Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399601.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2855.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2085
ACGTcount: A:0.28, C:0.08, G:0.04, T:0.38

Warning! 457 characters in sequence are not A, C, G, or T


Found at i:252 original size:18 final size:18

Alignment explanation


    Indices: 220--257  Score: 51
    Period size: 19  Copynumber: 2.1  Consensus size: 18

        210 TAAATACTTA

                               
        220 TTTTTTATTAAAATTAGAC
          1 TTTTTTATTAAAATTA-AC

                      *       
        239 TTTTTTATT-TAATTAAC
          1 TTTTTTATTAAAATTAAC

              
        256 TT
          1 TT

        258 ATTACGTTAA


Statistics
Matches: 18,  Mismatches: 1, Indels: 2
        0.86            0.05        0.10

Matches are distributed among these distances:
  17    4  0.22
  18    5  0.28
  19    9  0.50

ACGTcount: A:0.32, C:0.05, G:0.03, T:0.61


Consensus pattern (18 bp):   
TTTTTTATTAAAATTAAC
Done.