Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018399593.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2847.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 6716
ACGTcount: A:0.32, C:0.11, G:0.11, T:0.31
Warning! 1035 characters in sequence are not A, C, G, or T
Found at i:924 original size:171 final size:170
Alignment explanation
Indices: 533--926 Score: 429
Period size: 171 Copynumber: 2.3 Consensus size: 170
523 NNNNNNNNNT
* * * * * *
533 GTGAATATAAATAGACTTTTTTGTCAATTAATACCTTTTTCTTTATGTTTCTCGAGGTAGACATT
1 GTGACTATAAATAGACTTTTTTGCCAATGAATACTTTTTTCTTCATGTTTCTCGAGGAAGACATT
* * ** * *
598 TAATTATAGTCTGTATTAACTAAAAATATAAAAACATTCAACTTAAAATCAATTATGAGATTATA
66 CAATTATAGCCTGTATTAAAGAAAAATACAAAAACATTCAACTTAAAATCAATCATGAGATTATA
**********
663 NNNNNNNNNNAAGCGAGTAATAAGGCTTTTAAAGGAATGA
131 AAAAAATTTAAAGCGAGTAATAAGGCTTTTAAAGGAATGA
* * * * *
703 GTGACTCTAAATAGACTTTTTTTCTCAATGAATGGCTTATTT-TACATGTTTCTCGAGGCAAG-C
1 GTGACTATAAATAGACTTTTTTGC-CAATGAAT-ACTTTTTTCTTCATGTTTCTCGAGG-AAGAC
* *
766 ATTCAATTATAGCCTGTTTTAAAGAAAAATACAAACAA-ATTCAACTTAAAATCAATCATGAGTT
63 ATTCAATTATAGCCTGTATTAAAGAAAAATACAAA-AACATTCAACTTAAAATCAATCATGAGAT
830 TATAAAAAAATTTAAAGCGAGTAATAAGGCTTTTAAAGGAATGGA
127 TATAAAAAAATTTAAAGCGAGTAATAAGGCTTTTAAAGGAAT-GA
875 G-GACTATAAAT-GCACTTTTCTTGCCAATGAATACTTTTTTCTTCATGTTTCT
1 GTGACTATAAATAG-ACTTTT-TTGCCAATGAATACTTTTTTCTTCATGTTTCT
927 TAAGATAGAC
Statistics
Matches: 182, Mismatches: 34, Indels: 15
0.79 0.15 0.06
Matches are distributed among these distances:
170 27 0.15
171 140 0.77
172 15 0.08
ACGTcount: A:0.36, C:0.12, G:0.13, T:0.36
Consensus pattern (170 bp):
GTGACTATAAATAGACTTTTTTGCCAATGAATACTTTTTTCTTCATGTTTCTCGAGGAAGACATT
CAATTATAGCCTGTATTAAAGAAAAATACAAAAACATTCAACTTAAAATCAATCATGAGATTATA
AAAAAATTTAAAGCGAGTAATAAGGCTTTTAAAGGAATGA
Found at i:1388 original size:171 final size:170
Alignment explanation
Indices: 1087--2973 Score: 1542
Period size: 171 Copynumber: 11.2 Consensus size: 170
1077 NNNNNNNNTC
* *
1087 AACTTAAAATCAATTATGAGATTATAAAACAATTTGAAGCGAGTAATAAGGCCTTTGAAGGAATG
1 AACTTAAAATCAATTATGAGATTATAAAACAATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATG
* * ** * * * * *
1152 GGTGACTATAAATAGATTTTTTTTATTAATGAATGCCATTTTCTTTACGTGTCTCGAGATAGACA
66 GGTGACTATAAATAGACTTTTCTTACCAATGAATG-CTTTTTCTTCACGTTTCTCAAGGTAGACA
* * ********
