAATCATTTAAAGCGAGTAATAA-
127 AAATCAATTATGAGATTATAAAACCATTTAAAGAGAGTAATAAG
* ********* * **
6077 GCTTTTTGAAGGAAT-GGATGACTATAAATNNNNNNNNNNTGC-CAATG-AATGTCTTTTTCTTC
1 GC-TTTTAAAGGAATAGG-TGACTATAAAT-GGACTTTTCTTCTCAATGAAAACT-TTTTTCTTC
* * * * * * * *
6139 ATGTTTATCAAGGTAGACATTCAACTATAGTTTATTTTAACTAAAAAT-AAAAAAATTCAACTTA
62 ATGTTTCTCAAGGTAGACATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAAAGTCAACTTA
********** *
6203 AAATCANNNNNNNNNNTATAAAACCATTTAAAGCGAGTAAT-AG
127 AAATCAATTATGAGATTATAAAACCATTTAAAGAGAGTAATAAG
* *
6246 GACTTTTGAAA-GAAT-GGTTGACTATCAATGGACTTTTCTTGC-CAATGAATA-TCTTTTTCTT
1 G-CTTTT-AAAGGAATAGG-TGACTATAAATGGACTTTTCTT-CTCAATGAAAACT-TTTTTCTT
* * * * * * * ** * * * * *
6307 TAAGTTTGTCGATGG-AAACAATCAACTATGGTTTGTTTTAGCCAAAAATATAAAAAAATTTAAC
61 CATGTTTCTC-AAGGTAGACATTCAATTATAATCTGTTTTAACCAAAAATGT-AAAAAAGTCAAC
* * * *
6371 TT-AAATCAATTATTAGATTATAAAACTATTTAAAGCGAGCAATAAG
124 TTAAAATCAATTATGAGATTATAAAACCATTTAAAGAGAGTAATAAG
********** * ** *
6417 GC-TTNNNNNNNNNNGAGTGACTATAAATAGACTTTTCTTACT-AATG-AATGTCTTTTTCTTTA
1 GCTTTTAAAGGAATAG-GTGACTATAAATGGACTTTTCTT-CTCAATGAAAACT-TTTTTCTTCA
* * * * * *
6479 GGTTTCTCCAGGTAGACATTCAATTATAGTCTGTTTAAACCAAAAATGTAAAAAAATTCGACTTA
63 TGTTTCTCAAGGTAGACATTCAATTATAATCTGTTTTAACCAAAAATGT-AAAAAAGTCAACTTA
* * *
6544 AAATCAATTATGGGATTATAAAATCATTTAAAGCGAGTAA
127 AAATCAATTATGAGATTATAAAACCATTTAAAGAGAGTAA
6584 NNNNNNNNNN
Statistics
Matches: 1369, Mismatches: 439, Indels: 122
0.71 0.23 0.06
Matches are distributed among these distances:
168 5 0.00
169 345 0.25
170 601 0.44
171 228 0.17
172 82 0.06
173 107 0.08
174 1 0.00
ACGTcount: A:0.36, C:0.11, G:0.13, T:0.34
Consensus pattern (170 bp):
GCTTTTAAAGGAATAGGTGACTATAAATGGACTTTTCTTCTCAATGAAAACTTTTTTCTTCATGT
TTCTCAAGGTAGACATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAAAGTCAACTTAAAAT
CAATTATGAGATTATAAAACCATTTAAAGAGAGTAATAAG
Found at i:5762 original size:169 final size:162
Alignment explanation
Indices: 5567--5882 Score: 305
Period size: 169 Copynumber: 1.9 Consensus size: 162
5557 CGAGTAATAA
* * * * *
5567 GGCTTTTAAAGGAATGAGTAACTATAAATGGAGTTTTCTTCCCAATAAATAGCTTTTTCGACAAG
1 GGCTTTTAAAAGAATGAGTAACTATAAATGAACTTTTCTTCCAAATAAATACCTTTTTCGACAAG
* ** * * *
5632 TTTCTCGAGGTAGGCATTCAATTATAGTCTGTTTCAA-TGAAAAT-ATAAAACAA-TCAACTTAA
66 TTTCTCAAGGTAAACATTCAATTATAATCTCTTTCAACTAAAAATGATAAAACAATTCAACTTAA
5694 AATCAATTATAAGATTATAAAACCATTTAAAG
131 AATCAATTATAAGATTATAAAACCATTTAAAG
* * * *
5726 NNNNNNNNNNGGCTTTTAAAAGAATGGGTGACTATAAATGAACTTTTCTTGCAAATGAATACCTT
1 ----------GGCTTTTAAAAGAATGAGTAACTATAAATGAACTTTTCTTCCAAATAAATACCTT
*** * * * *
5791 TTTCTTTATGTTTCTCAAGGTAAACATTTAATTATAATCTCTTTTAACTAAAAATGTTAAAACAA
56 TTTCGACAAGTTTCTCAAGGTAAACATTCAATTATAATCTCTTTCAACTAAAAATGATAAAACAA
* *
5856 TTGAACTTAAAATCAATTATGAGATTA
121 TTCAACTTAAAATCAATTATAAGATTA
5883 CANNNNNNNN
Statistics
Matches: 120, Mismatches: 24, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
169 82 0.68
170 6 0.05
171 8 0.07
172 24 0.20
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.35
Consensus pattern (162 bp):
GGCTTTTAAAAGAATGAGTAACTATAAATGAACTTTTCTTCCAAATAAATACCTTTTTCGACAAG
TTTCTCAAGGTAAACATTCAATTATAATCTCTTTCAACTAAAAATGATAAAACAATTCAACTTAA
AATCAATTATAAGATTATAAAACCATTTAAAG
Found at i:6018 original size:341 final size:321
Alignment explanation
Indices: 5416--6066 Score: 617
Period size: 341 Copynumber: 1.9 Consensus size: 321
5406 AGGAATAGGA
* * ** * *
5416 GACTATAAATGGACTTTTTTTGCTCATGAAAACTTTTTTCTTTACGTTTCTCAAGGTAGACTTTC
1 GACTATAAATGAACTTTTCTTGCAAATGAAAACCTTTTTCTTTACGTTTCTCAAGGTAAACTTTC
* * * *
5481 AATTATAATCTGTTTTAAGTAAAAATGTAAAAAAGTCAACTTAAACTCAATTATGAGATTATAAA
66 AATTATAATCTCTTTTAACTAAAAATGTAAAAAAGTCAACTTAAAATCAATTATGAGATTACAAA
