Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399590.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2843.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 648

Length: 1081
ACGTcount: A:0.31, C:0.12, G:0.10, T:0.30

Warning! 189 characters in sequence are not A, C, G, or T


Found at i:782 original size:172 final size:170

Alignment explanation


    Indices: 462--831  Score: 404
    Period size: 172  Copynumber: 2.2  Consensus size: 170

        452 NNNNNNNNNG

                                     *   *        *                          
        462 ATTAAAACAGACAATAATTGAATGTCTATTTCAAGAAATGTGAAGAAAAAAGCTTTCATAGGCAA
          1 ATTAAAACAGACAATAATTGAATGTTTATCTCAAGAAACGTGAAGAAAAAA-CTTTCATAGGCAA

                    *     *    *       *                 *                   
        527 GAAAAGTCTACGTATAGCCTCCCACTCTTTCAAAAGCCTTATTACTCACTTGAAATAGTTTAATA
         65 GAAAAGTCCACGTACAGCCACCCACTCCTTCAAAAGCCTTATTACACACTTGAAATAGTTTAATA

                 *                              *    *
        592 ATCTCGTAATTGATTTTAAGTTAAATTTGTTATATATTTTTT
        130 ATCTCATAATTGATTTTAAGTTAAATTT-TTATATAGTTTTC

                   *                                                   *   * 
        634 ATTAAAATAGACAATAATTGAATGTTTATCTCAAGAAACGTGAAGGAAAAAA-TATTCTTTA-TC
          1 ATTAAAACAGACAATAATTGAATGTTTATCTCAAGAAACGTGAA-GAAAAAACT-TTC-ATAGGC

                        **     *    * *                      *         *    *
        697 AAGAAAAGTCCATTTACAGTCACCTATTCCTTCAAAAGCCTTATTACACGCTTCG-AATGGTTTT
         63 AAGAAAAGTCCACGTACAGCCACCCACTCCTTCAAAAGCCTTATTACACACTT-GAAATAGTTTA

                 *        *          **      *          
        761 ATAATGTCATAATTTATTTTAAGTTGCATTTTTTTATAGTTTTC
        127 ATAATCTCATAATTGATTTTAAGTTAAATTTTTATATAGTTTTC

                       **              
        805 ATTAAAACAGATTATAATTGAATGTTT
          1 ATTAAAACAGACAATAATTGAATGTTT

        832 GGCTTGACAA


Statistics
Matches: 164,  Mismatches: 30, Indels: 9
        0.81            0.15        0.04

Matches are distributed among these distances:
 171   35  0.21
 172  119  0.73
 173   10  0.06

ACGTcount: A:0.37, C:0.13, G:0.12, T:0.38


Consensus pattern (170 bp):   
ATTAAAACAGACAATAATTGAATGTTTATCTCAAGAAACGTGAAGAAAAAACTTTCATAGGCAAG
AAAAGTCCACGTACAGCCACCCACTCCTTCAAAAGCCTTATTACACACTTGAAATAGTTTAATAA
TCTCATAATTGATTTTAAGTTAAATTTTTATATAGTTTTC
Done.