1217 TTTAATTATAGTCTGTTTTAATGAAAAATGTAANNNNNNNN
130 TTCAATTATAGTCTGTTTTAATGAAAAATATAAAAAAATTT
** * ** * * * *
1258 NNCTTAAAATTAATTATGAGATTATAAAACTCTTTAAAGCGAGGAACAAGGTTTTTAAAGGAATG
1 AACTTAAAATCAATTATGAGATTATAAAACAATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATG
* * * *
1323 GGTGACTATAAATTGAATTTTCTTATCAATGAATGCTTTGTTCTTCATGTTTCTCAAGGTAGACA
66 GGTGACTATAAATAGACTTTTCTTACCAATGAATGCTTT-TTCTTCACGTTTCTCAAGGTAGACA
* *
1388 TTCAATTATAGTCAGTTTTAATAAAAAATATAAAAAAATTT
130 TTCAATTATAGTCTGTTTTAATGAAAAATATAAAAAAATTT
********** * * * *
1429 AACTTAANNNNNNNNNNGAGATTATAAAACCATTTAAAGAGAGTAATAAGGCTTTTAAAGGAATT
1 AACTTAAAATCAATTATGAGATTATAAAACAATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATG
* * * ** * *
1494 GGTGACTATAAATGGACTTTGCTTGCCAATGAATGTCTTTTTCTTCACGTGCCTCGAGGTTGACA
66 GGTGACTATAAATAGACTTTTCTTACCAATGAATG-CTTTTTCTTCACGTTTCTCAAGGTAGACA
* *
1559 TTCAATTATAGTCTGTTTTAACT-AAAAATTTATAAAAATTT
130 TTCAATTATAGTCTGTTTTAA-TGAAAAATATAAAAAAATTT
* * * * *
1600 AACTGAAAATCAATTATCAGATTATAAAACAATTTAAAGCGACTAAGAAGGCTTTTGAAGGAATT
1 AACTTAAAATCAATTATGAGATTATAAAACAATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATG
* * * *
1665 GGTGACTATAAAGAGACTTTTCTTACCAACGAATGCTTTTTTCTTCATGTTTCTCTAA-GTAAAC
66 GGTGACTATAAATAGACTTTTCTTACCAATGAATGC-TTTTTCTTCACGTTTCTC-AAGGTAGAC
* * * * *
1729 ATTGAATTATATTATGTTTTAATCAAAAATATAAAAAAATTC
129 ATTCAATTATAGTCTGTTTTAATGAAAAATATAAAAAAATTT
* * *
1771 AACTTAAAATCAATTATGAGATTGTAAAATAATTTAATGCGAGTAATAAGGCTTTTGAAGGAATG
1 AACTTAAAATCAATTATGAGATTATAAAACAATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATG
* * * * * *
1836 TGTGACTAT-AATGGACTTTTCTTGCCAACGAATG-TGTTGTTCTTCACATTTCTCTAA-GTAAA
66 GGTGACTATAAATAGACTTTTCTTACCAATGAATGCT-TT-TTCTTCACGTTTCTC-AAGGTAGA
* * * * *
1898 CATTGAATTATAGTCTGTTTTAATGAAGAATGT-TAAAAATTA
128 CATTCAATTATAGTCTGTTTTAATGAAAAATATAAAAAAATTT
* * ** *
1940 AACTTAAAATCAATTATAAGATTATAAAACAATTGAAAGCCTGTAATAAGGCTTTTGAAGGAATA
1 AACTTAAAATCAATTATGAGATTATAAAACAATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATG
* *
2005 GGTGGA-TCTAAATAGACTTTTCTT-CTCAATGAATGGCTTTTTCTAT-ACGTTTCCTTCAA--C
66 GGT-GACTATAAATAGACTTTTCTTAC-CAATGAAT-GCTTTTTCT-TCACGTTT-C-TCAAGGT
* * * ** * * *
2065 AGGCAATCAATTATTGTCTGTTTTAACCAAAAATGTAAAAATATTC
125 AGACATTCAATTATAGTCTGTTTTAATGAAAAATATAAAAAAATTT
** * * * *
2111 AACTTAAAATCAATTATGAGATTATAAAACAATCAAAAGTGACTAATAAAGTTTTTGAAGGAATG