** *
5546 NNNNNNNNNNGCGAGTAATAAGGCTTTTAAAGGAATGAGTAACTATAAATGGAGTTTTCTTCCCA
131 --------AAGCGAGTAATAAGGCTTTTAAAGGAATGAGTAACTATAAATGGACTTTTCTTCCCA
* * * *
5611 ATAAATAGCTTTTTCGACAAGTTTCTCGAGGTAGGCATTCAATTATAGTCTGTTTCAATGAAAAT
188 ATAAATAGCTTTTTCAACAAGTTTCTCAAGATAGGCATTCAATTATAGTCTGTTTCAATAAAAAT
*
5676 ATAAAACAA-TCAACTTAAAATCAATTATAAGATTATAAAACCATTTAAAGNNNNNNNNNNGGCT
253 ATAAAA-AATTCAACATAAAATCAATTATAAGATTATAAAACCATTTAAAG----------GGCT
5740 TTTAAAAGAATGGGT
307 TTTAAAAGAATGGGT
* *
5755 GACTATAAATGAACTTTTCTTGCAAATGAATACCTTTTTCTTTATGTTTCTCAAGGTAAACATTT
1 GACTATAAATGAACTTTTCTTGCAAATGAAAACCTTTTTCTTTACGTTTCTCAAGGTAAAC-TTT
* *
5820 -AATTATAATCTCTTTTAACTAAAAATGTTAAAACAATTGAACTTAAAATCAATTATGAGATTAC
65 CAATTATAATCTCTTTTAACTAAAAATG-TAAAA-AAGTCAACTTAAAATCAATTATGAGATTAC
** * * * *
5884 ANNNNNNNNNNAAGCGAGTAATAAGGCTTTTGAAGGAATG-GTGGATTGTAAATGGACTTTTCTT
128 A--------AAAAGCGAGTAATAAGGCTTTTAAAGGAATGAGT-AACTATAAATGGACTTTTCTT
* ** * * * * * *
5948 CCGAATAAAT-TTTTTTTTAATACGTTTCTTAAGATAGGCATTTAATTATAGTCTGTTTTAATAA
184 CCCAATAAATAGCTTTTTCAACAAGTTTCTCAAGATAGGCATTCAATTATAGTCTGTTTCAAT-A
* * * *
6012 AAAATATAAAAAATTTAACATAAAATCTATTATTAGATTATAAAATCATTTAAAG
248 AAAATATAAAAAATTCAACATAAAATCAATTATAAGATTATAAAACCATTTAAAG
6067 CGAGTAATAA
Statistics
Matches: 257, Mismatches: 41, Indels: 26
0.79 0.13 0.08
Matches are distributed among these distances:
339 78 0.30
340 53 0.21
341 126 0.49
ACGTcount: A:0.37, C:0.11, G:0.12, T:0.35
Consensus pattern (321 bp):
GACTATAAATGAACTTTTCTTGCAAATGAAAACCTTTTTCTTTACGTTTCTCAAGGTAAACTTTC
AATTATAATCTCTTTTAACTAAAAATGTAAAAAAGTCAACTTAAAATCAATTATGAGATTACAAA
AAGCGAGTAATAAGGCTTTTAAAGGAATGAGTAACTATAAATGGACTTTTCTTCCCAATAAATAG
CTTTTTCAACAAGTTTCTCAAGATAGGCATTCAATTATAGTCTGTTTCAATAAAAATATAAAAAA
TTCAACATAAAATCAATTATAAGATTATAAAACCATTTAAAGGGCTTTTAAAAGAATGGGT
Found at i:7566 original size:171 final size:171
Alignment explanation
Indices: 6688--13174 Score: 3563
Period size: 171 Copynumber: 37.9 Consensus size: 171
6678 NNNNNNNNNN
* * ** * * **
6688 TTATGAGATCATAAAACTATTTAAAATGAGTAATAAAGCTTTTGAAGGAATGAATGACTATAAAT
1 TTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAAGAATGGGTGACTATAAAT
* * * * * * *
6753 GGACTTTT-TT-CTCAATAAATGGC-TTTTTGTACACGTTTCTCAAAGCA-AGCATTAAATTATA
66 GGACTTTTCTTGC-CAATGAAT-GCTTTTTTCTTCACGTTTCTTAAGGTAGA-CATTCAATTATA
* * * * *
6814 GTCTATTTCAA-TGAAAAATATAAACACATTCAACTTAAAATCAA
128 GTCTGTTTTAACT-AAAAATGTAAAAAAATTCAACTTAAAATCAA
* * * *
6858 TTATGAAATTATAAAACTATTTAAAGTGAGTAATAAGCCTTTTGAAAGAATGGGTGACTATAAAT
1 TTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAAGAATGGGTGACTATAAAT
** * * *
6923 GGACTTTTCTTATCAATGAATCCTTTTTTCTTCATGTTTCTTAAGGTAGACATTCAATTATTGTC
66 GGACTTTTCTTGCCAATGAATGCTTTTTTCTTCACGTTTCTTAAGGTAGACATTCAATTATAGTC
* * * **
6988 TGTTTCAACAAAAAATG-AAAAAATATTTAACTTAAGTTCAA
131 TGTTTTAACTAAAAATGTAAAAAA-ATTCAACTTAAAATCAA
* ********** *
7029 TTATGAGATTACAAAACCATTTAAAGCGAGTANNNNNNNNNNTGAAGGAATGGGTGACTATAAAT
1 TTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAAGAATGGGTGACTATAAAT
* * ** * **
7094 GAACTTTTCTT-CTTAATGAATGACTTTTTT-TAT-ACGTTT-TCCGAGATAGGTATTCAATTAT
66 GGACTTTTCTTGC-CAATGAATG-CTTTTTTCT-TCACGTTTCT-TAAGGTAGACATTCAATTAT
* * ********** *
7155 AGTC-GATTTT-AGTGAAAAATATAAAAAAANNNNNNNNNNAATTAA
127 AGTCTG-TTTTAACT-AAAAATGTAAAAAAATTCAACTTAAAATCAA
* * * * *
7200 TTATGAGATTATAAAACGATTTTAAGCGAGTAGTAAGACTTTTGAAGGAATGGGTGACTATAAAT
1 TTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAAGAATGGGTGACTATAAAT
* ** * * ** * * * *
7265 AGACTTTTCTTATCAATGAATG-TCTTTTTCTTTATGTTTCTCGAGGTA-AAAGTTTAAATATAA
66 GGACTTTTCTTGCCAATGAATGCT-TTTTTCTTCACGTTTCTTAAGGTAGACA-TTCAATTATAG
* * *
