Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399597.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2850.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 788

Length: 1314
ACGTcount: A:0.29, C:0.08, G:0.10, T:0.28

Warning! 324 characters in sequence are not A, C, G, or T


Found at i:295 original size:171 final size:169

Alignment explanation


    Indices: 118--520  Score: 436
    Period size: 170  Copynumber: 2.4  Consensus size: 169

        108 NNNNNNNNNN

                                               * *                           
        118 AAAAATGTAAAACAATTCAACTTAAAATCAATTATGATATTATCAAACCATTTAAAGCAAGTAAT
          1 AAAAATGTAAAA-AATTCAACTTAAAATCAATTATTAGATTAT-AAACCATTTAAAGCAAGTAAT

               *        *                                             *      
        183 AAGGCTTTTGAATGAATGGGAGGCGATAAATGGACTTTTATTACCAATGAATACTTTTTTCTTCA
         64 AAGACTTTTGAAGGAATGGGAGGCGATAAATGGACTTTTATTACCAATGAATACTTTTGTCTTCA

                  *  *  *                     *          
        248 CATTTGTTAGGACA-A-A-CGTTCAATTATAT-TTTGTTTTAACA
        129 CATTT-CT-CGAAATAGACCG-TCAATTAT-TGTCTGTTTTAACA

                          *  *           *                 *         * *     
        289 AAAAATGTAAAGAATTTTAACTTAAAATCGATTATTAGATTATAAACTATTTAAAGCGACTAATA
          1 AAAAATGTAAA-AAATTCAACTTAAAATCAATTATTAGATTATAAACCATTTAAAGCAAGTAATA

                              **********          *                          
        354 AGACTTTTGAAGGAATGGNNNNNNNNNNATGGACTTTTCTTACCAATGAATACTTTTGTCTTCAC
         65 AGACTTTTGAAGGAATGGGAGGCGATAAATGGACTTTTATTACCAATGAATACTTTTGTCTTCAC

            *                                     * 
        419 GTTTCTCGAAATAGACCGTCAATTATTGTCTGTTTTAATA
        130 ATTTCTCGAAATAGACCGTCAATTATTGTCTGTTTTAACA

                  *             *                                         
        459 AAAAATATAAAAAATTCAACCTAAAATCAATTATTAGATTATAAAACCATTTAAAGCAAGTA
          1 AAAAATGTAAAAAATTCAACTTAAAATCAATTATTAGATTAT-AAACCATTTAAAGCAAGTA

        521 NNNNNNNNNN


Statistics
Matches: 190,  Mismatches: 36, Indels: 13
        0.79            0.15        0.05

Matches are distributed among these distances:
 168    3  0.02
 169   30  0.16
 170  118  0.62
 171   38  0.20
 172    1  0.01

ACGTcount: A:0.40, C:0.12, G:0.12, T:0.34


Consensus pattern (169 bp):   
AAAAATGTAAAAAATTCAACTTAAAATCAATTATTAGATTATAAACCATTTAAAGCAAGTAATAA
GACTTTTGAAGGAATGGGAGGCGATAAATGGACTTTTATTACCAATGAATACTTTTGTCTTCACA
TTTCTCGAAATAGACCGTCAATTATTGTCTGTTTTAACA
Done.