1 AACTTAAAATCAATTATGAGATTATAAAACAATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATG
* * * * * * * * ** *
2176 GGTCACTACAAA-AGGACTTTTCTTGCCAACGAATACGTTTTTCTTTACATTTCTCTAGCCAAAC
66 GGTGACTATAAATA-GACTTTTCTTACCAATGAATGC-TTTTTCTTCACGTTTCTCAAGGTAGAC
* * * * ** * *
2240 ATTGAATTATAGCCTATTTTGACCAGAAATGTAAAAAAATTT
129 ATTCAATTATAGTCTGTTTTAATGAAAAATATAAAAAAATTT
* ** *** * *
2282 AACTTAAAATCGATTATGAGATTATAAAATTATTTAAAATAAGCAATAAGGCTTTTGAAGAAATG
1 AACTTAAAATCAATTATGAGATTATAAAACAATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATG
* * * * * *
2347 GGTGACTATAAAT-GAACTTTTCTTGCCAACGAATACATTTTTCTTCACATTTTTCTAA-GTGGA
66 GGTGACTATAAATAG-ACTTTTCTTACCAATGAATGC-TTTTTCTTCACGTTTCTC-AAGGTAGA
* ** ** * * *
2410 CATTGAATTATAGTCTGTTTCCACCAAAAATGTAAAAAAACTC
128 CATTCAATTATAGTCTGTTTTAATGAAAAATATAAAAAAATTT
*
2453 AACTTAAAATCAACTATGAGATTATAAAACAATTTAAAGC--G-----A--C---T-----AATG
1 AACTTAAAATCAATTATGAGATTATAAAACAATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATG
* * * *
2501 GGTGAATATAAAT-GAACTTCTCTTGCCAATGAATGCCTTTTTCTTCATGTTTCTCAAGGTAGAC
66 GGTGACTATAAATAG-ACTTTTCTTACCAATGAATG-CTTTTTCTTCACGTTTCTCAAGGTAGAC
* ** * * *
2565 ATTCAATTATAGTCTGTATTAACCAAAAATGTAAAAACATTA
129 ATTCAATTATAGTCTGTTTTAATGAAAAATATAAAAAAATTT
* *
2607 AACTTAAAATCAATTATGTGATTATAAAATAATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATG
1 AACTTAAAATCAATTATGAGATTATAAAACAATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATG
* * ** * * * **
2672 AGTGACTCTAAATAGACTTTT-TATGGCAATGAATGGCTTTTT-TACATGTTTCTCGAGACA-AG
66 GGTGACTATAAATAGACTTTTCT-TACCAATGAAT-GCTTTTTCTTCACGTTTCTCAAGGTAGA-
* * * * * * *
2734 CATTAAATTATAGCCTGTTTTAGTAAAAAATGTAAACAAATTC
128 CATTCAATTATAGTCTGTTTTAATGAAAAATATAAAAAAATTT
* * * *
2777 AACTTAAAATCAATCATGAG-TTTTAAAAAAAATTTGAAGCGAGTAATAAGGCTTTTGAAGGAAT
1 AACTTAAAATCAATTATGAGATTAT-AAAACAATTTAAAGCGAGTAATAAGGCTTTTGAAGGAAT
* * * * * *
2841 GGGTGACTATAAATAGATTTTTTTTATCAATGAATGCCATTTTCTTTATGTTTCTCAAGGTAGAC
65 GGGTGACTATAAATAGACTTTTCTTACCAATGAATG-CTTTTTCTTCACGTTTCTCAAGGTAGAC
* * * *
2906 ATTCAAATGTAGTATGTTTTAATGAAAAATGTAAAAAAATTT
129 ATTCAATTATAGTCTGTTTTAATGAAAAATATAAAAAAATTT
*
2948 AACTTAAAATTAATTATGAGATTATA
1 AACTTAAAATCAATTATGAGATTATA
2974 NNNNNNNNNN
Statistics
Matches: 1388, Mismatches: 272, Indels: 112
0.78 0.15 0.06
Matches are distributed among these distances:
153 2 0.00
154 127 0.09
155 1 0.00
156 1 0.00
159 1 0.00
161 1 0.00
162 1 0.00
163 1 0.00
164 1 0.00
166 1 0.00
168 1 0.00
169 80 0.06
170 278 0.20
171 875 0.63
172 17 0.01
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.35
Consensus pattern (170 bp):
AACTTAAAATCAATTATGAGATTATAAAACAATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATG
GGTGACTATAAATAGACTTTTCTTACCAATGAATGCTTTTTCTTCACGTTTCTCAAGGTAGACAT
TCAATTATAGTCTGTTTTAATGAAAAATATAAAAAAATTT
Found at i:2630 original size:154 final size:153
Alignment explanation
Indices: 2343--2653 Score: 428
Period size: 154 Copynumber: 2.0 Consensus size: 153
2333 CTTTTGAAGA
* * * *
2343 AATGGGTGACTATAAATGAACTTTTCTTGCCAACGAATACATTTTTCTTCACATTTTTCTAAGTG
1 AATGGGTGAATATAAATGAACTTCTCTTGCCAACGAATACATTTTTCTT-ACATGTTTCTAAGTA
* * *
2408 GACATTGAATTATAGTCTGTTTCCACCAAAAATGTAAAAAAACTCAACTTAAAATCAACTATGAG
65 GACATTCAATTATAGTCTGTTTCAACCAAAAATGTAAAAAAACTAAACTTAAAATCAACTATGAG
2473 ATTATAAAACAATTTAAAGCGACT
130 ATTATAAAACAATTTAAAGCGACT
* * *
2497 AATGGGTGAATATAAATGAACTTCTCTTGCCAATGAATGCCTTTTTCTT-CATGTTTCTCAAGGT
1 AATGGGTGAATATAAATGAACTTCTCTTGCCAACGAATACATTTTTCTTACATGTTTCT-AA-GT
* * *
2561 AGACATTCAATTATAGTCTGTATT-AACCAAAAATGTAAAAACATTAAACTTAAAATCAATTATG
64 AGACATTCAATTATAGTCTGT-TTCAACCAAAAATGTAAAAAAACTAAACTTAAAATCAACTATG
* * *
2625 TGATTATAAAATAATTTAAAGCGAGT
128 AGATTATAAAACAATTTAAAGCGACT
2651 AAT
1 AAT
2654 AAGGCTTTTG
Statistics
Matches: 138, Mismatches: 16, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
152 8 0.06
153 2 0.01
154 126 0.91
155 2 0.01
ACGTcount: A:0.39, C:0.14, G:0.12, T:0.34
Consensus pattern (153 bp):
AATGGGTGAATATAAATGAACTTCTCTTGCCAACGAATACATTTTTCTTACATGTTTCTAAGTAG
ACATTCAATTATAGTCTGTTTCAACCAAAAATGTAAAAAAACTAAACTTAAAATCAACTATGAGA
TTATAAAACAATTTAAAGCGACT
Found at i:2828 original size:170 final size:171
Alignment explanation
Indices: 2527--2973 Score: 481
Period size: 170 Copynumber: 2.6 Consensus size: 171
2517 CTTCTCTTGC
* ** * * *
2527 CAATGAATGCCTTTTTCTTCATGTTTCTCAAGGTAGACATTCAATTATAGTCTGTATTAACCAAA
1 CAATGAATGCCTTTTTCTACATGTTTCTCAAGCAAGACATTAAATTATAGCCTGTATTAACAAAA
* * *
2592 AATGTAAAAACATTAAACTTAAAATCAATTATGTGATTATAAAATAATTTAAAGCGAGTAATAAG
66 AATGTAAAAACATTAAACTTAAAATCAATCATGAGATTATAAAAAAATTTAAAGCGAGTAATAAG
*
2657 GCTTTTGAAGGAATGAGTGACTCTAAATAGACTTTTTATGG
