Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399641.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2890.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2403
ACGTcount: A:0.18, C:0.06, G:0.05, T:0.18

Warning! 1283 characters in sequence are not A, C, G, or T


Found at i:1003 original size:171 final size:157

Alignment explanation


    Indices: 792--1114  Score: 321
    Period size: 171  Copynumber: 2.0  Consensus size: 157

        782 TGTAACAAAC

                                   *                     *          *     *  
        792 GTGAAGAAAAAAAAATTCATTGATAAGAAAAGTCCATTTATAGCCTCACATTCCTTTAATAGCCT
          1 GTGAAGAAAAAAAAATTCATTGACAAGAAAAGTCCATTTATAGCCACACATTCCTTCAATAGACT

                *                                                         *  
        857 T-TGTACTCGTTCTAAAT-GATTTCATAA-CCTAGTAATTAATTTTAAGTTCAATTTTTTTATAT
         66 TAT-CACTCGTTCTAAATGGATTTC-TAATCCTA-TAATTAATTTTAAGTTCAA-TTTTTTACAT

                                                         
        919 T-TTTCATTAAAACAGACTATAATTNNNNNNNNNNNNNGAGAAAA
        127 TATTT-ATTAAAACAGACTATAATT-------------GAGAAAA

                        *         *                    *   *                 
        963 GTGAAGAAAAAAGAATTCATTGGCAAGAAAAGTCCATTTATAGTCACTCATTCCTTCAATAGACT
          1 GTGAAGAAAAAAAAATTCATTGACAAGAAAAGTCCATTTATAGCCACACATTCCTTCAATAGACT

                       *       *         *       *          *                
       1028 TATCACTCGTTTTAAATGGTTTTCTAATCTTATAATTGATTTTAAGTTGAATTTTTTACATTATT
         66 TATCACTCGTTCTAAATGGATTTCTAATCCTATAATTAATTTTAAGTTCAATTTTTTACATTATT

                                  
       1093 TATTAAAACAGACTATAATTGA
        131 TATTAAAACAGACTATAATTGA

       1115 ATGTCTGCCT


Statistics
Matches: 133,  Mismatches: 15, Indels: 22
        0.78            0.09        0.13

Matches are distributed among these distances:
 157    2  0.02
 170   29  0.22
 171   93  0.70
 172    9  0.07

ACGTcount: A:0.36, C:0.12, G:0.11, T:0.37


Consensus pattern (157 bp):   
GTGAAGAAAAAAAAATTCATTGACAAGAAAAGTCCATTTATAGCCACACATTCCTTCAATAGACT
TATCACTCGTTCTAAATGGATTTCTAATCCTATAATTAATTTTAAGTTCAATTTTTTACATTATT
TATTAAAACAGACTATAATTGAGAAAA
Done.