7328 TCTATTTTAAGC-AAAAAAGTAAAAAAATTAAACTTAAAATCAA
129 TCTGTTTTAA-CTAAAAATGTAAAAAAATTCAACTTAAAATCAA
********** * ** * * * *
7371 TNNNNNNNNNNTAAAACCATTTAAAGTGAGTAATAAGGCTTTCCAAGGCATGTGAGACTATAAAT
1 TTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAAGAATGGGTGACTATAAAT
* * *
7436 GGACTTTTCTTGCCAATTAATACTTTTTTCTTCACGTTTCTTAAGGTAGACATTTAATTATAGT-
66 GGACTTTTCTTGCCAATGAATGCTTTTTTCTTCACGTTTCTTAAGGTAGACATTCAATTATAGTC
* *
7500 TTTTTGTAACTAAAAATATAAAAAAATTCAACTTAAAATCAA
131 TGTTT-TAACTAAAAATGTAAAAAAATTCAACTTAAAATCAA
* * ** ***********
7542 TTATGATATTACAAAATAATTTAAAGCGAGTAATAAGGCNNNNNNNNNNTTGGGTGACTATAAAT
1 TTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAAGAATGGGTGACTATAAAT
* * * *** * * *
7607 GGACTTTTCTTCCCAATGTATAACTTTTTT-GAGATGTTTCCTAAGGTA-AGCACTCAATTATAG
66 GGACTTTTCTTGCCAATGAAT-GCTTTTTTCTTCACGTTTCTTAAGGTAGA-CATTCAATTATAG
* * * *
7670 TATGTTTTAA-TGAAAATGTAAAAAAAAAAATCAACATAAAATCAA
129 TCTGTTTTAACTAAAAATGT---AAAAAAATTCAACTTAAAATCAA
* * * * *
7715 TTATGAGATTATAGAACCATTTAAAAGTGAGTAATAAGGCTTTTAAAAAAATAGGTGACTATAAA
1 TTATGAGATTATAAAACCATTT-AAAGCGAGTAATAAGGCTTTTGAAAGAATGGGTGACTATAAA
* * * * * * * *
7780 TAGAATTTTCTTACCAATGAATG-TCTTTTTCTTCATGTTTCTTAAGGTAAATATTTAATTATAA
65 TGGACTTTTCTTGCCAATGAATGCT-TTTTTCTTCACGTTTCTTAAGGTAGACATTCAATTATAG
* *
7844 TCTGTTTTAACCAAAAATGTAAAAACAATTGAACTTAAAATCAA
129 TCTGTTTTAACTAAAAATGTAAAAA-AATTCAACTTAAAATCAA
*********** ** * * *
7888 TNNNNNNNNNNCAAAACCATTTAAAATGAGTAATAAAGCTTTTGAAAGAATAGGAGACTATAAAT
1 TTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAAGAATGGGTGACTATAAAT
* * ** ** ** * *
7953 GGACTTTTCAT-CCAAATAAATATTTTTTTCAACACGTTTCCCAA-GTCA-AGTATTTAATTATA
66 GGACTTTTCTTGCC-AATGAATGCTTTTTTCTTCACGTTTCTTAAGGT-AGA-CATTCAATTATA
* * *
8015 ATCTGTTTTAA-TGAAAAATGT-AAAAAATTCAACATAAAATCTA
128 GTCTGTTTTAACT-AAAAATGTAAAAAAATTCAACTTAAAATCAA
* * * * * * * *
8058 TTTTGAGATTATAAAACCATTTAAAGCTAGAAATAAGCCATTAGAAGGAATGGGTGACTATAAGT
1 TTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAAGAATGGGTGACTATAAAT
* * * * * *
8123 GGACTTTTTTTGCTAATGAATACTTTTTTCTTTATGTTTCTTGAGGTAGACATTCAATTATAG-C
66 GGACTTTTCTTGCCAATGAATGCTTTTTTCTTCACGTTTCTTAAGGTAGACATTCAATTATAGTC
* * **
8187 TTGTTTTAACCAAAATTACAAAAAAATTCAACTTAAAATCAA
131 -TGTTTTAACTAAAAATGTAAAAAAATTCAACTTAAAATCAA
* *********
8229 TTATAAGATTATAAAACCATTTAAAGCGAGNNNNNNNNNNNNNNNNNNNNNTTTTGAAAGAATGG
1 TTATGAGATTATAAAACCATTTAAAGCGAG------------TAATAAGGCTTTTGAAAGAATGG
* * * * * * *
8294 GTGACAATAAATGGACTTTTCTTGCCAATGAATGCCTTTTCCTTTAGGTTGCTCAAGGTAGACAT
54 GTGACTATAAATGGACTTTTCTTGCCAATGAATGCTTTTTTCTTCACGTTTCTTAAGGTAGACAT
* *
8359 TCAATTATAGTTTGTTTT-ACTCAAAAATGTAAAAATATTCAACTTAAAATCAA
119 TCAATTATAGTCTGTTTTAACT-AAAAATGTAAAAAAATTCAACTTAAAATCAA
********** *
8412 TTATGAGATTATNNNNNNNNNNAAAGCGAGTAATAAAGCTTTT-AAAGGAATGGGTGACTATAAA
1 TTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAA-GAATGGGTGACTATAAA
* * * * *
8476 TGGCCTTTTCTTGTCAATGAATGCTTTTTTCTTCATGTTTCTTAAGATAGACATTCAATTATTGT
65 TGGACTTTTCTTGCCAATGAATGCTTTTTTCTTCACGTTTCTTAAGGTAGACATTCAATTATAGT
* * * ** * * * *
8541 TTTTTTTAACCAAAAATGCGAAAAACTTGAACTTAAATTCGA
130 CTGTTTTAACTAAAAATGTAAAAAAATTCAACTTAAAATCAA
* * *
8583 TTATGAGATTATAAAACCATTGAAAGCGAGTAACAAGGCTTTTGAAAGAATGGGTGACTATAATT
1 TTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAAGAATGGGTGACTATAAAT
* * ** * * *
8648 GGACTTTT-TTTCTCAATGAATGATTTTTTAAT-ACATTTCTCAAGGCACG-CATTCAATTATAG
66 GGACTTTTCTTGC-CAATGAATGCTTTTTTCTTCACGTTTCTTAAGGTA-GACATTCAATTATAG
* * * *
8710 TCTATGTTAA-TGAAAAATGTAAAAATATTAAACTTAAAATCAA
129 TCTGTTTTAACT-AAAAATGTAAAAAAATTCAACTTAAAATCAA
* * * *
8753 TTATGAAATTATAAAACCATTTAAAGCGAGGAATAAGGCTTTTGAAGGAATGAGTGACTATAAAT
1 TTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAAGAATGGGTGACTATAAAT
** ** * * * * * *
8818 GGGTTTTTCTTATCAATGAATGC-TTTTTCTTCATGTTTTTTGAGGTAAACATTCAATTATTGTT
66 GGACTTTTCTTGCCAATGAATGCTTTTTTCTTCACGTTTCTTAAGGTAGACATTCAATTATAGTC
* * * *
8882 TGTTTTAACCAAAAATGTAAAAAAATTTAACTTAAATTTGAA
131 TGTTTTAACTAAAAATGTAAAAAAATTCAACTTAAA-ATCAA
** * *
8924 -TATGAGATTATAAAACCATTTAAAATGAGTAATAAGGCTTTTGAATA-AATAGGTGACTATAAT
1 TTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAA-AGAATGGGTGACTATAAA
* * * * * * *
8987 TAGACTTTTTTTTCTCAATGAATGGCTTTTTT-GT-ACATTTCTCAAGGCA-AGCATTCAATTAT
65 TGGACTTTTCTTGC-CAATGAAT-GCTTTTTTCTTCACGTTTCTTAAGGTAGA-CATTCAATTAT
* ********** * *
9049 AGTCTATNNNNNNNNNNAATATAAAAAAATTAAACTTAAAATCAA
127 AGTCTGTTTTAACTAAAAATGTAAAAAAATTCAACTTAAAATCAA
* * ***********
9094 TTATAAAATTAT-AAACCTATTTAAAGCGAGTAATAAGGCTTNNNNNNNNNNAGGTGACTATAAA
1 TTATGAGATTATAAAACC-ATTTAAAGCGAGTAATAAGGCTTTTGAAAGAATGGGTGACTATAAA
* * * * *
9158 TGGACTTTTTTTACCAATGAATAG-TCTTTTT-TTCACGTTTCTCATGGTAGACATTCATTTACT
65 TGGACTTTTCTTGCCAATGAAT-GCT-TTTTTCTTCACGTTTCTTAAGGTAGACATTCAATTA-T
* * *
9221 -GTCTATTTTAACTAAAAAAAGTAAAATAATTCAACTTAAAATCAA
127 AGTCTGTTTTAACT-AAAAATGTAAAAAAATTCAACTTAAAATCAA
** * * * *
9266 TTATGAGATTATAAAAGTATTTAAAGCAAGTAATAAAGCTTTTAAAAGAATGGGTGTCTATAAAT
1 TTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAAGAATGGGTGACTATAAAT
* * * * * * *
9331 GGACTTTTCTT-CTCATTGAACGGC-TTTTTCTACACGTTTCTTGATGCAGGCATTCAATTATAG
66 GGACTTTTCTTGC-CAATGAA-TGCTTTTTTCTTCACGTTTCTTAAGGTAGACATTCAATTATAG
* * * *
9394 TCTATTTTAA-TAAAAATATAAAACAATTTAACTTAAAATCAA
129 TCTGTTTTAACTAAAAATGTAAAAAAATTCAACTTAAAATCAA
* * * **********
9436 TTGTAAGATTATAAAACTATTTAAAGCGAGTAATAAGGCTTTTGNNNNNNNNNNTGACTATAAAT
1 TTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAAGAATGGGTGACTATAAAT
* * * * * * * *
9501 GGACTTTTCTTTCCAATGAATGCCTTTCTCTTCACATTTTTTGAGGTAAACATTCAATTATAATC
66 GGACTTTTCTTGCCAATGAATGCTTTTTTCTTCACGTTTCTTAAGGTAGACATTCAATTATAGTC
* * * *** *
9566 AGTTTTAACCT-ATAATGTAAAAAAAAATGGGCCTAAAATCAA
131 TGTTTTAA-CTAAAAATGT-AAAAAAATTCAACTTAAAATCAA
* * * **********
9608 TTTTGAGATTATAAAACTATTTAAAGCGAGCAATAAGNNNNNNNNNNGAATGGGTGACTATAAAT
1 TTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAAGAATGGGTGACTATAAAT
* * * * * * * * *
9673 GGACTTTTTTTTCCAATGAATGCCTTTCTCTTCATGTTTTTTGAGGTAAACATTCAATTATAATC
66 GGACTTTTCTTGCCAATGAATGCTTTTTTCTTCACGTTTCTTAAGGTAGACATTCAATTATAGTC
* * * *
9738 TGTTTTAACCAATAATATG-AAAAAAATTGAACCTAAAATTAA
131 TGTTTTAACTAA-AA-ATGTAAAAAAATTCAACTTAAAATCAA
* * * * * * * **
9780 TTTTGAGATTATAAAATCATTTAAAGTGAGTAATAATGCTCTT-ATAGGAATAGAAGACTATAAA
1 TTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGA-AAGAATGGGTGACTATAAA
* * * * * *
9844 TGGACATTTCTTACCCATGAATGCTTTTTTCTTCACATTTCTTGAGGTAGACATTCAAATATAGT
65 TGGACTTTTCTTGCCAATGAATGCTTTTTTCTTCACGTTTCTTAAGGTAGACATTCAATTATAGT
* * * *
9909 TTGTTTTAACCAAAAATAT-AAACAATTCAACTTAAAATCAA
130 CTGTTTTAACTAAAAATGTAAAAAAATTCAACTTAAAATCAA
* * * * *
9950 TTATGATATTATAAACCCATTTGAAA-CGAGTAGTAAGACTTTTGAAGGAATGGGTGACTATAAA
1 TTATGAGATTATAAAACCATTT-AAAGCGAGTAATAAGGCTTTTGAAAGAATGGGTGACTATAAA
** * * * ** * * ** *
10014 TAAATTTTTTTTTACCAAAAAATACCTTTTTCTTCACGTTTC-TAGAGAAAGACATTCAATTCTA
65 TGGA-CTTTTCTTGCCAATGAATGCTTTTTTCTTCACGTTTCTTA-AGGTAGACATTCAATTATA
* * **
10078 GTATGTTTTAAC-CAAAATGTAAAAGCATTCAACTT-AAATCAA
128 GTCTGTTTTAACTAAAAATGTAAAAAAATTCAACTTAAAATCAA
* ** * *
10120 TTATGAGCTTATAAAACCATTTAAAGCGAGTAATAAGAATTTCGAAGGAATGGGTGACTATAAAT
1 TTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAAGAATGGGTGACTATAAAT
********** * * * * *** *
10185 GNNNNNNNNNNGCCAATGAATGCCTTTTTCTTCTCATTTTTTGTTGTAGACATTCAATTATAATC
66 GGACTTTTCTTGCCAATGAATGCTTTTTTCTTCACGTTTCTTAAGGTAGACATTCAATTATAGTC
* *