131 GCTTTTGAAGGAATGAGTGACTATAAATAGACTTTTTATGG
* * * **
2698 CAATGAATGGCTTTTT-TACATGTTTCTCGAGACAAG-CATTAAATTATAGCCTGTTTTAGTAAA
1 CAATGAATGCCTTTTTCTACATGTTTCTCAAG-CAAGACATTAAATTATAGCCTGTATTAACAAA
* * *
2761 AAATGTAAACAA-ATTCAACTTAAAATCAATCATGAG-TTTTAAAAAAAATTTGAAGCGAGTAAT
65 AAATGTAAA-AACATTAAACTTAAAATCAATCATGAGATTAT-AAAAAAATTTAAAGCGAGTAAT
* * * **
2824 AAGGCTTTTGAAGGAATGGGTGACTATAAATAGATTTTTTTTAT
128 AAGGCTTTTGAAGGAATGAGTGACTATAAATAGACTTTTTATGG
* ** ** * ** * **
2868 CAATGAATGCCATTTTCTTTATGTTTCTCAAGGTAGACATTCAAA-TGTAGTATGTTTTAATGAA
1 CAATGAATGCCTTTTTCTACATGTTTCTCAAGCAAGACATT-AAATTATAGCCTGTATTAACAAA
* * * *
2932 AAATGTAAAAAAATTTAACTTAAAATTAATTATGAGATTATA
65 AAATGTAAAAACATTAAACTTAAAATCAATCATGAGATTATA
2974 NNNNNNNNNN
Statistics
Matches: 229, Mismatches: 39, Indels: 16
0.81 0.14 0.06
Matches are distributed among these distances:
169 3 0.01
170 140 0.61
171 80 0.35
172 6 0.03
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.36
Consensus pattern (171 bp):
CAATGAATGCCTTTTTCTACATGTTTCTCAAGCAAGACATTAAATTATAGCCTGTATTAACAAAA
AATGTAAAAACATTAAACTTAAAATCAATCATGAGATTATAAAAAAATTTAAAGCGAGTAATAAG
GCTTTTGAAGGAATGAGTGACTATAAATAGACTTTTTATGG
Found at i:3985 original size:171 final size:167
Alignment explanation
Indices: 3812--4983 Score: 557
Period size: 171 Copynumber: 6.9 Consensus size: 167
3802 NNNNNNCTCG
* * * * *
3812 CTTTAAATTGTTTTATAATCTCATAATTGATTTTAAGTTGAATGTTTTCAAATTTTTGGTTAATA
1 CTTTAAATTATTTTATAATCTCATAATTGATTTTAAGTT-AATTTTTTTACATTTTTGGTCAA-A
* * *
3877 CAGACTATAATTGAATGTCTACCTCGAGAAACGTGAAGAAAAAGGTATTCATTGACAAGAGAAGT
64 CAGACTATAATTCAATGTCTACCTAGAGAAACGTGAAGAAAAATGTATTCATTGACAAGA-AAGT
* * *
3942 TCATTTATAGTCACCCGTTCCTTCAATACCATTATTACTCG
128 TCATTTATAGTCACCCATTCCTTCAAAACC-TTATTACTCA
* * *
3983 CTTTAAATTATTTTATAATCTCATAGTTGATTTTAAGTTTAGTTTTTTTACATTTTTGGTGGAAA
1 CTTTAAATTATTTTATAATCTCATAATTGATTTTAAG-TTAATTTTTTTACATTTTTGGT-CAAA
* * *********
4048 CAGACTAAAATTCAATGTCTACTTAGAGAAACGTGAAGAAAAATGTATTCNNNNNNNNNNAAAGT
64 CAGACTATAATTCAATGTCTACCTAGAGAAACGTGAAGAAAAATGTATTC-ATTGACAAGAAAGT
* * * *
4113 TCATTTATAGTCACCCATTTCTTTAAAAGCCTTATTTCTAA
128 TCATTTATAGTCACCCATTCCTTCAAAA-CCTTATTACTCA
* * *
4154 TTTTAAATAATTTTATAATCTCATAATCGATTTTAAGTTAAGTTTTTTTACATTTTTGGTCAAAA
1 CTTTAAATTATTTTATAATCTCATAATTGATTTTAAGTTAA-TTTTTTTACATTTTTGGTC-AAA
* * ** * * * *
