Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018399591.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2845.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 9875
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.28
Warning! 2513 characters in sequence are not A, C, G, or T
Found at i:302 original size:171 final size:160
Alignment explanation
Indices: 10--335 Score: 298
Period size: 171 Copynumber: 2.0 Consensus size: 160
1 AAGAAAAGT
* * * *
10 CCATTTATAGTCACCCATGCTTTCAAAAGCCTTATTACTCACTTTCAATATTTTTATAATCTCAT
1 CCATTTATAGTCACCCACGCCTTCAAAAGCCTTATTACTCACGTTCAATATTTTTATAATCTCAC
* * * * *
75 AATTGATTCGAAATTAAATTTTTTTACGTGTTTCATTAAAACTGATGATTATTGAATGTCTGCCT
66 AATGGATTCGAAATTAAATTTTTTTACATGTTTCATTAAAACTAATAATAATTGAATGTCTGCCT
140 CAGGAAACA-TAAAGAAAAAGATATCCATTGG
131 -AGGAAA-AGTAAAGAAAAAGATATCCATTGG
* * *
171 NNNNNNNNNNCCATTTATAGTCACCCACGCCTTCAAAAGGCTTTTTACTCGCGTT-AATTATTTT
1 ----------CCATTTATAGTCACCCACGCCTTCAAAAGCCTTATTACTCACGTTCAA-TATTTT
* ** * * * * **
235 TATAATTTCACAATGGATTTTAATTTGAATTTTTTTATATTTTTGGTTAAAA-TAAATAATAATT
55 TATAATCTCACAATGGATTCGAAATTAAATTTTTTTACATGTTTCATTAAAACT-AATAATAATT
*
299 GAATGTGTGCCTAGGAAAATGTAAAGAAAAAGATATC
119 GAATGTCTGCCTAGGAAAA-GTAAAGAAAAAGATATC
336 TAGTGGCAAG
Statistics
Matches: 129, Mismatches: 22, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
169 1 0.01
170 9 0.07
171 119 0.92
ACGTcount: A:0.33, C:0.14, G:0.12, T:0.38
Consensus pattern (160 bp):
CCATTTATAGTCACCCACGCCTTCAAAAGCCTTATTACTCACGTTCAATATTTTTATAATCTCAC
AATGGATTCGAAATTAAATTTTTTTACATGTTTCATTAAAACTAATAATAATTGAATGTCTGCCT
AGGAAAAGTAAAGAAAAAGATATCCATTGG
Found at i:2328 original size:87 final size:87
Alignment explanation
Indices: 2182--2361 Score: 297
Period size: 87 Copynumber: 2.1 Consensus size: 87
2172 ATTAAATTTT
* *
2182 TTTATATTTTTTAGTAAAACATATTATAATTATATGTCTACCTCGAGAAAGATGAAGAAAAAGAT
1 TTTATATTTTTTAGTAAAACAGATTATAATTATATGTCTACCACGAGAAAGATGAAGAAAAAGAT
*
2247 ATCCATTGGTAAGAAAAGTCTA
66 ATCCATTGGCAAGAAAAGTCTA
* * *
2269 TTTATATTTTTTAGTAAAATAGGTTATAATTGTATGTCTACCACGAGAAAGATGAAGAAAAAGAT
1 TTTATATTTTTTAGTAAAACAGATTATAATTATATGTCTACCACGAGAAAGATGAAGAAAAAGAT
*
2334 ATCGATTGGCAAGAAAAGTCTA
66 ATCCATTGGCAAGAAAAGTCTA
2356 TTTATA
1 TTTATA
2362 GTCACCTATG
Statistics
Matches: 86, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
87 86 1.00
ACGTcount: A:0.42, C:0.08, G:0.16, T:0.34
Consensus pattern (87 bp):
TTTATATTTTTTAGTAAAACAGATTATAATTATATGTCTACCACGAGAAAGATGAAGAAAAAGAT
