Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399650.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2899.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2920
ACGTcount: A:0.11, C:0.41, G:0.37, T:0.11


Found at i:39 original size:9 final size:9

Alignment explanation


    Indices: 25--57  Score: 66
    Period size: 9  Copynumber: 3.7  Consensus size: 9

         15 CGCGGCCTGT

                     
         25 CCACCGAGC
          1 CCACCGAGC

                     
         34 CCACCGAGC
          1 CCACCGAGC

                     
         43 CCACCGAGC
          1 CCACCGAGC

                  
         52 CCACCG
          1 CCACCG

         58 GTCCCGAGCG


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   24  1.00

ACGTcount: A:0.21, C:0.58, G:0.21, T:0.00


Consensus pattern (9 bp):   
CCACCGAGC
Done.