Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399624.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2874.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1800
ACGTcount: A:0.17, C:0.09, G:0.11, T:0.35

Warning! 501 characters in sequence are not A, C, G, or T


Found at i:896 original size:17 final size:17

Alignment explanation


    Indices: 874--909  Score: 72
    Period size: 17  Copynumber: 2.1  Consensus size: 17

        864 TCGGTTTGGT

                             
        874 TTTGGGTTTTGTATACA
          1 TTTGGGTTTTGTATACA

                             
        891 TTTGGGTTTTGTATACA
          1 TTTGGGTTTTGTATACA

              
        908 TT
          1 TT

        910 GGAGACCATT


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   19  1.00

ACGTcount: A:0.17, C:0.06, G:0.22, T:0.56


Consensus pattern (17 bp):   
TTTGGGTTTTGTATACA
Done.