10250 TGTTTTAACAAAAAATG-AACAAATATTCAAC-TAAAATCAA
131 TGTTTTAACTAAAAATGTAA-AAAAATTCAACTTAAAATCAA
* ********** * * * *
10290 TTATGAGAATATAAAACCATTTANNNNNNNNNNTAAAGCTTTTGAAAGAATGAGAGACTATAAAA
1 TTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAAGAATGGGTGACTATAAAT
* ** * ** *
10355 GGACTTTTCTTGCTAATGAATG-TGTTTTTCAACATGTTTCCCAAGGTCAG-CATTTAATTATAG
66 GGACTTTTCTTGCCAATGAATGCT-TTTTTCTTCACGTTTCTTAAGGT-AGACATTCAATTATAG
*
10418 -CTTGTTTTAA-TGAAAAATAT-AAAAAATTCAACTTAAAATCAA
129 TC-TGTTTTAACT-AAAAATGTAAAAAAATTCAACTTAAAATCAA
********** * * *
10460 TTNNNNNNNNNNAAAACCATTTAAAGCGAGTAATAAGGATTTTGAAAGAATGAGTAACTATAAAT
1 TTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAAGAATGGGTGACTATAAAT
* * * * * * ** * * * * *
10525 AGACTTTTCTGGTCAATAAATGCCTTTTT-TTCATGTTTCTCGATGTAGACATTTAACTCTAGTG
66 GGACTTTTCTTGCCAATGAATGCTTTTTTCTTCACGTTTCTTAAGGTAGACATTCAATTATAGTC
* * * *
10589 TATTTTAACTAAAAATGCAAAACAATTAAACTTAAAATCAA
131 TGTTTTAACTAAAAATGTAAAAAAATTCAACTTAAAATCAA
********** * **
10630 TTANNNNNNNNNNAAACCATTTAAAGCAAGTAATAAGAATTTTGAAAGAATGGGTGACTATAAAT
1 TTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAAGAATGGGTGACTATAAAT
* * * * *
10695 AGATTTTTCTTGTCAATGAATG-TCTTTTTCTTCATGTTTC-TAGAGGTAGACATTCAATTATTG
66 GGACTTTTCTTGCCAATGAATGCT-TTTTTCTTCACGTTTCTTA-AGGTAGACATTCAATTATAG
10758 TCTGTTTTAAC-AAAAAGTGTAAAAAAATTCAACTTAAAATCAA
129 TCTGTTTTAACTAAAAA-TGTAAAAAAATTCAACTTAAAATCAA
* * * *
10801 TTATGAGATTATAAAA-TAGTTTAAAGCGAGTAATAAGACTTTTGAAAGAATGAGTGACTATATA
1 TTATGAGATTATAAAACCA-TTTAAAGCGAGTAATAAGGCTTTTGAAAGAATGGGTGACTATAAA
* * * * * * * *
10865 TGGACTTTTCTTGCCCATGAATACTTTTTTCTTCACATTTGTTGAGGTAAATATTTAATTATAGT
65 TGGACTTTTCTTGCCAATGAATGCTTTTTTCTTCACGTTTCTTAAGGTAGACATTCAATTATAGT
*********** *
10930 CTGTTTTAAC-CNNNNNNNNNNAAAATTCAACTTAAAATTAA
130 CTGTTTTAACTAAAAATGTAAAAAAATTCAACTTAAAATCAA
* * * * * * *
10971 TTATTAGATTATAAAACTATTTAAATCGAATAATAAGGCTTTTGAAAGAATGAGTGACTGTGAAT
1 TTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAAGAATGGGTGACTATAAAT
* * * * ** *
11036 AGACTTTTCTTGCTAGTGAATG-TCTTTTTCTTCATGTTTCTCGAGGTAGACATTTC-ATTCTAG
66 GGACTTTTCTTGCCAATGAATGCT-TTTTTCTTCACGTTTCTTAAGGTAGACA-TTCAATTATAG
* * * *
11099 TTTGTTTTAACCAAAAATGTAAAAAAAATTCAACTTTAAAGCAA
129 TCTGTTTTAACTAAAAATGT-AAAAAAATTCAACTTAAAATCAA
* * * * * ** *
11143 TTATTATATTATAAAATCAGTTAAAGCGCGTAATAAGGCTTTTGAAAGAATGAATGGCTATAAAT
1 TTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAAGAATGGGTGACTATAAAT
* * *
11208 GGACTTTTC-TG-CTAGGAATGCTTTTTTCTTCACGTTTCTTGAGGTAGACATTCAATTATAGTC
66 GGACTTTTCTTGCCAATGAATGCTTTTTTCTTCACGTTTCTTAAGGTAGACATTCAATTATAGTC
********************** *
11271 TG-TTTANNNNNNNNNNNNNNNNNNNNNNACTTAAAATGAA
131 TGTTTTAACTAAAAATGTAAAAAAATTCAACTTAAAATCAA
* * ** * *
11311 TTATGAGATTATAAAACTATTTAAAGTGAGTAATAATACTTTTGAAAGAATGAGTGACTGTAAAT
1 TTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAAGAATGGGTGACTATAAAT
* * * * * * ** * * *
11376 GAACTTTTCTT-CTCAATAAATGGTATTTTCTACATGTTTCCCAAGGCAGATATTCAATTAAAGT
66 GGACTTTTCTTGC-CAATGAATGCTTTTTTCTTCACGTTTCTTAAGGTAGACATTCAATTATAGT
* ** * * *
11440 TTGTTTTAAAGAAAAATATAAAAAAATTTAACTTATAATCAA
130 CTGTTTTAACTAAAAATGTAAAAAAATTCAACTTAAAATCAA
* * ********** * *
11482 TTATGAGATTACAAAACTATTNNNNNNNNNNAATAAGGCTTTTGAAGGAATGAGTGACTATAAAT
1 TTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAAGAATGGGTGACTATAAAT
* * * * * * * * * *
11547 AGACTTTTCTAGCTAATTAATTCCTTTTTCTTCACGTATCTTGATGTAGACA-TCTAATTATAAT
66 GGACTTTTCTTGCCAATGAATGCTTTTTTCTTCACGTTTCTTAAGGTAGACATTC-AATTATAGT
* * * * *
11611 TTGTTTTTACTAAAAAAGTAAAAAAA--AAACTTATAATCAA
130 CTGTTTTAACTAAAAATGTAAAAAAATTCAACTTAAAATCAA
* *********** *
11651 TTTTGAGATTATAAAACTNNNNNNNNNNAGTAATAAGGCTTTTGAAAGAATGAGTGA-TAATAAA
