Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399626.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2876.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 984

Length: 1640
ACGTcount: A:0.17, C:0.07, G:0.07, T:0.18

Warning! 825 characters in sequence are not A, C, G, or T


Found at i:481 original size:168 final size:171

Alignment explanation


    Indices: 1--578  Score: 413
    Period size: 170  Copynumber: 3.4  Consensus size: 171

                          *            *                   *      *    **    
          1 ACATGAAGAAAAAGCCATTCATT-GACTAGAAAAGTCCATTTATAGTCACCCATGCCTTTGAAAG
          1 ACATGAAGAAAAAGTCATTCATTAG-CAAGAAAAGTCCATTTATAGTGACCCATTCCTTCAAAAG

                      **               *  * **********             *         
         65 CCTTAGTACTCACTTTAAATGGTTTTACAATCNNNNNNNNNNTTTTAAGTTGAATTGTTTT-ACA
         65 CCTTAGTACTTGCTTTAAATGGTTTTATAAACTCATAACTGATTTTAAGTTGAA-GGTTTTCACA

                 *          * *       * *   * * *  *    
        129 TTTTTGGTTGAAAA-ACATTATAATTGATTGTTTGCGTCAGGAA
        129 TTTTTAGTT-AAAACAGACTATAATTAAATGTCTACCTCTGGAA

                  *  **   *                      *        **                *
        172 ACATGATGAGCAAGCCATTCATT-GACAAGAAAAGTCTATTTATAGCCACCCATTCC-TCAAAAA
          1 ACATGAAGAAAAAGTCATTCATTAG-CAAGAAAAGTCCATTTATAGTGACCCATTCCTTCAAAAG

                 *    **           **********                                
        235 CCTTATTACTCACTTTAAATGGTNNNNNNNNNNCATAACTGATTTTAAGTTGAAGGTTTTCACAT
         65 CCTTAGTACTTGCTTTAAATGGTTTTATAAACTCATAACTGATTTTAAGTTGAAGGTTTTCACAT

                *          *        *       *         
        300 TTTTTGTTAAAACAGGCTATAATTGAATGTCTGCCT-TGGAA
        130 TTTTAGTTAAAACAGACTATAATTAAATGTCTACCTCTGGAA

                                 *   *            *          *               
        341 TACATGAAGAAAATAG-CATTTATTGGCAAGAAAAGTCTATTTA-A-TGGCCCATTCCTTCAAAA
          1 -ACATGAAGAAAA-AGTCATTCATTAGCAAGAAAAGTCCATTTATAGTGACCCATTCCTTCAAAA

                                                   *                 *    *  
        403 GCCTTAGTACTTGCTTTAAATGGTTTTATAAACTCATAATTGATTTTAAGTT--AGATTTTTTAC
         64 GCCTTAGTACTTGCTTTAAATGGTTTTATAAACTCATAACTGATTTTAAGTTGAAG-GTTTTCAC

                              *                *        
        466 ATTTTTAGTTAAAACAGATTATAATTAAATGTCTATCTCTGGAA
        128 ATTTTTAGTTAAAACAGACTATAATTAAATGTCTACCTCTGGAA

              *                                           *  *               
        510 ACGTGAAGAAAAAGTCATTCATTAGCAAGAAAAGTCCATTTATAGTTACTCATTCCTTCAAAAGC
          1 ACATGAAGAAAAAGTCATTCATTAGCAAGAAAAGTCCATTTATAGTGACCCATTCCTTCAAAAGC

                
        575 CTTA
         66 CTTA

        579 NNNNNNNNNN


Statistics
Matches: 321,  Mismatches: 75, Indels: 23
        0.77            0.18        0.05

Matches are distributed among these distances:
 167    4  0.01
 168   81  0.25
 169   63  0.20
 170  121  0.38
 171   52  0.16

ACGTcount: A:0.33, C:0.15, G:0.14, T:0.34


Consensus pattern (171 bp):   
ACATGAAGAAAAAGTCATTCATTAGCAAGAAAAGTCCATTTATAGTGACCCATTCCTTCAAAAGC
CTTAGTACTTGCTTTAAATGGTTTTATAAACTCATAACTGATTTTAAGTTGAAGGTTTTCACATT
TTTAGTTAAAACAGACTATAATTAAATGTCTACCTCTGGAA
Done.