ATCCATTGGCAAGAAAAGTCTA
Found at i:2630 original size:171 final size:157
Alignment explanation
Indices: 2453--2765 Score: 309
Period size: 171 Copynumber: 1.9 Consensus size: 157
2443 ATATTTTTTA
* * * * *
2453 TTAAAACAGATTATAATTGAATGTCTAT-C-TTGGGAAATGTGAAGAAAAAGACTA-TCATTGGC
1 TTAAAACAGATAATAATTGAATGT-T-TGCTTTAGAAAACGGGAAGAAAAAGA-TATTCATTGGC
*
2515 AAGAAAAGT-TCATTTATAGTCACCCACACCTTTAAAA-GTATTTTTACT-AGCTTTAAATATTT
63 AAGAAAAGTCT-ATTTATAGTCACCCACACCTTCAAAAGGT-TTTTTACTCA-C-TT---TATTT
2577 TTATAATCTCATAATGNNNNNNNNNNTGAATTTTTTTACATTTGTGG
121 TTATAATCTCATAATG----------TGAATTTTTTTACATTTGTGG
2624 TTAAAACAGATAATAATTGAATGTTTGCTTTAGAAAACGGGAAGAAAAAGATATTCATTGGCAAG
1 TTAAAACAGATAATAATTGAATGTTTGCTTTAGAAAACGGGAAGAAAAAGATATTCATTGGCAAG
* * *
2689 GAAAGTCTATTTATTGTCACCCATACCTTCAAAAGGTTTTTTACTCACTTTATTTTTATAATCTC
66 AAAAGTCTATTTATAGTCACCCACACCTTCAAAAGGTTTTTTACTCACTTTATTTTTATAATCTC
2754 ATAAT-TG-ATTTT
131 ATAATGTGAATTTT
2766 AAGTCGAATT
Statistics
Matches: 127, Mismatches: 9, Indels: 28
0.77 0.05 0.17
Matches are distributed among these distances:
155 5 0.04
156 2 0.02
167 20 0.16
169 1 0.01
170 6 0.05
171 89 0.70
172 4 0.03
ACGTcount: A:0.35, C:0.12, G:0.13, T:0.37
Consensus pattern (157 bp):
TTAAAACAGATAATAATTGAATGTTTGCTTTAGAAAACGGGAAGAAAAAGATATTCATTGGCAAG
AAAAGTCTATTTATAGTCACCCACACCTTCAAAAGGTTTTTTACTCACTTTATTTTTATAATCTC
ATAATGTGAATTTTTTTACATTTGTGG
Found at i:3673 original size:87 final size:87
Alignment explanation
Indices: 3527--3702 Score: 289
Period size: 87 Copynumber: 2.0 Consensus size: 87
3517 AATTTTTTTG
* * *
3527 TATTTTTTAGTAAAACATATTATAATTATATGTCTACCTCGATAAAGATGAAGAAAAAGATATCC
1 TATTTTTTAGTAAAACAGATTACAATTATATGTCTACCTCGAGAAAGATGAAGAAAAAGATATCC
*
3592 ATTGGTAAGAAAAGTCTATTTA
66 ATTGGCAAGAAAAGTCTATTTA
* * *
3614 TATTTTTTATTAAAACAGATTACAATTGTATGTCTACCTCGAGAAAGATGAAGAAAAAGATATTC
1 TATTTTTTAGTAAAACAGATTACAATTATATGTCTACCTCGAGAAAGATGAAGAAAAAGATATCC
3679 ATTGGCAAGAAAAGTCTATTTA
66 ATTGGCAAGAAAAGTCTATTTA
3701 TA
1 TA
3703 GTCACGTATA
Statistics
Matches: 82, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
87 82 1.00
ACGTcount: A:0.42, C:0.10, G:0.14, T:0.35
Consensus pattern (87 bp):
TATTTTTTAGTAAAACAGATTACAATTATATGTCTACCTCGAGAAAGATGAAGAAAAAGATATCC
ATTGGCAAGAAAAGTCTATTTA
Found at i:4148 original size:171 final size:170
Alignment explanation
Indices: 3908--4280 Score: 457
Period size: 171 Copynumber: 2.2 Consensus size: 170
3898 NNNNNNNNNN