1 TTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAAGAATGGGTGACT-ATAAA
** * * * * * *
11715 TGGACTTTTCTTGCTTATAAATACATTTTTCTTCATGTTTC-TCAGTGTAGACATTCAATTATAA
65 TGGACTTTTCTTGCCAATGAATGCTTTTTTCTTCACGTTTCTTAAG-GTAGACATTCAATTATAG
* * * * *
11779 TATGTCTTAACCAAAAAGGTAAAAAAAAATTGAACTTAAAATCAA
129 TCTGTTTTAACTAAAAATGT--AAAAAAATTCAACTTAAAATCAA
* ********** * * * **
11824 TTTTNNNNNNNNNNAATCATTTAAATCGAGTAATAAGGCTTTTG-ACGAAATGGAAGACTATAAA
1 TTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAAG-AATGGGTGACTATAAA
* * * * * *
11888 TGGACTTTTCTTTCTAATGAATACTTTTTTCTTCACATTTCTAAAGGTAGACATTTAA-T-TAGT
65 TGGACTTTTCTTGCCAATGAATGCTTTTTTCTTCACGTTTCTTAAGGTAGACATTCAATTATAGT
*
11951 CTGTTTTAA-TAAAAAATGT-AAAAAATTCAAGTTAAAATCAA
130 CTGTTTTAACT-AAAAATGTAAAAAAATTCAACTTAAAATCAA
*********** *
11992 TTATGAGATTATAAAACCATTTTNNNNNNNNNNTAAGGCTTTTGAAAGAATGGGTGACTACAAAT
1 TTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAAGAATGGGTGACTATAAAT
* * * ** *
12057 GCACTTTTTTTGCCAATGAATG-TCTTTTTCTTCACGTTTCTCAAGGTAGACATTCAACAACAGT
66 GGACTTTTCTTGCCAATGAATGCT-TTTTTCTTCACGTTTCTTAAGGTAGACATTCAATTATAGT
** * * *
12121 CCATTTTAACCAAATATGCAAAAAAATTCAACTTAAAATCAA
130 CTGTTTTAACTAAAAATGTAAAAAAATTCAACTTAAAATCAA
* * ********** * *
12163 TTACGAGATTATAAAACTATTNNNNNNNNNNAATAAGGCTTTT-AAAGGAATGAGAGACTATAAA
1 TTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAA-GAATGGGTGACTATAAA
* * * ** * *** * * *
12227 TGGACTTTTCTTTCGAATAAATG-TTTTTTGCAACATGTTTCCCGATGCA-AGCATTTAATTATA
65 TGGACTTTTCTTGCCAATGAATGCTTTTTT-CTTCACGTTTCTTAAGGTAGA-CATTCAATTATA
* ** * **
12290 GTCTATTTTAAC-AAAAAAATATAAAAAATTTAACTTAAAATCNN
128 GTCTGTTTTAACTAAAAATGTA-AAAAAATTCAACTTAAAATCAA
******** ** ** * * *
12334 NNNNNNNNTTATAAAAGTATTTAAAGCGAGTAATAAGAATTTTGAAGGAATGAGTGATTATAAAT
1 TTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAAGAATGGGTGACTATAAAT
* * * * *
12399 GGACTTTTCTTGCCAATGAATGTCATTTTT-TTCACGTTTGTCAAGGTAAACATTCAACTATAGT
66 GGACTTTTCTTGCCAATGAATG-CTTTTTTCTTCACGTTTCTTAAGGTAGACATTCAATTATAGT
* * * **
12463 CTGTTTTAACTAATAATGTAAAACAATTCTACTGCAAATCAA
130 CTGTTTTAACTAAAAATGTAAAAAAATTCAACTTAAAATCAA
* * ** * * * *
12505 TTATGGGATTATAAAGCCATTTAAAGTAAGTAATATGACTTTTTAAAGAATGTGTGACTATAAAT
1 TTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAAGAATGGGTGACTATAAAT
** * * * * * *
12570 GGACTTTTCTTGCCGCTGAATGTTTTTTTCTTCATGTTT-TTCGAGGTAAACACTCAATTGTAGT
66 GGACTTTTCTTGCCAATGAATGCTTTTTTCTTCACGTTTCTT-AAGGTAGACATTCAATTATAGT
* *
12634 CTATTTTGACTAAAAATGTAAAAAAATTCAACTTAAAATCAA
130 CTGTTTTAACTAAAAATGTAAAAAAATTCAACTTAAAATCAA
********** * * *
12676 TTNNNNNNNNNNAAAACTATTTAAAGCGAGTAATAAGGCTTTTGAAAGAATGAGTGATTATAAAT
1 TTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAAGAATGGGTGACTATAAAT
* * * * * *
12741 -TACCTTTTCTTGCCAATGAATGTTTTTTTCTTCACGCTTCTCATGGTAGACATTTAATTATAGT
66 GGA-CTTTTCTTGCCAATGAATGCTTTTTTCTTCACGTTTCTTAAGGTAGACATTCAATTATAGT
* * *
12805 CTGTTTTAA-TGAAAACA-AT-AAAAAATTTAGCTTAAAATCAA
130 CTGTTTTAACT-AAAA-ATGTAAAAAAATTCAACTTAAAATCAA
********** * * * *
12846 TTNNNNNNNNNNAAAACTATTTAAAGTGAGTAATAATGG-TTTTGAAGGAATGGGTGACTACAAA
1 TTATGAGATTATAAAACCATTTAAAGCGAGTAATAA-GGCTTTTGAAAGAATGGGTGACTATAAA
* * ** * ** * *
12910 TAGACTTTTCATGCCAATGAATATTTTTTTCTTCACGGTTCTCGAGGTAGACATTCAAGTATTGT
65 TGGACTTTTCTTGCCAATGAATGCTTTTTTCTTCACGTTTCTTAAGGTAGACATTCAATTATAGT
* **********
12975 CTGTTTTAACCAAAAATGTAANNNNNNNNNNCTTAAAATCAA
130 CTGTTTTAACTAAAAATGTAAAAAAATTCAACTTAAAATCAA
* ** ** * * * **
13017 TTATGGGATTATAAAATTATTTAAAGTAAGTAACAATGCTTTTGAAAGAATTGGTGACTGCAAAT
1 TTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAAGAATGGGTGACTATAAAT
** * * * *
13082 GGACTTTTCTCACCAATGAAT-ATCTTTGTCTTCATGTTTCTCCAA-GTAGACATTCAATTATAG
