Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399671.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2918.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5732
ACGTcount: A:0.15, C:0.05, G:0.06, T:0.15

Warning! 3452 characters in sequence are not A, C, G, or T


Found at i:4012 original size:19 final size:19

Alignment explanation


    Indices: 3988--4026  Score: 69
    Period size: 19  Copynumber: 2.1  Consensus size: 19

       3978 TATTGTCTGT

                        *      
       3988 TTTTCAAGGAATGAGAGGC
          1 TTTTCAAGGAATAAGAGGC

                               
       4007 TTTTCAAGGAATAAGAGGC
          1 TTTTCAAGGAATAAGAGGC

             
       4026 T
          1 T

       4027 ATAAATAGAC


Statistics
Matches: 19,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  19   19  1.00

ACGTcount: A:0.33, C:0.10, G:0.28, T:0.28


Consensus pattern (19 bp):   
TTTTCAAGGAATAAGAGGC
Done.