Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399661.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2908.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 946

Length: 1577
ACGTcount: A:0.22, C:0.08, G:0.07, T:0.23

Warning! 616 characters in sequence are not A, C, G, or T


Found at i:827 original size:169 final size:171

Alignment explanation


    Indices: 479--853  Score: 398
    Period size: 169  Copynumber: 2.2  Consensus size: 171

        469 NNNNNNNNNN

                    *                         *                         *    
        479 TTTTATAAACTCATAATTGATTTTAAGTTGAATTGTTTCACATTTTTCTTTAAAACAGACTATAA
          1 TTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTCACATTTTTCTTTAAAACAGACAATAA

                      **                      *                          *   
        544 TTAAAAGCCTGCCTTAGAAAAAGTGTAGAAAAAGTCATTCATTGAGAAGAAAAAATCATTTTTAG
         66 TTAAAAGCCTAACTTAGAAAAAGTGTAGAAAAAGCCATTCATTGAGAAGAAAAAATCATTTATAG

                      *          *        ** ********
        609 TCACCCATTCTTTCGAAAGCCTTATTACTCGGTNNNNNNNN
        131 TCACCCATTCCTTCGAAAGCCATATTACTCACTTTAAATAG

            **                        *           *               *          
        650 NNTTATAATCTCATAATTGATTTTAACTTGAATTTTTTTACA-TTTT-TTTAAAGCAGACAATAA
          1 TTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTCACATTTTTCTTTAAAACAGACAATAA

              *  * *             *                  *             **         
        713 TTTAATGTCTAACTTAAGAAACA-TGTAGAAAAAGCCATTGATTGAGAAGAAAAGTTCATTTATA
         66 TTAAAAGCCTAACTT-AGAAAAAGTGTAGAAAAAGCCATTCATTGAGAAGAAAAAATCATTTATA

                                 *                     
        777 GTCACCCATTCCTT-GAAAAGGCATATTACTCACTTTAAATAG
        130 GTCACCCATTCCTTCG-AAAGCCATATTACTCACTTTAAATAG

                              *          *     
        819 TTTTATAATCTCATAATTAATTTTAAGTTAAATTT
          1 TTTTATAATCTCATAATTGATTTTAAGTTGAATTT

        854 NNNNNNNNNN


Statistics
Matches: 165,  Mismatches: 37, Indels: 6
        0.79            0.18        0.03

Matches are distributed among these distances:
 168    1  0.01
 169  118  0.72
 170   10  0.06
 171   36  0.22

ACGTcount: A:0.36, C:0.13, G:0.11, T:0.38


Consensus pattern (171 bp):   
TTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTCACATTTTTCTTTAAAACAGACAATAA
TTAAAAGCCTAACTTAGAAAAAGTGTAGAAAAAGCCATTCATTGAGAAGAAAAAATCATTTATAG
TCACCCATTCCTTCGAAAGCCATATTACTCACTTTAAATAG
Done.