66 GGACTTTTCTTGCCAATGAATGCT-TTTTTCTTCACGTTTCT-TAAGGTAGACATTCAATTATAG
*
13145 TCTGTTTTAACCAAAAATGTAAAAAAATTC
129 TCTGTTTTAACTAAAAATGTAAAAAAATTC
Statistics
Matches: 4768, Mismatches: 1365, Indels: 367
0.73 0.21 0.06
Matches are distributed among these distances:
167 1 0.00
168 177 0.04
169 251 0.05
170 1435 0.30
171 1880 0.39
172 628 0.13
173 174 0.04
174 85 0.02
175 8 0.00
182 2 0.00
183 127 0.03
ACGTcount: A:0.37, C:0.11, G:0.13, T:0.35
Consensus pattern (171 bp):
TTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAAGAATGGGTGACTATAAAT
GGACTTTTCTTGCCAATGAATGCTTTTTTCTTCACGTTTCTTAAGGTAGACATTCAATTATAGTC
TGTTTTAACTAAAAATGTAAAAAAATTCAACTTAAAATCAA
Found at i:8114 original size:516 final size:504
Alignment explanation
Indices: 7198--8258 Score: 1050
Period size: 516 Copynumber: 2.1 Consensus size: 504
7188 NNNNNNAATT
* * * * ** *
7198 AATTATGAGATTATAAAACGATTT-TAAGCGAGTAGTAAGACTTTTGAAGGAATGGGTGACTATA
1 AATTATGAGATTATAAAACCATTTAAAAGCGAGTAATAAGACTTTTAAAAAAATAGGTGACTATA
* * * *
7262 AATAGACTTTTCTTATCAATGAATGTCTTTTTCTTTATGTTTCTCGAGGTAAAAGTTTAAATATA
66 AATAGAATTTTCTTACCAATGAATGTCTTTTTCTTCATGTTTCTCAAGGTAAAAGTTTAAATATA
* *
7327 ATCTATTTTAAGCAAAAAAGTAAAAAAATTAAACTTAAAATCAATNNNNNNNNNNTAAAACCATT
131 ATCTATTTTAACCAAAAAAGTAAAAAAATTAAACTTAAAATCAAT----------CAAAACCATT
* * * * * *
7392 TAAAGTGAGTAATAAGGCTTTCCAAGGCATGTGAGACTATAAATGGACTTTTCTTGCCAATTAAT
186 TAAAATGAGTAATAAAGCTTTCCAAAGAATGTGAGACTATAAATGGACTTTTCATGCCAATAAAT
** ** * *
7457 ACTTTTTTCTTCACGTTTCTTAAGGTAGACATTTAATTATAGTTTTTTGTAACTAAAAATATAAA
251 ACTTTTTTCAACACGTTTCCCAAGGTAGACATTTAATTATAATTGTTTGTAACTAAAAATATAAA
* * * * * ******
7522 AAAATTCAACTTAAAATCAATTATGATATTACAAAATAATTTAAAGCGAGTAATAAGGCNNNNNN
316 AAAATTCAACATAAAATCAATTATGAGATTACAAAACAATTTAAAGCGAGAAATAAGCCATTAGA
***** *
7587 NNNNTTGGGTGACTATAAATGGACTTTTCTTCCCAATGTATAACTTTTTT-GAGATGTTTCCTAA
381 AGGAATGGGTGACTATAAATGGACTTTTCTTCCCAATGAAT-ACTTTTTTCGAGATGTTTCCTAA
**
7651 GGTA-AGCACTCAATTATAG-TATGTTTTAATGAAAATGTAAAAAAAAAAATCAACATAAAATC
445 GGTAGA-CACTCAATTATAGCT-TGTTTTAACCAAAAT-T-AAAAAAAAAATCAACATAAAATC
* * *
7713 AATTATGAGATTATAGAACCATTTAAAAGTGAGTAATAAGGCTTTTAAAAAAATAGGTGACTATA
1 AATTATGAGATTATAAAACCATTTAAAAGCGAGTAATAAGACTTTTAAAAAAATAGGTGACTATA
* *
7778 AATAGAATTTTCTTACCAATGAATGTCTTTTTCTTCATGTTTCTTAAGGTAAATA-TTTAATTAT
66 AATAGAATTTTCTTACCAATGAATGTCTTTTTCTTCATGTTTCTCAAGGTAAA-AGTTTAAATAT
* * *
7842 AATCTGTTTTAACCAAAAATGTAAAAACAATTGAACTTAAAATCAATNNNNNNNNNNCAAAACCA
130 AATCTATTTTAACCAAAAAAGTAAAAA-AATTAAACTTAAAATCAAT----------CAAAACCA
**
7907 TTTAAAATGAGTAATAAAGCTTTTGAAAGAATAG-GAGACTATAAATGGACTTTTCAT-CCAAAT
184 TTTAAAATGAGTAATAAAGCTTTCCAAAGAAT-GTGAGACTATAAATGGACTTTTCATGCC-AAT
* *
7970 AAATATTTTTTTCAACACGTTTCCCAA-GTCA-AGTATTTAATTATAATCTGTTT-TAA-TGAAA
247 AAATACTTTTTTCAACACGTTTCCCAAGGT-AGA-CATTTAATTATAAT-TGTTTGTAACT-AAA
* * * * * *
8031 AATGT-AAAAAATTCAACATAAAATCTATTTTGAGATTATAAAACCATTTAAAGCTAGAAATAAG
308 AATATAAAAAAATTCAACATAAAATCAATTATGAGATTACAAAACAATTTAAAGCGAGAAATAAG
* * * * ***
8095 CCATTAGAAGGAATGGGTGACTATAAGTGGACTTTTTTTGCTAATGAATACTTTTTTCTTTATGT
373 CCATTAGAAGGAATGGGTGACTATAAATGGACTTTTCTTCCCAATGAATACTTTTTTCGAGATGT
* * * * * *
8160 TTCTTGAGGTAGACATTCAATTATAGCTTGTTTTAACCAAAATTACAAAAAAATTCAACTTAAAA
438 TTCCTAAGGTAGACACTCAATTATAGCTTGTTTTAACCAAAATTAAAAAAAAAATCAACATAAAA
8225 TC
503 TC
*
8227 AATTATAAGATTATAAAACCATTT-AAAGCGAG
1 AATTATGAGATTATAAAACCATTTAAAAGCGAG
8259 NNNNNNNNNN
Statistics
Matches: 456, Mismatches: 78, Indels: 26
0.81 0.14 0.05
Matches are distributed among these distances:
513 7 0.02
514 42 0.09
515 31 0.07
516 238 0.52
517 133 0.29
518 5 0.01
ACGTcount: A:0.39, C:0.11, G:0.12, T:0.35
Consensus pattern (504 bp):