** * * * ** *
3908 AATATTTTTATAATCTCATAATGGATTTTATATTGAATTTTTTTACATTTATGGTTAAAACAGAT
1 AATATTTTTATAATCTCATAATTAATTTTA-ATCGAATTGTTTAACATTTATAATTAAAACAAAT
** * * *
3973 AATAATTGAATGT-TTTCTTCAGAAA-ATGAGAAGA-AAAAGATATTCATTGGCAAAGAAAGTCT
65 AATAATTGAATGTGTGCCTTCAGAAATAT--GAAGATAAAA-ATATCCAATGGCAAAAAAAGTCT
* * * *
4035 ATTTATTGTCACCCATACATTCAAAAGGCTTTTTACTCA-CTTTA
127 ATTCATAGTCACCCATACATTCAAAAGCCTTATTA-TCAGCTTTA
* *
4079 AATATTTTTATAATCTCATAATTAATTTTAAGTCGAATTGTTTAACATTTTTAATTAAAATAAAT
1 AATATTTTTATAATCTCATAATTAATTTTAA-TCGAATTGTTTAACATTTATAATTAAAACAAAT
*
4144 AATAATTGAATGTGTGCCTTGAGAAATATGAAGATAAAAATATCCAATGGCAAAAAAAGTCTATT
65 AATAATTGAATGTGTGCCTTCAGAAATATGAAGATAAAAATATCCAATGGCAAAAAAAGTCTATT
* * *
4209 CATAGTCACTCATACCTTCAAAAGCCTTATTATTAGCTTTA
130 CATAGTCACCCATACATTCAAAAGCCTTATTATCAGCTTTA
4250 AATATTTTTATAATCTCATAATTAATTTTAA
1 AATATTTTTATAATCTCATAATTAATTTTAA
4281 ATTAAATTTT
Statistics
Matches: 174, Mismatches: 23, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
170 3 0.02
171 156 0.90
172 13 0.07
173 2 0.01
ACGTcount: A:0.39, C:0.11, G:0.10, T:0.40
Consensus pattern (170 bp):
AATATTTTTATAATCTCATAATTAATTTTAATCGAATTGTTTAACATTTATAATTAAAACAAATA
ATAATTGAATGTGTGCCTTCAGAAATATGAAGATAAAAATATCCAATGGCAAAAAAAGTCTATTC
ATAGTCACCCATACATTCAAAAGCCTTATTATCAGCTTTA
Found at i:6298 original size:171 final size:171
Alignment explanation
Indices: 5935--6299 Score: 364
Period size: 171 Copynumber: 2.1 Consensus size: 171
5925 NNNNNNNNNN
* *
5935 AAAATCAATTATGAGATTATAAAAATATTTAAAGTGAGTAAAAAGCCTTTTGAACGTATGGGTGA
1 AAAATCAAATATGAGATTATAAAAATATTTAAAGTGAGTAAAAAGCCTTTTAAACGTATGGGTGA
* **
6000 CAATAAATAAACTTTCCTTGCCAATGAATATCTTTTTCTTCTTGTTTCCTGAAGCAAACATTCAA
66 CAATAAATAAACTTTCCTTGCCAATGAATATCGTTTTCTTCACGTTTCCTGAAGCAAACATTCAA
* * *
6065 TTATTATCTGTTTTAACCAAAAATGTAAAAAAATTAAACTT
131 TTATAATCTATTTTAACCAAAAATATAAAAAAATTAAACTT
************ * *
6106 AAANNNNNNNNNNNNATTATAAAAATATTTAAAGCT-AGTAAAAATG-CTTTTAAAGGTGTGGGT
1 AAAATCAAATATGAGATTATAAAAATATTTAAAG-TGAGTAAAAA-GCCTTTTAAACGTATGGGT
* ** * *
6169 GACTATAAATGGACTTTTCTTGTCAATG-ATAATCGTTTTCTTCACGTTT-CTCG-AG-ATAGAC
64 GACAATAAATAAACTTTCCTTGCCAATGAAT-ATCGTTTTCTTCACGTTTCCT-GAAGCA-A-AC
* * *
6230 ATTCAATTATAATCTATTTTAATCAAAAGTATAAAAAAATTTAACTT
125 ATTCAATTATAATCTATTTTAACCAAAAATATAAAAAAATTAAACTT
6277 AAAATCAAATATGAGATTATAAA
1 AAAATCAAATATGAGATTATAAA
6300 GCCATTTANN
Statistics
Matches: 147, Mismatches: 41, Indels: 12
0.74 0.20 0.06
Matches are distributed among these distances:
169 1 0.01
170 7 0.05
171 137 0.93
172 2 0.01
ACGTcount: A:0.40, C:0.11, G:0.11, T:0.35
Consensus pattern (171 bp):
AAAATCAAATATGAGATTATAAAAATATTTAAAGTGAGTAAAAAGCCTTTTAAACGTATGGGTGA
CAATAAATAAACTTTCCTTGCCAATGAATATCGTTTTCTTCACGTTTCCTGAAGCAAACATTCAA
TTATAATCTATTTTAACCAAAAATATAAAAAAATTAAACTT
Found at i:6802 original size:171 final size:171
Alignment explanation
Indices: 6623--6941 Score: 417
Period size: 171 Copynumber: 1.9 Consensus size: 171
6613 TTTTCAGAGT
* * *
6623 TAGACATTCAATTATTATTTATTTCAACTAAAAAAGA-AAAAAAATTCAACTTGAAATC-ATTTA
1 TAGACATTCAATTATAATCTATTTCAA-TAAAAAAGATAAAAAAATTCAACTTAAAATCAATTT-
* * * ** *
6686 TGAGATTATAAAAACATTTAAAATAAGTAATAAGGCTTTCGAAGGCAAGGTTGACTATAGATAGA
64 TAAGATTATAAAAACATTTAAAACAAGTAATAAGGCTTTCAAAGGCAAGGGAGACTATAAATAGA
6751 CTTGTCTTACCAATGGATATATTGGTTTTCCCGTTTCTTAAGG
129 CTTGTCTTACCAATGGATATATTGGTTTTCCCGTTTCTTAAGG
* * * * * *
6794 TAGACATTCAATTATAATCTGTTTTAATAGAAAATATAAAATAATTTAACTTAAAATCAATTTTA
1 TAGACATTCAATTATAATCTATTTCAATAAAAAAGATAAAAAAATTCAACTTAAAATCAATTTTA
* * * *
6859 AGATTATAAAAACATTTAAAACGAGTAATAAGGCTTTTAAAGGCATGGGAGACTATAAATGGACT
66 AGATTATAAAAACATTTAAAACAAGTAATAAGGCTTTCAAAGGCAAGGGAGACTATAAATAGACT
* *
6924 TTTCTTGCCAATGGATAT
131 TGTCTTACCAATGGATAT
6942 CTTTTTCTTN
Statistics
Matches: 125, Mismatches: 21, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
170 7 0.06
171 114 0.91
172 4 0.03
ACGTcount: A:0.41, C:0.11, G:0.13, T:0.34
Consensus pattern (171 bp):
TAGACATTCAATTATAATCTATTTCAATAAAAAAGATAAAAAAATTCAACTTAAAATCAATTTTA
AGATTATAAAAACATTTAAAACAAGTAATAAGGCTTTCAAAGGCAAGGGAGACTATAAATAGACT
TGTCTTACCAATGGATATATTGGTTTTCCCGTTTCTTAAGG
Found at i:7724 original size:170 final size:171
Alignment explanation
Indices: 7436--8326 Score: 901
Period size: 170 Copynumber: 5.2 Consensus size: 171
7426 NNNNNNNNNN
* * * *
7436 TTCAATTATAGTCTGTTTTAATAAAAAATATAAAAAAAATT-AACTTAAAATCAAATGTGAGATT
1 TTCAATTATAATCTGTTTTAATAAAAAATAT-AAAAAAATTCAATTTAAAATCAATTATGAGATT
** ** * **
7500 ATAAAGCCATTTAAAGCAAGTAATAAGGCTTTTGAAGGTATGGGTAACTATAAATGGA-TATTTC
65 ATAAAAACATTTAAAGTGAGTAATAAGGCTTTTGAAGGCATGGGGGACTATAAATGGACT-TTTC
* *
7564 TTACCAATGGATATCTTTTT-TTCATGTTTCTCGAGATAGACA
129 TTGCCAATGGATATCTTTTTCTTCACGTTTCTCGAGATAGACA
* * *
7606 TAT-AATTATAATCTGTTTTTATAAAAAATATAAAAAAATTTAATTTAAAATCAATTATAAGATT
1 T-TCAATTATAATCTGTTTTAATAAAAAATATAAAAAAATTCAATTTAAAATCAATTATGAGATT
*** * * * *
7670 ATAAAATTTTTTAAAGTGAGTAATACGGTTTTTGAAGGCATGGGGGAATATAAATAGACTTTTCT
