Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399583.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2837.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5303
ACGTcount: A:0.16, C:0.07, G:0.05, T:0.18

Warning! 2829 characters in sequence are not A, C, G, or T


Found at i:361 original size:171 final size:171

Alignment explanation


    Indices: 9--574  Score: 557
    Period size: 171  Copynumber: 3.3  Consensus size: 171

          1 GCCTTTTT

                               *                  *      * *                 
          9 ACTCG-TTCTAAATGGTTTCATAATCTCATAATTAATTATAAGTTCACTTTTTTTATATTTTTCT
          1 ACTCGCTT-TAAATGGTTTTATAATCTCATAATTAATTTTAAGTTGAATTTTTTTATATTTTT-T

                   *              *         *     *             *            
         73 -TTAAAACAGACTATAATTGAAAGTCTGCCTCTAGAAAAGTGAAGAAAAAAGCATTCATTGACAA
         64 ATTAAAAAAGACTATAATTGAATGTCTGCCTCAAGAAACGTGAAGAAAAAAGTATTCATTGACAA

                               * *            * *  *  *
        137 GAAAAGTCCATTTATAGCCTCTCATTCCTTCAAAGGCCTTATT
        129 GAAAAGTCCATTTATAGCCACCCATTCCTTCAAAAGACTGATC

               *          *          **      *                               
        180 ACTTGCTTTAAATGCTTTTATAATCAAATAATTCATTTTAAGTTGAATTTTTTTATATTTTTTAT
          1 ACTCGCTTTAAATGGTTTTATAATCTCATAATTAATTTTAAGTTGAATTTTTTTATATTTTTTAT

                 *    *  *     * *   **   *                               *  
        245 TAAAATAGACAATTATTGACTCTCTATCTCGAGAAACGTGAAGAAAAAAGTATTCATT-ATCCAG
         66 TAAAAAAGACTATAATTGAATGTCTGCCTCAAGAAACGTGAAGAAAAAAGTATTCATTGA-CAAG

                  *         *         *            *  
        309 AAAAGTGCATTTATAGTCACCCATTCTTTCAAAAGACTGCTC
        130 AAAAGTCCATTTATAGCCACCCATTCCTTCAAAAGACTGATC

            *                  *             *              *             *  
        351 GCTCGCTTTAAATGGTTTTCTAATCTCATAATTGATTTTAAGTTGAATGTTTTTATATTTTTCAT
          1 ACTCGCTTTAAATGGTTTTATAATCTCATAATTAATTTTAAGTTGAATTTTTTTATATTTTTTAT

                                                 *                 *    *    
        416 TAAAAAAGACTATAATTGAATGTCTGCCTCAAGAAACATGAAGAAAAAAGTATTCGTTGATATA-
         66 TAAAAAAGACTATAATTGAATGTCTGCCTCAAGAAACGTGAAGAAAAAAGTATTCATTGACA-AG

                         *    * *           *  *  ** *
        480 AAAAGTCCATTTAGAGCCTCTCATTCCTTCAACAGCCTTTTT
        130 AAAAGTCCATTTATAGCCACCCATTCCTTCAAAAGACTGATC

                 *         *    *         *   *          *        
        522 ACTC-ATTCTAAATGTTTTTGTAATCTCATTATTGATTTTAAGTTTAATTTTTT
          1 ACTCGCTT-TAAATGGTTTTATAATCTCATAATTAATTTTAAGTTGAATTTTTT

        575 NNNNNNNNNN


Statistics
Matches: 319,  Mismatches: 70, Indels: 12
        0.80            0.17        0.03

Matches are distributed among these distances:
 170    4  0.01
 171  311  0.97
 172    4  0.01

ACGTcount: A:0.34, C:0.15, G:0.11, T:0.40


Consensus pattern (171 bp):   
ACTCGCTTTAAATGGTTTTATAATCTCATAATTAATTTTAAGTTGAATTTTTTTATATTTTTTAT
TAAAAAAGACTATAATTGAATGTCTGCCTCAAGAAACGTGAAGAAAAAAGTATTCATTGACAAGA
AAAGTCCATTTATAGCCACCCATTCCTTCAAAAGACTGATC
Done.