Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399642.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2891.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2392
ACGTcount: A:0.15, C:0.08, G:0.07, T:0.16

Warning! 1302 characters in sequence are not A, C, G, or T


Found at i:2283 original size:24 final size:23

Alignment explanation


    Indices: 2243--2290  Score: 62
    Period size: 24  Copynumber: 2.0  Consensus size: 23

       2233 AGGATTTTTT

                                   
       2243 ATTTATTTTATTAGTTTAGTTTA
          1 ATTTATTTTATTAGTTTAGTTTA

                                *    
       2266 ATTTATGTTTA-TATGTTTATTTTA
          1 ATTTAT-TTTATTA-GTTTAGTTTA

             
       2290 A
          1 A

       2291 GTTAATAATG


Statistics
Matches: 22,  Mismatches: 1, Indels: 3
        0.85            0.04        0.12

Matches are distributed among these distances:
  23    8  0.36
  24   14  0.64

ACGTcount: A:0.27, C:0.00, G:0.08, T:0.65


Consensus pattern (23 bp):   
ATTTATTTTATTAGTTTAGTTTA
Done.