Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399666.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2913.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 964

Length: 1608
ACGTcount: A:0.33, C:0.12, G:0.14, T:0.35

Warning! 100 characters in sequence are not A, C, G, or T


Found at i:293 original size:172 final size:171

Alignment explanation


    Indices: 4--1214  Score: 1374
    Period size: 172  Copynumber: 7.1  Consensus size: 171

          1 AGC

                                                        *     **          *  
          4 GAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTCTCTTGTTAATGAATACTCTT
          1 GAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATACTTTT

                                   *        *                       *        
         69 TTCTTCATGTTTCTCAAGGTAGATATTCAATTTTAGTCTGTTTTAACCAAAAATGTGCAAAGAAT
         66 TTCTTCATGTTTCTCAAGGTAGACATTCAATTCTAGTCTGTTTTAACCAAAAATGTACAAA-AAT

                                *                     
        134 TCAAATTTAAATCAATTTTGGGATTATAAAACCATTTAAAGT
        130 TCAAATTTAAATCAATTTTGAGATTATAAAACCATTTAAAGT

              *                  *  *    *                  *  *             
        176 GATTAATAAGGCTTTTGAAGGTATTGGTGGCTATAAATGGACTTTTCTGGCTAATGAATACTTTT
          1 GAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATACTTTT

                          *  *             *             *          *        
        241 TTCTTCATGTTTCTAAAAGTAGACATTCAATCCTAGTCTGTTTTAGCCAAAAATGTGCAAAGAAT
         66 TTCTTCATGTTTCTCAAGGTAGACATTCAATTCTAGTCTGTTTTAACCAAAAATGTACAAA-AAT

                  *      *                            
        306 TCAAATCTAAATCTATTTTGAGATTATAAAACCATTTAAAGT
        130 TCAAATTTAAATCAATTTTGAGATTATAAAACCATTTAAAGT

             *                   *  **            *       *                  
        348 GCGTAATAAGGCTTTTGAAGGTATTAGTGACTATAAATAGACTTTTTTTGCCAATGAATACTTTT
          1 GAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATACTTTT

                            *    * *               *             *   *       
        413 TTCTTCATGTTTCTCATGGTATAGATTCAATTCTAGTCTATTTTAACCAAAAACGTATAAAACAT
         66 TTCTTCATGTTTCTCAAGGTAGACATTCAATTCTAGTCTGTTTTAACCAAAAATGTACAAAA-AT

                                            *       * 
        478 TCAAATTTAAATCAATTTTGAGATTATAAAACTATTTAAATT
        130 TCAAATTTAAATCAATTTTGAGATTATAAAACCATTTAAAGT

            *            *                 *                                 
        520 AAGTAATAAGGCTCTTGAAGGAATGGGTGACCATAAATGGACTTTTCTTGCCAATGAATACTTTT
          1 GAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATACTTTT

            * *             *    * *               *       *                 
        585 CTATTCATGTTTCTCATGGTATAGATTCAATTCTAGTCTATTTTAACTAAAAATGTACAAAACAT
         66 TTCTTCATGTTTCTCAAGGTAGACATTCAATTCTAGTCTGTTTTAACCAAAAATGTACAAAA-AT

                                                      
        650 TCAAATTTAAATCAATTTTGAGATTATAAAACCATTTAAAGT
        130 TCAAATTTAAATCAATTTTGAGATTATAAAACCATTTAAAGT

             *           *      *                  *    *               * *  
        692 GCGTAATAAGGCTCTTGAAGAAATGGGTGACTATAAATGAACTTCTCTT-CTCAATGAATGCCTT
          1 GAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTGC-CAATGAATACTTT

                    **       *     *         **   *         *      *  *      
        756 TTTCTTCACATTTCTCATGGTAGGCATTCAATTAGAGTTTG-TTTAACTAAAAATATAAAAAAAT
         65 TTTCTTCATGTTTCTCAAGGTAGACATTCAATTCTAGTCTGTTTTAACCAAAAATGTACAAAAAT

              ***  *         *         *              *
        820 TCGGCTTAAAATCAATTATG-GCATTACAAAACCATTTAAAGC
        130 TCAAATTTAAATCAATTTTGAG-ATTATAAAACCATTTAAAGT

                                 *      *  *    * *          *  *      *     
        862 GAGTAATAAGGCTTTTGAAGGTATGGGTAACCATAACTAGACTTTTCTTTCCGATGAATGCTTTT
          1 GAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATACTTTT

                                                           *         *       
        927 TTCTTCATGTTTCTCAAGGTAGACATTCAATTCTAGTCTGTTTTAACAAAAAATGTATAAAAATT
         66 TTCTTCATGTTTCTCAAGGTAGACATTCAATTCTAGTCTGTTTTAACCAAAAATGTACAAAAATT

            *    *   *        *                      
        992 TAAATCTAATTCAATTTTTAGATTATAAAACCATTTAAAGT
        131 CAAATTTAAATCAATTTTGAGATTATAAAACCATTTAAAGT

                       *                *               *        *           
       1033 GAGTAATAAGGTTTTTGAAGGAATGGGTTACTATAAATGGACTTCTCTTGCCAGTGAA-ACTTCT
          1 GAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATACTT-T

            *  *                   *          *  * *         *        *      
       1097 CTTATTCATGTTTCT-AAGGGTAAACATTCAATTATAATATGTTTTAACTAGAAAA-GCA-AAAA
         65 TTTCTTCATGTTTCTCAA-GGTAGACATTCAATTCTAGTCTGTTTTAACCA-AAAATGTACAAAA

                 *  * **                                  
       1159 ATTTTGAACTGAAAATCAATTTTGAGATTATAAAACCATTTAAAGT
        128 A--TTCAAATTTAAATCAATTTTGAGATTATAAAACCATTTAAAGT

              *       
       1205 GATTAATAAG
          1 GAGTAATAAG

       1215 NNNNNNNNNN


Statistics
Matches: 885,  Mismatches: 143, Indels: 22
        0.84            0.14        0.02

Matches are distributed among these distances:
 169    1  0.00
 170  129  0.15
 171  162  0.18
 172  593  0.67

ACGTcount: A:0.36, C:0.13, G:0.14, T:0.37


Consensus pattern (171 bp):   
GAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATACTTTT
TTCTTCATGTTTCTCAAGGTAGACATTCAATTCTAGTCTGTTTTAACCAAAAATGTACAAAAATT
CAAATTTAAATCAATTTTGAGATTATAAAACCATTTAAAGT

Done.