65 ATAAAAACATTTAAAGTGAGTAATAAGGCTTTTGAAGGCATGGGGGACTATAAATGGACTTTTCT
** * * ** *
7735 TTTCAATGGAT-TTTTTTTCTTCACGTTTTTTAAGTTAGACA
130 TGCCAATGGATATCTTTTTCTTCACGTTTCTCGAGATAGACA
* * * *
7776 TTCAATTATTATTTATTTTAACT-AAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATT
1 TTCAATTATAATCTGTTTTAA-TAAAAAATATAAAAAAATTCAATTTAAAATCAATTATGAGATT
* * * * * * *
7840 ATAAAATCATTTAACA-TGCGTAATAAAGCTTTCGAAGGTATGGGTGACTATAGATGGACTTTTC
65 ATAAAAACATTTAA-AGTGAGTAATAAGGCTTTTGAAGGCATGGGGGACTATAAATGGACTTTTC
* * *
7904 TTGCCAATGGATATCTTTTTCTTCCCG-TTCTTGAGGTAGACA
129 TTGCCAATGGATATCTTTTTCTTCACGTTTCTCGAGATAGACA
* * * * * *
7946 TTCAATTATAATTTATTTTAACAAAAAATATAAAAAAATTCAATTTAGAATCAATTCTAAGATTA
1 TTCAATTATAATCTGTTTTAATAAAAAATATAAAAAAATTCAATTTAAAATCAATTATGAGATTA
* * * *
8011 TAAAAACATTTAAAGCGAGTAATAAGGCTTTTAAAGGCATGGGAGACTATAAATAGACTTTTCTT
66 TAAAAACATTTAAAGTGAGTAATAAGGCTTTTGAAGGCATGGGGGACTATAAATGGACTTTTCTT
* * **
8076 GCCAATGGATATCTTTCTCTTCATGTTTC-CTGAGGCAGACA
131 GCCAATGGATATCTTTTTCTTCACGTTTCTC-GAGATAGACA
* * * * * * *
8117 TTCAATAATGATCAGTTTTAATGAAACACATAAAAAAATTCAATTTAAAATCAATTATGAGAATA
1 TTCAATTATAATCTGTTTTAATAAAAAATATAAAAAAATTCAATTTAAAATCAATTATGAGATTA
* * * * * *
8182 TAAAAATATTTAAAATGAGTAATAAGGCTTTTGAAGG-AGTTGGTGACGATAAATGAACTTTTCT
66 TAAAAACATTTAAAGTGAGTAATAAGGCTTTTGAAGGCA-TGGGGGACTATAAATGGACTTTTCT
* * *
8246 TGCCACTAGATATCTTTTTCTGCACGTTT-TCTGAGACT-GACA
130 TGCCAATGGATATCTTTTTCTTCACGTTTCTC-GAGA-TAGACA
* * *
8288 -TCTAATTATTAT-TTTTTTAATAAAAAATGTAAAAAAATT
1 TTC-AATTATAATCTGTTTTAATAAAAAATATAAAAAAATT
8327 TGACTTAAAN
Statistics
Matches: 594, Mismatches: 111, Indels: 32
0.81 0.15 0.04
Matches are distributed among these distances:
169 17 0.03
170 404 0.68
171 173 0.29
ACGTcount: A:0.39, C:0.10, G:0.13, T:0.37
Consensus pattern (171 bp):
TTCAATTATAATCTGTTTTAATAAAAAATATAAAAAAATTCAATTTAAAATCAATTATGAGATTA
TAAAAACATTTAAAGTGAGTAATAAGGCTTTTGAAGGCATGGGGGACTATAAATGGACTTTTCTT
GCCAATGGATATCTTTTTCTTCACGTTTCTCGAGATAGACA
Found at i:8064 original size:340 final size:339
Alignment explanation
Indices: 7450--8326 Score: 1015
Period size: 340 Copynumber: 2.6 Consensus size: 339
7440 ATTATAGTCT
* * **
7450 GTTTTAATAAAAAATATAAAAAAAATT-AACTTAAAATCAAATGTGAGATTATAAAGCCATTTAA
1 GTTTTAATAAAAAATAT-AAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAATCATTTAA
* *
7514 A-GCAAGTAATAAGGCTTTTGAAGGTATGGGTAACTATAAATGGA-TATTTCTTACCAATGGATA
65 ATGC--GTAATAAGGCTTTTGAAGGTATGGGTGACTATAAATGGACT-TTTCTTGCCAATGGATA
* *