4219 TAGGCTATAATTCAATGTCTGGCTAGAGAAACATGAAGAAAAATATATTCGTTGGCAAGAAAAG-
64 CAGACTATAATTCAATGTCTACCTAGAGAAACGTGAAGAAAAATGTATTCATTGACAAG-AAAGT
* ** *
4283 TCGTTTTATAGTGGCCCATTCCTTCAAAAACCTTATTAGTCA
128 TC-ATTTATAGTCACCCATTCCTTC-AAAACCTTATTACTCA
* * ********* *
4325 CTTT-AGTTGTTTTATAATCTCATAATTGATTTNNNNNNNNNNTTTTTTACATTTTTGGTTAAAA
1 CTTTAAATTATTTTATAATCTCATAATTGATTT-TAAGTTAATTTTTTTACATTTTTGG-TCAAA
* * ** *** * * * *
4389 CAGACAATAATTGAATACCGGTCTA-AGGAGACGTGTAGAAAAA-GCCATTCATTGAGAAGAAAA
64 CAGACTATAATTCAATGTCTACCTAGA-GAAACGTGAAGAAAAATG-TATTCATTGACAAG-AAA
* * * ***
4452 G-TCTATTTAGATTCACCCATTCCTCCAAAAGCCTTATTACAGG
126 GTTC-ATTTATAGTCACCCATTCCTTCAAAA-CCTTATTACTCA
* ********** ** * *
4495 CTTTCAATTNNNNNNNNNNCTCATAATTGATTTTAAGTTGAATTTTTTTGTATTCTTCT-TTAAA
1 CTTTAAATTATTTTATAATCTCATAATTGATTTTAAGTT-AATTTTTTTACATT-TT-TGGTCAA
* * * * * * *** ** *
4559 ACAGATTATAATTGAATGTTTACTTAGAGAAATGTGAAGAACAACACATTTGTTGGCAAGAAAAG
63 ACAGACTATAATTCAATGTCTACCTAGAGAAACGTGAAGAAAAATGTATTCATTGACAAG-AAAG
4624 -TC-TATTATAGTCACCCATTCCTTCAAAAGCCTTATTACTCA
127 TTCAT-TTATAGTCACCCATTCCTTCAAAA-CCTTATTACTCA
*********************** * * *
4665 NNNNNNNNNNNNNNNNNNNNNNNTAATTGATTTTAAGTTGAATTTTTTTATATTTTTGATTAAAA
1 CTTTAAATTATTTTATAATCTCATAATTGATTTTAAGTT-AATTTTTTTACATTTTTG-GTCAAA
* * * * * * **
4730 TAGAATATAATTTAATGTCTACTTAGAGAAACATGAAGAAAAAAGTATTTGTTGACAAGAAAAGT
64 CAGACTATAATTCAATGTCTACCTAGAGAAACGTGAAGAAAAATGTATTCATTGACAAG-AAAGT
* * *
4795 CTC-TTTATAGTCACCGATTCCTTCAAAAACCTTCTTAGT-A
128 -TCATTTATAGTCACCCATTCCTTC-AAAACCTTATTACTCA
* * * * * ** *
4835 GCTTTAAATTGTTTTATAATCTGATAATTAATTTTAAGTTAAATTTTTATAAATTTTTCACTAAA
1 -CTTTAAATTATTTTATAATCTCATAATTGATTTTAAGTT-AATTTTTTTACATTTTT-GGTCAA
* * ** * * * * *
4900 ACAGACTATAATTGAATGTCAACCTCTAGAAACATGAAGAAAAAGGCATTCGTTGGCAAGAAAAG
63 ACAGACTATAATTCAATGTCTACCTAGAGAAACGTGAAGAAAAATGTATTCATTGACAAG-AAAG
4965 -TCTATTTATAGTCACCCAT
127 TTC-ATTTATAGTCACCCAT
4984 NNNNNNNNNN
Statistics
Matches: 754, Mismatches: 217, Indels: 60
0.73 0.21 0.06
Matches are distributed among these distances:
168 1 0.00
169 10 0.01
170 254 0.34
171 467 0.62
172 21 0.03
173 1 0.00
ACGTcount: A:0.34, C:0.13, G:0.12, T:0.37
Consensus pattern (167 bp):
CTTTAAATTATTTTATAATCTCATAATTGATTTTAAGTTAATTTTTTTACATTTTTGGTCAAACA
GACTATAATTCAATGTCTACCTAGAGAAACGTGAAGAAAAATGTATTCATTGACAAGAAAGTTCA
TTTATAGTCACCCATTCCTTCAAAACCTTATTACTCA
Done.