Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399585.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2839.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 739

Length: 1232
ACGTcount: A:0.31, C:0.12, G:0.11, T:0.33

Warning! 150 characters in sequence are not A, C, G, or T


Found at i:1020 original size:171 final size:171

Alignment explanation


    Indices: 702--1022  Score: 391
    Period size: 171  Copynumber: 1.9  Consensus size: 171

        692 NNNNNNNNNN

                        *    *      *                               **   *   
        702 TCTCACAATTGATTTTAGGTTGAATTTTTTTACATTTTTTATTAAAACATATTATATTTGATTGT
          1 TCTCACAATTGAGTTTAAGTTGAAATTTTTTACATTTTTTATTAAAACATATTATAAGTGAATGT

                                               *                         *   
        767 CTACCTTAGGAAATATACAAAAAAAGCCATTCATTGAGAAGAAAAGTTCATTTATAGTCACTCTT
         66 CTACCTTAGGAAATATACAAAAAAAGCCATTCATTAAGAAGAAAAGTTCATTTATAGTCACCCTT

               *                                     
        832 TCTTTCAAAAGGCTTATTACCCGCTTTTAATGGTTATATAA
        131 TCTGTCAAAAGGCTTATTACCCGCTTTTAATGGTTATATAA

                 *                                   *                       
        873 TCTCATAATTGAGTTTAAGTTGAAATTTTTT-CTATTTTTTGTT-AAA-ATAGTCTATAAGTGAA
          1 TCTCACAATTGAGTTTAAGTTGAAATTTTTTAC-ATTTTTTATTAAAACATA-T-TATAAGTGAA

                  *   *        **     ** *                             *     
        935 TGTCTATCTTGGGAAATATGTAAAAATGGTCATTCATTAAGAA-AAAAGTTCTATTTATGGTCAC
         63 TGTCTACCTTAGGAAATATACAAAAAAAGCCATTCATTAAGAAGAAAAGTTC-ATTTATAGTCAC

                                     
        999 CCATTTC-GTCAAAAGGCTTATTAC
        127 CC-TTTCTGTCAAAAGGCTTATTAC

       1023 TTGCTTTAAA


Statistics
Matches: 126,  Mismatches: 19, Indels: 10
        0.81            0.12        0.06

Matches are distributed among these distances:
 169    3  0.02
 170   13  0.10
 171  106  0.84
 172    4  0.03

ACGTcount: A:0.34, C:0.12, G:0.13, T:0.41


Consensus pattern (171 bp):   
TCTCACAATTGAGTTTAAGTTGAAATTTTTTACATTTTTTATTAAAACATATTATAAGTGAATGT
CTACCTTAGGAAATATACAAAAAAAGCCATTCATTAAGAAGAAAAGTTCATTTATAGTCACCCTT
TCTGTCAAAAGGCTTATTACCCGCTTTTAATGGTTATATAA
Done.