AATTATGAGATTATAAAACCATTTAAAAGCGAGTAATAAGACTTTTAAAAAAATAGGTGACTATA
AATAGAATTTTCTTACCAATGAATGTCTTTTTCTTCATGTTTCTCAAGGTAAAAGTTTAAATATA
ATCTATTTTAACCAAAAAAGTAAAAAAATTAAACTTAAAATCAATCAAAACCATTTAAAATGAGT
AATAAAGCTTTCCAAAGAATGTGAGACTATAAATGGACTTTTCATGCCAATAAATACTTTTTTCA
ACACGTTTCCCAAGGTAGACATTTAATTATAATTGTTTGTAACTAAAAATATAAAAAAATTCAAC
ATAAAATCAATTATGAGATTACAAAACAATTTAAAGCGAGAAATAAGCCATTAGAAGGAATGGGT
GACTATAAATGGACTTTTCTTCCCAATGAATACTTTTTTCGAGATGTTTCCTAAGGTAGACACTC
AATTATAGCTTGTTTTAACCAAAATTAAAAAAAAAATCAACATAAAATC
Found at i:9715 original size:172 final size:162
Alignment explanation
Indices: 9490--9964 Score: 434
Period size: 172 Copynumber: 2.8 Consensus size: 162
9480 NNNNNNNNNN
9490 TGACTATAAATGGACTTTTCTTTCCAATGAATGCCTTTCTCTTCACATTTTTTGAGGTAAACATT
1 TGACTATAAATGGACTTTTCTTTCCAATGAATGCCTTTCTCTTCACATTTTTTGAGGTAAACATT
* * **
9555 CAATTATAATCAGTTTTAACCTATAATGTAAAAAAAAATGGGCCTAAAATCAATTTTGAGATTAT
66 CAATTATAATCAGTTTTAACCAATAATATAAAAAAAAATGAACCTAAAATCAATTTTGAGATTAT
9620 AAAA-CTATTTAAAGCGAGCAATAAGNNNNNNNNNNGAATGGG
131 AAAATC-ATTTAAAGCGAGCAATAAG----------GAATGGG
* **
9662 TGACTATAAATGGACTTTTTTTTCCAATGAATGCCTTTCTCTTCATGTTTTTTGAGGTAAACATT
1 TGACTATAAATGGACTTTTCTTTCCAATGAATGCCTTTCTCTTCACATTTTTTGAGGTAAACATT
* * * *
9727 CAATTATAATCTGTTTTAACCAATAATATGAAAAAAATTGAACCTAAAATTAATTTTGAGATTAT
66 CAATTATAATCAGTTTTAACCAATAATATAAAAAAAAATGAACCTAAAATCAATTTTGAGATTAT
* * * *
9792 AAAATCATTTAAAGTGAGTAATAATGCTCTTATAGGAATAGA
131 AAAATCATTTAAAGCGAG---CAA------TA-AGGAATGGG
* * * * * * * *
9834 AGACTATAAATGGACATTTCTTACCCATGAATGCTTTTTTCTTCACATTTCTTGAGGTAGACATT
1 TGACTATAAATGGACTTTTCTTTCCAATGAATGCCTTTCTCTTCACATTTTTTGAGGTAAACATT
* * ** * * * * * * *
9899 CAAATATAGTTTGTTTTAACCAA-AA-ATATAAACAATTCAACTTAAAATCAATTATGATATTAT
66 CAATTATAATCAGTTTTAACCAATAATATAAAAAAAAATGAACCTAAAATCAATTTTGAGATTAT
9962 AAA
131 AAA
9965 CCCATTTGAA
Statistics
Matches: 255, Mismatches: 37, Indels: 24
0.81 0.12 0.08
Matches are distributed among these distances:
170 33 0.13
171 2 0.01
172 213 0.84
173 1 0.00
175 2 0.01
181 2 0.01
182 2 0.01
ACGTcount: A:0.37, C:0.13, G:0.12, T:0.36
Consensus pattern (162 bp):
TGACTATAAATGGACTTTTCTTTCCAATGAATGCCTTTCTCTTCACATTTTTTGAGGTAAACATT
CAATTATAATCAGTTTTAACCAATAATATAAAAAAAAATGAACCTAAAATCAATTTTGAGATTAT
AAAATCATTTAAAGCGAGCAATAAGGAATGGG
Found at i:12077 original size:168 final size:161
Alignment explanation
Indices: 11857--12179 Score: 307
Period size: 168 Copynumber: 2.0 Consensus size: 161
11847 AATCGAGTAA
* * * *
11857 TAAGGCTTTTGACGAAATGGAAGACTATAAATGGACTTTTCTTTCTAATGAATACT-TTTTTCTT
1 TAAGGCTTTTGAAGAAATGGAAGACTACAAATGCACTTTTCTTTCCAATGAAT-CTCTTTTTCTT
* ** ** * * *
11921 CACATTTCTAAAGGTAGACATT-TA-ATTAGTCTGTTTTAATAAAAAATG-TAAAAAATTCAAGT
65 CACATTTCTAAAGGTAGACATTCAACAACAGTCCATTTTAACAAAAAATGCAAAAAAATTCAACT
*
11983 TAAAATCAATTATGAGATTATAAAACCATTTT
130 TAAAATCAATTACGAGATTATAAAACCATTTT
**
12015 NNNNNNNNNNTAAGGCTTTTGAA-AGAATGGGTGACTACAAATGCACTTTT-TTTGCCAATGAAT
1 ----------TAAGGCTTTTGAAGA-AATGGAAGACTACAAATGCACTTTTCTTT-CCAATGAAT
* * * * *
12078 GTCTTTTTCTTCACGTTTCTCAAGGTAGACATTCAACAACAGTCCATTTTAACCAAATATGCAAA
54 CTCTTTTTCTTCACATTTCTAAAGGTAGACATTCAACAACAGTCCATTTTAACAAAAAATGCAAA
12143 AAAATTCAACTTAAAATCAATTACGAGATTATAAAAC
119 AAAATTCAACTTAAAATCAATTACGAGATTATAAAAC
12180 TATTNNNNNN
Statistics
Matches: 129, Mismatches: 20, Indels: 9
0.82 0.13 0.06
Matches are distributed among these distances:
167 5 0.04
168 69 0.53
169 1 0.01
170 17 0.13
171 37 0.29
ACGTcount: A:0.37, C:0.14, G:0.12, T:0.34
Consensus pattern (161 bp):
TAAGGCTTTTGAAGAAATGGAAGACTACAAATGCACTTTTCTTTCCAATGAATCTCTTTTTCTTC
ACATTTCTAAAGGTAGACATTCAACAACAGTCCATTTTAACAAAAAATGCAAAAAAATTCAACTT
AAAATCAATTACGAGATTATAAAACCATTTT
Done.