Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399589.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2842.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2234
ACGTcount: A:0.20, C:0.10, G:0.09, T:0.23

Warning! 848 characters in sequence are not A, C, G, or T


Found at i:361 original size:170 final size:172

Alignment explanation


    Indices: 70--568  Score: 589
    Period size: 172  Copynumber: 2.9  Consensus size: 172

         60 GTTGGCCTCA

                   *                                     *                 * 
         70 GGAAACAAGAAGAAAAAGCCATTCATTGGCAAGAAAAGTCCATTTGTAGTCACCCATACCTTCGA
          1 GGAAACAGGAAGAAAAAGCCATTCATTGGCAAGAAAAGTCCATTTATAGTCACCCATACCTTCCA

             *      *    *               * *             *                   
        135 AGGCCTTACTACTTGCTTTAAATGGTTTTCTAATCTCATAATTGACTTTAAGTTGAA-TCTTTTA
         66 AAGCCTTATTACTCGCTTTAAATGGTTTTATCATCTCATAATTGATTTTAAGTTGAATTCTTTTA

              *    * **                   *           
        199 CACTTTTGGCCAAAACAGATTATAATTT-AGTGTTTACC-TC
        131 CATTTTTAGTTAAAACAGATTATAATTTGAATGTTTACCTTC

                                                                 *   * *     
        239 GGAAA-ATGTGAAGAAAAAGCCATTCATTGGCAAGAAAAGTCCATTTATAGTCGCCCCTGCCTTC
          1 GGAAACA-G-GAAGAAAAAGCCATTCATTGGCAAGAAAAGTCCATTTATAGTCACCCATACCTTC

                        *   *                  *               *             
        303 CAAAGCCTTATTGCTCACTTTAAATGGTTTTATCAGCTCATAATTGATTTTTAGTTGAATTTCTT
         64 CAAAGCCTTATTACTCGCTTTAAATGGTTTTATCATCTCATAATTGATTTTAAGTTGAA-TTCTT

               *       *            *              *    *
        368 TTATATTTTTATTTAAAACAGATTGT-ATTTGAATGTTTGCCTTT
        128 TTACATTTTTAGTTAAAACAGATTATAATTTGAATGTTTACCTTC

                      *     *  *        *         *                  *    *  
        412 GGAAACAGGAGGAAAAGGCTATTCATTGACAAGAAAAGCCCATTTATAGTCACCCATTCCTTTC-
          1 GGAAACAGGAAGAAAAAGCCATTCATTGGCAAGAAAAGTCCATTTATAGTCACCCATACCTTCCA

                                                  * *                        
        476 AAGACCTTATTACTCGCTTTAAATGGTTTTA-CAATCTTACAATTGATTTTAAGTTGAATTCTTT
         66 AAG-CCTTATTACTCGCTTTAAATGGTTTTATC-ATCTCATAATTGATTTTAAGTTGAATTCTTT

                                         
        540 TACATTTTTAGTTAAAACAGATTATAATT
        129 TACATTTTTAGTTAAAACAGATTATAATT

        569 GNNNNNNNNN


Statistics
Matches: 276,  Mismatches: 44, Indels: 17
        0.82            0.13        0.05

Matches are distributed among these distances:
 168    1  0.00
 169    5  0.02
 170   99  0.36
 171   36  0.13
 172  127  0.46
 173    7  0.03
 174    1  0.00

ACGTcount: A:0.32, C:0.17, G:0.14, T:0.37


Consensus pattern (172 bp):   
GGAAACAGGAAGAAAAAGCCATTCATTGGCAAGAAAAGTCCATTTATAGTCACCCATACCTTCCA
AAGCCTTATTACTCGCTTTAAATGGTTTTATCATCTCATAATTGATTTTAAGTTGAATTCTTTTA
CATTTTTAGTTAAAACAGATTATAATTTGAATGTTTACCTTC

Done.