7577 TCTTTTT-TTCATGTTTCTCGAGATAGACATAT-AATTATAATCTGTTTTT-ATAAAAAATATAA
127 TCTTTTTCTTCACG-TTCTTGAGATAGACAT-TCAATTATAAT-T-TTTTTAATAAAAAATATAA
* *** * * * *
7639 AAAAATTTAATTTAAAATCAATTATAAGATTATAAAATTTTTTAAAGTGAGTAATACGGTTTTTG
188 AAAAATTCAATTTAAAATCAATTATAAGATTATAAAAACATTTAAAGCGAGTAATAAGGCTTTTA
* ** * * **
7704 AAGGCATGGGGGAATATAAATAGACTTTTCTTTTCAATGGAT-TTTTTTTCTTCACGTTTTTTAA
253 AAGGCATGGGAGAATATAAATAGACTTTTCTTGCCAATGGATATCTTTCTCTTCACGTTTCCTAA
** * * *
7768 GTTAGACATTCAATTATTATTTA
318 GGCAGACATTCAATAATGA-TCA
7791 -TTTTAACT-AAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAATCATTTAA
1 GTTTTAA-TAAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAATCATTTAA
* * *
7854 CATGCGTAATAAAGCTTTCGAAGGTATGGGTGACTATAGATGGACTTTTCTTGCCAATGGATATC
65 -ATGCGTAATAAGGCTTTTGAAGGTATGGGTGACTATAAATGGACTTTTCTTGCCAATGGATATC
* * *
7919 TTTTTCTTCCCGTTCTTGAGGTAGACATTCAATTATAATTTATTTTAACAAAAAATATAAAAAAA
129 TTTTTCTTCACGTTCTTGAGATAGACATTCAATTATAATTT-TTTTAATAAAAAATATAAAAAAA
* *
7984 TTCAATTTAGAATCAATTCTAAGATTATAAAAACATTTAAAGCGAGTAATAAGGCTTTTAAAGGC
193 TTCAATTTAAAATCAATTATAAGATTATAAAAACATTTAAAGCGAGTAATAAGGCTTTTAAAGGC
* * *
8049 ATGGGAGACTATAAATAGACTTTTCTTGCCAATGGATATCTTTCTCTTCATGTTTCCTGAGGCAG
258 ATGGGAGAATATAAATAGACTTTTCTTGCCAATGGATATCTTTCTCTTCACGTTTCCTAAGGCAG
8114 ACATTCAATAATGATCA
323 ACATTCAATAATGATCA
* * * * *
8131 GTTTTAATGAAACACATAAAAAAATTCAATTTAAAATCAATTATGAGAATATAAAAAT-ATTTAA
1 GTTTTAATAAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTAT-AAAATCATTT-A
* * * * * *
8195 AATGAGTAATAAGGCTTTTGAAGG-AGTTGGTGACGATAAATGAACTTTTCTTGCCACTAGATAT
64 AATGCGTAATAAGGCTTTTGAAGGTA-TGGGTGACTATAAATGGACTTTTCTTGCCAATGGATAT
* * * *
8259 CTTTTTCTGCACGTTTTCTGAGACT-GACA-TCTAATTATTATTTTTTTAATAAAAAATGTAAAA
128 CTTTTTCTTCACGTTCT-TGAGA-TAGACATTC-AATTATAATTTTTTTAATAAAAAATATAAAA
8322 AAATT
190 AAATT
8327 TGACTTAAAN
Statistics
Matches: 459, Mismatches: 59, Indels: 36
0.83 0.11 0.06
Matches are distributed among these distances:
338 1 0.00
339 15 0.03
340 237 0.52
341 178 0.39
342 27 0.06
343 1 0.00
ACGTcount: A:0.39, C:0.10, G:0.13, T:0.37
Consensus pattern (339 bp):
GTTTTAATAAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAATCATTTAAA
TGCGTAATAAGGCTTTTGAAGGTATGGGTGACTATAAATGGACTTTTCTTGCCAATGGATATCTT
TTTCTTCACGTTCTTGAGATAGACATTCAATTATAATTTTTTTAATAAAAAATATAAAAAAATTC
AATTTAAAATCAATTATAAGATTATAAAAACATTTAAAGCGAGTAATAAGGCTTTTAAAGGCATG
GGAGAATATAAATAGACTTTTCTTGCCAATGGATATCTTTCTCTTCACGTTTCCTAAGGCAGACA
TTCAATAATGATCA
Done.